LOC110502262 (LOC106604523)


Basic Information

Item Value
gene id LOC110502262
gene name LOC106604523
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10310776 ~ 10328183 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580163.2
AGTGTCGTAAAACATTTAATTTACTTCCCCATACAGCAGCTAGCGTATACAAGGTGCAAAAGCGATGGTGCTCTAAAAACACAATTCTTCTTACCAAACTTCAAATTCATGAAGATTTTCATTAGACAACTTGAAAGGCTAAAGCATGGAGGACATGGAAGAAGAAAGTTCTGGTCTAAATGACGACCACAACCATAACTACTGTGAAAACCGTGCCAGTGGACAAGTTCACTTTCTCAGGACCGAATTGTCAAATGAACCCCAGACCCTACCAATTTTTCCGGTTCTGGGCACGCGAGATGTAGCTGCGCAGGAGAACCACACAAAGATTTGTTCCAGTTCCAGCAGTGGTTCAAAGTTCGTGGATTCAGACTCTAACAGCGTGAACAGTGAGACCAGCGAGACTGACAGTGCATCGCCGGCTTCCATCGCAGGGAAACTGACCCTGAACTCCGCCTCAAAGTTTCTAATGAATGCAATGACCGAAGAGGACTATAGAACCACATACTGGCCGAACCTGGAGAAAGCCATTGACCACCTGCTGATACAAAACCCCATGGACCACATCTCCATTTCATATGAGCAGATATACAGTTATGTGTACAAGTGTGTTTGTCAACAGCACTCAGAGCTACTGTACAAAGACTTGATGCTGAAGATTACTACCCATCTTCAACAAGTCTCATCTGATTTACAAATTGTTCCACCAGGGAATTTCATTGAGCATTTTAACattgctctgactcagtacacAGATGCTCTTCAATGCATAGTTCCTGTATTCATCTACATGAATAAATTCTACATTGAAACGAAGCTAAACCGGCACCTGCGAGAAGATCTCATGAAGCTTTTTACTGATCATGTTGCAGAAAAACATGTGAACACGCTGATACCTCTTCTCCTCGAAGCCCATTCCATGCCTTTTCAAGTCAGACCTTCAACAATGGCCAGTGTCGTGAAAGGCCTGTATACTCTTCGGCCAGATTGGGCACATTTAGCCCCAGCTCTCTTCTCTGGATTCATTCCTCAAATCAACCCGCCGACAGTGGAATCCCAGCTCTCTGACTATGCTGCTCATGACCAGAAACTACAAATGGAGCTCTCTCAGAATGGCTTTCCCAGAGGTGACCAGTCTCGCAAGAGAGCCAGCGAGGAGTCTGCATAGAGTGCTCAGACAGTCTTCGACCTGGCTCAACCCAAATTCACAAAACACTGAACGATTAAGATTCTCTGATGCTGAGTGCAGTGGGTGAGCATAAGCATGGGCTCGTTTTTGACCCGCAAGAGTCATAGTGGACACTGCTTTCTTTGCCTCTTTTTTGAAAAGCACAGTGAATTCATAATGGTGCATAATGATTCTGTCAGCTTTTGGTGATGAATCCATCTTCTTTATTGTTAAGGTATTATGTAGTTTAATGTATTTGTTCTTATTTTCTCCATTAAAGTGTGCCTTCTGCTCTGCTTTGTTGGGATATTCAAGTTGCCATTAACCAGGTGGATGGGGCATGATTCCCAGTTTGACCACATACTGTGTCAATtatgggtcatgttcattaggatATGCCGCGGAAAACATGAATTACAGTGGAAAACAATTGGAGTGTTTCTGATTGGACAAATACAGGTGGTTCCTCTGTTTGTCCGTTTTCTTCCACtttgtgcctaatgaacataACTCTAACCTGGACCTCCCTGATCTGTTATTGGTCTGATTGATCTGATTCTGTAACTATGACAGTCTGCTGCTATTCCTCATCTGTTGTTGTATAGAACACTTGATttttgtctgtctggtctgtgtaaTTAATATTGACAGTTGTATGGATAGGAACAAATTGTGTCACTTTGTATCAGTCAGATATGTTAACGTCTGTAATGAAAGACTAGGGTCTGGGAAGTGGGAACATTTCCTCTTGAATTTAAGAAAGTTCTACAGTGGCACATACCCAATTAGGTATGCATTTCATTCTATTTTTGATGTTTAGGCTTTAAGCAATGGTTTATCTGGAACTTACAGGATAAAATATGTCCTGTATAACAATTTCTTTCTCAATGGGTATGAAACGGCAACAAAGCTTGTTAGCATACAAAATAGGAGTATTTTTAATtgaatttaactaggcaagtcaattaacacattcttatttacaatgacggcctaaagtTTTGGTTATAACTGAATAGGTTATGTCGGTAATTGTTTAAAGGTCTATTTTCTACAACATTTATATTTAATTGCCTTTGTTTTTGAACCAGATCGTATTTACCAAGCATGCCAAAGATGATTCACAATGTTCTTATTCCCTgttctaaaaaaaaataaaaaaataattgcaTTGTGACTCCAGAAATGATGGTGTCAGTCTCCCCATGTTGCTGCTGTATCTGCATTAGCTTACCCATTGTACCAAGTCACTGAGCCAATTGATTAGGATACATTTTTGAAACTGTTGTGAATTTGTTTACAATAATTATGTCAAATGATGTAGGTGGAGTTAATTAAAATCATCCCTGTGTTCTCTCCAGTTCCTGATGATGTAAACCGATCCAGTCTCATTGTGGTAATGATCAATGTACGGTAGTTACTGTCACAGATTTACCTTTGTTACATGTGGTTTATGTTAAAATGGAAGTATTTGATACAGCTCTTTGCACTGTTTTAAGTGTAATGTGATGCTCATCTTTGAAGATGTTGGAGATGGCACGCTCATTGTCTTATGTACAGTTTTACTTTCAATAAACAAATCTTGAAAAG

Function

NR:

description
CDK2-associated and cullin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580163.2 True 2758 mRNA 0.40 9 10310776 10328183

Neighbor

gene id symbol gene type direction distance location
LOC110502263 LOC106604517 coding downstream 1938 10262066 ~ 10308838 (-)
LOC110502265 LOC106604528 coding downstream 94287 10209501 ~ 10216489 (-)
LOC110502266 LOC106604534 coding downstream 104577 10160479 ~ 10206199 (-)
LOC110502268 LOC106604541 coding downstream 156487 10140097 ~ 10154289 (-)
LOC110531428 glrx3 coding downstream 396068 9882043 ~ 9914708 (-)
LOC110503047 NA coding upstream 10356 10338539 ~ 10343205 (-)
LOC110502261 LOC106604510 coding upstream 28509 10356692 ~ 10364503 (-)
LOC110502259 LOC106604487 coding upstream 68157 10396340 ~ 10425115 (-)
LOC110502258 lrrfip2 coding upstream 129130 10457313 ~ 10470536 (-)
cutc cutc coding upstream 157900 10486083 ~ 10492607 (-)
G1828263 NA non-coding downstream 131952 10178585 ~ 10178824 (-)
G1828262 NA non-coding downstream 132368 10178193 ~ 10178408 (-)
G1828083 NA non-coding downstream 172248 10137818 ~ 10138528 (-)
G1828066 NA non-coding downstream 184296 10112241 ~ 10126480 (-)
G1828357 NA non-coding upstream 45562 10373745 ~ 10374676 (-)
G1828365 NA non-coding upstream 59413 10387596 ~ 10387927 (-)
G1828561 NA non-coding upstream 114886 10443069 ~ 10443358 (-)
G1828562 NA non-coding upstream 115421 10443604 ~ 10444469 (-)
G1828563 NA non-coding upstream 116590 10444773 ~ 10444993 (-)
G1827761 NA other downstream 621932 9688457 ~ 9688844 (-)
G1827690 NA other downstream 765803 9544383 ~ 9544973 (-)
G1827656 NA other downstream 844286 9466070 ~ 9466490 (-)
LOC110512783 tcerg1l other downstream 885295 9406037 ~ 9611812 (-)
G1827339 NA other downstream 1151161 9159197 ~ 9159615 (-)
G1829417 LOC106604325 other upstream 874884 11203067 ~ 11203996 (-)
G1829918 NA other upstream 1405247 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 1472500 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 1589896 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 2064780 12392924 ~ 12411810 (-)

Expression


Co-expression Network