LOC110502261 (LOC106604510)


Basic Information

Item Value
gene id LOC110502261
gene name LOC106604510
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10356692 ~ 10364503 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580162.2
GGAGAGCGAGTCACATGCGCCATTTAAATACCCAGCTGTCGACCGAGAAATTTTTTTTCACCACAGCGGCTTTTTCTGCTGAAGATGGCGGACGGGGAGAATATCCTTGTTGGAGCCACTTCCAGCGCTTCAAGTATGGAAGAACCCGTTTCAAAAAAGTCCAAAATGAGCATGGCCATAGAATGTGGGCTCAAAATTGTTCAGACTGAGCAAGCTACATACGGGCTAGAGGCTTGTGAGAGTTGGGCTGCGGCGATTTCTGCGCGGCCAGATGAGGAGATTGAGCCGGTGATGGCGTTAGGACAGGCCCCAGCAGCAGCACTAGGCGGAGACAATGGGCTGCTGGTCTTGGAGCCTCAGGAAAGCGTAACAAACTTAAACGCGTCTGGACCCGCTGCGGAGCTTGCAGATGGTGTCAATGAGGATGATGACAGATCCTCACATGCAAGTTCCAGTGACTGGACCCCTCAACCACAGATAGgtTCCTACAGTTTTATTCAGCAACACATTATGAGAGAGACCAATCCGAGAACAATACTAAAAGACTTGCTTCCTGAGACTGTGCTTCCGCCCGACTTGGATGACATGACACTGTGGCAGATCATCATCAACATCTCGGAGCCTCCTAAAAGAAAGAAGCGCAAAGACATAAACACCCTGGAGGATGTGGTTCGGCTACTCCAGGAAAGCAAAAAGATCCTTGTGCTGACCGGTGCTGGGGTCTCTGTTTCTTGTGGAATACCAGACTTTCGATCCAGAGATGGCATTTATGCAAGGCTGGCAATAGATTTCCCAGATCTTCCAGACCCTCAGGCAATGTTTGATATCGAGTACTTCAGAAGAGACCCAAGGCCATTTTTCAAGTTTGCTAAGGAGATCTATCCAGGACAGTTCCAACCTTCGCCTTGTCACAAATTCATATCTATGCTGGACAAGCAGGGGAAGCTACTCCGCAACTACACCCAGAATATAGACACTCTTGAACAAGTGGCTGGGGTTAAGAGGATCATCCAATGTCACGGGTCTTTTGCAACAGCTTCCTGTCTCGTCTGTAAACACAAGGTTGACTGTGAGGCCGTAAGGGAAGACATTTTTTATCAGGTTGTTCCTCACTGTCCACGGTGTACAGATATCCCCCTGGCAATCATGAAGCCAGATATTGTCTTCTTTGGAGAGAATCTTCCAGAAATATTCCACAGAGCAATGAGGCAGGATAAGGATGAAGTGGACCTCCTTATTGTCATTGGGTCCTCACTGAAAGTGCGACCGGTGGCTCTCATCCCaaCCTCTATTCCTCATGACGTGCCTCAAGTCTTGATAAATCGGGAGCAGCTGCCTCACCTCAACTTTGATGTGGAGCTACTTGGGGACTGTGATGTCATCGTTAACGAGCTCTGCCATCGGTTGGGCGGAGACTTTGAGCAACTGTGCTACAACTCCTTAAGACTCAATGAGATCACAGAAAACCCCCCGCGGTTAGTGACTTCTGCAGAGCAGCCATCTTGCAAGGCCTTGTCTACTCACAGTAAGCCATCAGAAAAAGAACAGAAGCACCGTCACACAGATTCATCAGTCAGTGCTTCAGAGGAGACAAACACTCATATGGTCTCAGACACTCCAGAACGCGACAGAGTACCAACAGAACCTTGTCCGACGGCTCAGAATGTCACTGACACACCTGAAGTCGATGGCGTACCACCGGAGCCCTGTCCAAAAGGGCAGATTGTCCAAGACACTCCAGAAGTAGTAGCACAACCAGAGCCCTGTCCAAAGGCTCCAAGCCCCAATGAGGAGAGAATGGAGTATTCCGTCTCTCCATCAGCAGACACGCGGAGTGAAGAAGGCTCTGGATTAAATGATCAACACATCAACCTTGAGGTTCGCAGACTATGCTGGATGAGTCGAATCTGTCGAAGTCCTATCAGCAAGCGCCTTGAGACTTCTCAATACCTTTTCCGAGCACCAAATCACTACATCTTTCATGGGGCAGAAGTGTACTCCAACTCGGAGGATGAGACGTCCAGCTCCTGCGAGAGCGATGACTCAAGCTTGGAGATGGAGGAAGACAGCGAAGCAGAGAACGAGCAGAGCGCACCAACAGAGGAGGTCGAGGGCTGCCTCATAGACACAGTGACACACAAGAAAGCCTGCGAGGGCACCTTGAGTGTGAAGCAGACAGACAATACAGACACAAATGTTCAGAACACCACAGACCTGTAAAAAAGACAGAATTACCCTGTCTTGACAAGGCacttttcttttttgattttattatcttgtttagtatttttttttactagatTGCGTTGACACTTGCGTGCTTGTGCAGAAAATTAATTCTGTCTTTCTGCGTCCGACCACATTACTGAGCTGCAGGGTAGTTGAGTACATGTTTTGTGTACTACCATTAGCAGCTTAACCAAGAAAGGAACAGCAAACTTAGACCAAAGAACACCCCCCCATACTCCAAATGTTTTTCAATTTTTCCATAGTCCTAAAAGGTTTGTTTTTGACTTACCCACCACTGAAGTGTAAAGATTATATTTAATGGTGGCATTGTTTTCCTTACGATATTTGGCAGCTACTTTTTACTGTCACGGTCAAGcttttattatttttgtattttgtaagaCATACTCAACGAGTAGGTGATGGTTTTCTAAATCATATTGAAGTTATACATTGTGCAAACATAAAGCCTTATAACCATGTTCAATATGCTTTCTTTTGAGCAAATAGCACTTTTTTTGTCTTCCATTTCGAGCTGTTTGATGCAACCAAGGACATAAGTACAAATGCATGAGCTATTTGGAGGATGTGACTGGTTGTGGAAGTGCAAATCTATAGAGCTCGTATTCACTTGTCTGGAGAAATATCCAGCCGTAACACAGACATTGTGTTCTGTGAGCAGTTTAACATGAGCTGAATTTAGTGTTTTAAGAACCTTATTTGTATGtttaaattgtttttgttttgatattGATCTTGGTAGTAAAATCGCAAGCATTTTCAACATTTGTGGTAggcattttttttgttttcatgacACAACATAAATAGCCTTTATTAATCACAAGGTGTAACACACTTGTGTAAGAAATGGATAGAGATATGAGAGTTGCATGCTATTTGATGGCCAACTTTAGTTTGAGAAGACCACTACAGGTAAGTGCATGCAGTTCAGATCCTGCAGCAGTGCCAAGATGTTTTACACAAGTGAAGGGACAACATTTACATGAATGAAATGGAGATGATTAAAATGAAATTTGAGTTTAGAAATAGTATGTCATTCCTTGTGATGTTGGTGTGTCAGCTTTTATGCTCTgcattatttttttacattaaaaacGTACTAACCGTT
>XM_021580161.2
AGTGGAGAGCGAGTCACATGCGCCATTTAAATACCCAGCTGTCGACCGAGAAATTTTTTTTCACCACAGCGGCTTTTTCTGCTGAAGATGGCGGACGGGGAGAATATCCTTGTTGGAGCCACTTCCAGCGCTTCAAGTATGGAAGAACCCGTTTCAAAAAAGTCCAAAATGAGCATGGCCATAGAATGTGGGCTCAAAATTGTTCAGACTGAGCAAGCTACATACGGGCTAGAGGCTTGTGAGAGTTGGGCTGCGGCGATTTCTGCGCGGCCAGATGAGGAGATTGAGCCGGTGATGGCGTTAGGACAGGCCCCAGCAGCAGCACTAGGCGGAGACAATGGGCTGCTGGTCTTGGAGCCTCAGGAAAGCGTAACAAACTTAAACGCGTCTGGACCCGCTGCGGAGCTTGCAGAGTGTCGTGGCACTGATGAGGAGTTTCACCAAAATGGCTTTGCCTTCCCAGATGGTGTCAATGAGGATGATGACAGATCCTCACATGCAAGTTCCAGTGACTGGACCCCTCAACCACAGATAGgtTCCTACAGTTTTATTCAGCAACACATTATGAGAGAGACCAATCCGAGAACAATACTAAAAGACTTGCTTCCTGAGACTGTGCTTCCGCCCGACTTGGATGACATGACACTGTGGCAGATCATCATCAACATCTCGGAGCCTCCTAAAAGAAAGAAGCGCAAAGACATAAACACCCTGGAGGATGTGGTTCGGCTACTCCAGGAAAGCAAAAAGATCCTTGTGCTGACCGGTGCTGGGGTCTCTGTTTCTTGTGGAATACCAGACTTTCGATCCAGAGATGGCATTTATGCAAGGCTGGCAATAGATTTCCCAGATCTTCCAGACCCTCAGGCAATGTTTGATATCGAGTACTTCAGAAGAGACCCAAGGCCATTTTTCAAGTTTGCTAAGGAGATCTATCCAGGACAGTTCCAACCTTCGCCTTGTCACAAATTCATATCTATGCTGGACAAGCAGGGGAAGCTACTCCGCAACTACACCCAGAATATAGACACTCTTGAACAAGTGGCTGGGGTTAAGAGGATCATCCAATGTCACGGGTCTTTTGCAACAGCTTCCTGTCTCGTCTGTAAACACAAGGTTGACTGTGAGGCCGTAAGGGAAGACATTTTTTATCAGGTTGTTCCTCACTGTCCACGGTGTACAGATATCCCCCTGGCAATCATGAAGCCAGATATTGTCTTCTTTGGAGAGAATCTTCCAGAAATATTCCACAGAGCAATGAGGCAGGATAAGGATGAAGTGGACCTCCTTATTGTCATTGGGTCCTCACTGAAAGTGCGACCGGTGGCTCTCATCCCaaCCTCTATTCCTCATGACGTGCCTCAAGTCTTGATAAATCGGGAGCAGCTGCCTCACCTCAACTTTGATGTGGAGCTACTTGGGGACTGTGATGTCATCGTTAACGAGCTCTGCCATCGGTTGGGCGGAGACTTTGAGCAACTGTGCTACAACTCCTTAAGACTCAATGAGATCACAGAAAACCCCCCGCGGTTAGTGACTTCTGCAGAGCAGCCATCTTGCAAGGCCTTGTCTACTCACAGTAAGCCATCAGAAAAAGAACAGAAGCACCGTCACACAGATTCATCAGTCAGTGCTTCAGAGGAGACAAACACTCATATGGTCTCAGACACTCCAGAACGCGACAGAGTACCAACAGAACCTTGTCCGACGGCTCAGAATGTCACTGACACACCTGAAGTCGATGGCGTACCACCGGAGCCCTGTCCAAAAGGGCAGATTGTCCAAGACACTCCAGAAGTAGTAGCACAACCAGAGCCCTGTCCAAAGGCTCCAAGCCCCAATGAGGAGAGAATGGAGTATTCCGTCTCTCCATCAGCAGACACGCGGAGTGAAGAAGGCTCTGGATTAAATGATCAACACATCAACCTTGAGGTTCGCAGACTATGCTGGATGAGTCGAATCTGTCGAAGTCCTATCAGCAAGCGCCTTGAGACTTCTCAATACCTTTTCCGAGCACCAAATCACTACATCTTTCATGGGGCAGAAGTGTACTCCAACTCGGAGGATGAGACGTCCAGCTCCTGCGAGAGCGATGACTCAAGCTTGGAGATGGAGGAAGACAGCGAAGCAGAGAACGAGCAGAGCGCACCAACAGAGGAGGTCGAGGGCTGCCTCATAGACACAGTGACACACAAGAAAGCCTGCGAGGGCACCTTGAGTGTGAAGCAGACAGACAATACAGACACAAATGTTCAGAACACCACAGACCTGTAAAAAAGACAGAATTACCCTGTCTTGACAAGGCacttttcttttttgattttattatcttgtttagtatttttttttactagatTGCGTTGACACTTGCGTGCTTGTGCAGAAAATTAATTCTGTCTTTCTGCGTCCGACCACATTACTGAGCTGCAGGGTAGTTGAGTACATGTTTTGTGTACTACCATTAGCAGCTTAACCAAGAAAGGAACAGCAAACTTAGACCAAAGAACACCCCCCCATACTCCAAATGTTTTTCAATTTTTCCATAGTCCTAAAAGGTTTGTTTTTGACTTACCCACCACTGAAGTGTAAAGATTATATTTAATGGTGGCATTGTTTTCCTTACGATATTTGGCAGCTACTTTTTACTGTCACGGTCAAGcttttattatttttgtattttgtaagaCATACTCAACGAGTAGGTGATGGTTTTCTAAATCATATTGAAGTTATACATTGTGCAAACATAAAGCCTTATAACCATGTTCAATATGCTTTCTTTTGAGCAAATAGCACTTTTTTTGTCTTCCATTTCGAGCTGTTTGATGCAACCAAGGACATAAGTACAAATGCATGAGCTATTTGGAGGATGTGACTGGTTGTGGAAGTGCAAATCTATAGAGCTCGTATTCACTTGTCTGGAGAAATATCCAGCCGTAACACAGACATTGTGTTCTGTGAGCAGTTTAACATGAGCTGAATTTAGTGTTTTAAGAACCTTATTTGTATGtttaaattgtttttgttttgatattGATCTTGGTAGTAAAATCGCAAGCATTTTCAACATTTGTGGTAggcattttttttgttttcatgacACAACATAAATAGCCTTTATTAATCACAAGGTGTAACACACTTGTGTAAGAAATGGATAGAGATATGAGAGTTGCATGCTATTTGATGGCCAACTTTAGTTTGAGAAGACCACTACAGGTAAGTGCATGCAGTTCAGATCCTGCAGCAGTGCCAAGATGTTTTACACAAGTGAAGGGACAACATTTACATGAATGAAATGGAGATGATTAAAATGAAATTTGAGTTTAGAAATAGTATGTCATTCCTTGTGATGTTGGTGTGTCAGCTTTTATGCTCTgcattatttttttacattaaaaacGTACTAACCGTT

Function

NR:

description
NAD-dependent protein deacetylase sirtuin-1-like isoform X1

GO: NA

KEGG:

id description
K11411 SIRT1, SIR2L1; NAD+-dependent protein deacetylase sirtuin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580162.2 False 3361 mRNA 0.45 9 10356692 10364500
XM_021580161.2 True 3415 mRNA 0.45 9 10356692 10364503

Neighbor

gene id symbol gene type direction distance location
LOC110503047 NA coding downstream 13487 10338539 ~ 10343205 (-)
LOC110502262 LOC106604523 coding downstream 28509 10310776 ~ 10328183 (-)
LOC110502263 LOC106604517 coding downstream 47854 10262066 ~ 10308838 (-)
LOC110502265 LOC106604528 coding downstream 140203 10209501 ~ 10216489 (-)
LOC110502266 LOC106604534 coding downstream 150493 10160479 ~ 10206199 (-)
LOC110502259 LOC106604487 coding upstream 31837 10396340 ~ 10425115 (-)
LOC110502258 lrrfip2 coding upstream 92810 10457313 ~ 10470536 (-)
cutc cutc coding upstream 121580 10486083 ~ 10492607 (-)
LOC110502255 kcnip2 coding upstream 142284 10506787 ~ 10603546 (-)
LOC118943886 NA coding upstream 252342 10616845 ~ 10734529 (-)
G1828263 NA non-coding downstream 177868 10178585 ~ 10178824 (-)
G1828262 NA non-coding downstream 178284 10178193 ~ 10178408 (-)
G1828083 NA non-coding downstream 218164 10137818 ~ 10138528 (-)
G1828066 NA non-coding downstream 230212 10112241 ~ 10126480 (-)
G1828357 NA non-coding upstream 9242 10373745 ~ 10374676 (-)
G1828365 NA non-coding upstream 23093 10387596 ~ 10387927 (-)
G1828561 NA non-coding upstream 78566 10443069 ~ 10443358 (-)
G1828562 NA non-coding upstream 79101 10443604 ~ 10444469 (-)
G1828563 NA non-coding upstream 80270 10444773 ~ 10444993 (-)
G1827761 NA other downstream 667848 9688457 ~ 9688844 (-)
G1827690 NA other downstream 811719 9544383 ~ 9544973 (-)
G1827656 NA other downstream 890202 9466070 ~ 9466490 (-)
LOC110512783 tcerg1l other downstream 931211 9406037 ~ 9611812 (-)
G1827339 NA other downstream 1197077 9159197 ~ 9159615 (-)
G1829417 LOC106604325 other upstream 838564 11203067 ~ 11203996 (-)
G1829918 NA other upstream 1368927 11733430 ~ 11733926 (-)
LOC118943913 drgx other upstream 1436180 11798161 ~ 11807866 (-)
LOC110502234 LOC106604225 other upstream 1553576 11907827 ~ 11953940 (-)
LOC110502269 LOC106604550 other upstream 2028460 12392924 ~ 12411810 (-)

Expression


Co-expression Network