XLOC_037369 (BX571827.3)


Basic Information

Item Value
gene id XLOC_037369
gene name BX571827.3
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41509948 ~ 41598827 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073534
GGTCGAAGGCCAAACGTTGTTTTTTGGCGCTAATTCACCTCACCTGAAGTAAACAAACCTTTGGAAGCGAATGTGAAACTGAAACAAGGATTCATTCAAGGAATTCAACAAAGCTCcacaaagCCGAAAATTAAAATGTGATGATCACAACAAGTGGGCAGCTTCAATCCTCAGTGACATCACCGAGGAAACACCCTAATTATCAGGGTAAGGTTTCCGCCTGCAGGGGGCGatgttttacacacacattcaccagACGCTCTTCTCATCACAGCACCACAGCGCTCTGCCTCCAGCTTTAAGTGAGACTCGACCACACCGGCTTTTTCAGCAGTCCAAACTGGATTCAGATCATGCCACCGATACCATCAGGTCACCAGCGGGTCTGACCGTCAATTCCCAGCTTCCAGAAACCATCACTCCCACCTCGGTTAAACGCAACAAAAGACCAGGATTACTCCAAGCCATGAAGAAAATCTGGTCCAAGAAACGCTTTCAGGTGAGTCCTTGCATGCCTCGTTTTTCATGCCTTGCATGTTGA
>TCONS_00073535
GGTCGAAGGCCAAACGTTGTTTTTTGGCGCTAATTCACCTCACCTGAAGTAAACAAACCTTTGGAAGCGAATGTGAAACTGAAACAAGGATTCATTCAAGGAATTCAACAAAGCTCcacaaagCCGAAAATTAAAATGTGATGATCACAACAAGTGGGCAGCTTCAATCCTCAGTGACATCACCGAGGAAACACCCTAATTATCAGGGTAAGGTTTCCGCCTGCAGGGGGCGatgttttacacacacattcaccagACGCTCTTCTCATCACAGCACCACAGCGCTCTGCCTCCAGCTTTAAGTGAGACTCGACCACACACTCTGAGACTACAGAAGACGAAGCCGCTGAGCCACAAATACCCCTGGAGGCCAAAGAAGGAGCCAGAGGTTTTCAGGATGAGGCCCAACGAGTGCCTGCAGGTACTGTACATGACATTTCAAATAGAGCTACTGAAAGTTAACCTTTTGTAGTTTATAAGAGTAACATTTTGCAGTATAATGCATGTCCACATTCAGACCAGCTAAAAACCATTTGGACGTTTTAATAATTACGAacgttaataattaatgtatctTTAGCAGCAAGTCAGCTTAAAAAGTATGCCGATATTGAATGTGATTCAAATGGGTTAAATCAAGACATCTTTTAAAGTGTAAAGGTTTTTGACAATATTACTGGTTTCATTTTTTCAGCAATGCAAATGCTGTCAGAAATTTTATTGGCCACACACACAAGATGTTTTTTGTGGTTTAAAAAGACTTTCCATTGGCGTACTGTGTTTTTTACCGCTTATTATATAGCCTTACCCCCAGGGACGTTGCTAGGGTTGAAAGAGATAAGGGGCTTAGCTCTAAAGAAGTTaaagggatgcaccgataccatttttttggATCCGATCTtgataccaaaattctgagtatcgaccaATACAGATccgatacagtttttttttttttttttttaagcattatacagtttctatagttctggtgataaactcaaaaaatatatgctatttagaataaataacagacctatagacctactgtatatgacagacaGCACAATCTAACTTAAAACATGATGCTCgctgtaaactaggctacattattcgAGCATTCATTAcgacattgatctgttgtggcacagcttatgtttccttttttaatattaagatttatcTTTGAAATTGCACAATTGCATTTTAGTaataggctaccactattgaccctaattag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117405

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073534 False 541 lncRNA 0.48 3 41509948 41579002
TCONS_00073535 True 1240 lncRNA 0.38 3 41509948 41598827

Neighbor

gene id symbol gene type direction distance location
XLOC_037368 nemp2 coding upstream 28298 41459759 ~ 41481650 (+)
XLOC_037367 BX649377.1 coding upstream 243105 41249457 ~ 41266843 (+)
XLOC_037366 stat1b coding upstream 262751 41218967 ~ 41247197 (+)
XLOC_037365 stat4 coding upstream 301605 41156287 ~ 41208343 (+)
XLOC_037364 slc40a1 coding upstream 396070 41103127 ~ 41113878 (+)
XLOC_037371 spegb coding downstream 13815 41612642 ~ 41681053 (+)
XLOC_037372 dre-mir-732 coding downstream 84099 41682926 ~ 41683010 (+)
XLOC_037373 ctdsp1 coding downstream 91326 41690153 ~ 41741420 (+)
XLOC_037374 dre-mir-26a-1 coding downstream 134706 41733533 ~ 41733610 (+)
XLOC_037375 BX927363.1 coding downstream 189390 41788217 ~ 41806355 (+)
XLOC_037359 BX323586.1 non-coding upstream 612765 40895649 ~ 40897183 (+)
XLOC_037355 BX936447.2 non-coding upstream 1231685 40278147 ~ 40278263 (+)
XLOC_037354 BX255912.2 non-coding upstream 1372336 40137497 ~ 40137612 (+)
XLOC_037353 NA non-coding upstream 1644276 39863253 ~ 39865672 (+)
XLOC_037377 BX247868.1 non-coding downstream 391259 41990086 ~ 42038319 (+)
XLOC_037379 NA non-coding downstream 503374 42102201 ~ 42108086 (+)

Expression


Co-expression Network