LOC110502253 (LOC106604458)


Basic Information

Item Value
gene id LOC110502253
gene name LOC106604458
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 10491410 ~ 10506579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580145.2
CAGAGGTCAGAGTTGAATTGCATGTCTCTGTTAGGAAACACTTACGGTTgtgtaacgtttttttttttttatcgatGCCCAGTCTTCCTACCGCTGTTGCGTGAGAGGACCATTTTAAATAAGGATGCTGCTCCCTTCGTTACGGACGTTGGTGTCGTGTGGCTGTCGAAATGCTGGGAGAGGATTTCAGCAGAGCAATCGGACTCCTCATTTGCGGCAATGGCTGGCGAAGAGAAGCCAGCACTCCATCACAGCAGAGGCAGGAGCCAACACAGCTCCAGCTACAGTTCCCAACGCGGCCACCAATCGGATCCTCGGCCGATGGCTGTTGGGCTGCAGTGGACTGGTGGTCGGGGCAGTGGTGTTGGGAGGTGTCACAAGGCTGACGGAGTCAGGGCTCTCAATGGTAGACTGGCACCTGGTGAGAGAGATGAAGCCTCCTCAGACTCGGGCCGAGTGGGAGGCTGAGTTTGCCAAGTACCGGCAGTTCCCAGAGTTCAAAATAATGAACCATGACATGACTCTACCAGAGTTTAAGTTTATCTTCTACATGGAGTGGGGCCACAGGATGTGGGGCAGGCTGGTAGGGCTGGCCTATGTCCTCCCCACGATCTACTTCTGGAAGAAAGGCTACTTCAACAGATCTATGAAGGGACGTGCACTGGGACTCTGTGGATTTGTGTTCTTTCAGGGCCTCCTGGGCTGGTACATGGTGAAGAGTGGTCTGGAGGAGAAGCCAGAGTCCTATGATGTCCCCCGAGTCAGTCAATATCGCTTGTCTGCTCACCTAGGGTCAGCTCTGCTGCTCTACTGTGCTAGTCTATGGACCGGACTCACACTGATGGTCGAGCCGCACAAGTTGGCTAATACTAAGCGTCTGAACCAGTTGAGGAGGTTTGCTAAGGGCACTGTAGGATTGGTCTTCCTCACGGCACTCTCAGGTGCGTTTGTAGCAGGGCTGGATGCTGGGTTGGTGTATAACTCTTTCCCTCTGATGGGAGACAGATGGATCCCTGATGACCTCCTGGCCTTTTCTCCAACACTCAAGAACTTCTTTGAGAACCCCACCACTGTTCAGTTTGACCATCGAGTTCTGGCAATTTCGTCTCTGACGGCCATCACAGGTCTCTATATGTTCTCCAGGAGGATGATGCTACCTAGGAGAGCTAAGATAGCCATATCCTGCCTTACAGCTATGGCCTAtgcgcagGTTGCCCTGGGCATCAGTACCCTGCTTCTTTacgtgcccactcccctggcaGCGACCCACCAGTCAGGCTCTGTCGCCCTGCTCTCATTGGCCATCTGGGTCCTCGCAGAGCTCAGGAAGGTGGCCAAGTAGATGCCCACTTTGCCATGACTCCATCAGGCCTCCAGAGACAAACCAGTccaagggggaaaaaaagaagaagaatatTGACAAGATGCtccaggaagaaagagaggagagaatcatTCTATAAAACAATGGATTGGGTCTTTTGATACTATGTCAGTGAACTTCTATGTTGCAAAGCTGCAAGCTCCTTCCACCGGTTTGAAGTTCTATCATAACATTAGAATTCAGTTATATAAAGGTTGTTTTGGTTGATGCAATGGCAAGAATGTTCAAGCTTATTTCACTACCTTTTTCCCCAGCAGTGCAGTGGTTGGGCCAGGAGGTGAGTCGCCTGTAGTTTAGAAATCTCACTGAAAGGCATTACTACAGCTGACGACAGATTACATTTCAATGTCACTAGATAGCGACTATTAATAAACTGAAATTGAGTTGAGCAgtgtagaattttagcaaccaggaaattagcGATTTACACTAGATGACACGGCCACAAATTCAGAACAGCTTTCCAAGTTTTAAAACAGATTTGACTCCGGCGGGAGAAATCAATAGGTGAATATCACAGCCGATCACAACACCGGCGggtaagtaatactgtgaaacactGATTCCACTGTTAGTGGCAGACATATTACGGACATTTTCATAAATTATATTGCAAAAATTCTAAAACTAAATCCTATGTTGGCACATTTTaacgccttcagaaagtatttatacacctggacttattccacattgttgttacagcctgaatttcaagAAAAAAAAACCTCATCCCtctatagtgcattcggaaagtattcagaccccttcaacttttccacattttattacgttacagccttgttctaaaattgctaaagtttttttttattactcttcacactaccccataaagatcatatttacataagtattccgactctttactcagtactttgttgaagcacctgttttcattttgtcattatggggcattgtgtagatgggtgagaattattattttttgatttCAGGCTGGAACGCAAAAGTCAACTGATCATTTAAGGCTTGCATACAATAATTACATAATACTAACGGGTAcataggaagtgtgtgtgtgccttttgcTTCTGAAAAGGACAGGACATGAATGCTTTTGACTTATTGAGTTGTGTCTCATCCTTTGACTTCTGTCTGTTTCTGCTGATCAATGCACTGCCTCTTGATTTTTCTATATTTTCATACTGAGGTGAATATTAATGCTTGCGgtaccacagatctaggatcagttaccCAACTCCCCAATCCTTACCTGAACGATTGAGGTATACCGGCATATCTGAGCCAGGATCAGTGGCTGGAGGGCAATCTTTGTATGTTAAATAATGTATTATATATTGGTTTAGGACACTTGTGTTGGGTATGTGTGTGATAAATACATATGGAATCTTGA

Function

NR:

description
cytochrome c oxidase assembly protein COX15 homolog

GO: NA

KEGG:

id description
K02259 COX15, ctaA; heme a synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580145.2 True 2777 mRNA 0.46 9 10491410 10506579

Neighbor

gene id symbol gene type direction distance location
LOC118943896 NA coding upstream 52072 10432931 ~ 10439338 (+)
LOC110502264 tiar coding upstream 249500 10219797 ~ 10241910 (+)
LOC110531625 LOC106577355 coding upstream 527076 9957640 ~ 9964334 (+)
LOC118943871 NA coding upstream 1126654 9364151 ~ 9364756 (+)
LOC118943920 NA coding upstream 1127554 9347390 ~ 9363856 (+)
LOC110502251 hps6 coding downstream 416980 10923559 ~ 10930057 (+)
LOC110502248 pprc1 coding downstream 524183 11030762 ~ 11070120 (+)
oga mgea5 coding downstream 573761 11080340 ~ 11111754 (+)
npm3 npm3 coding downstream 607017 11113596 ~ 11116281 (+)
zdhhc16a LOC106604325 coding downstream 685015 11191594 ~ 11206167 (+)
G1828247 NA non-coding upstream 97325 10393646 ~ 10394085 (+)
G1828243 NA non-coding upstream 101796 10389370 ~ 10389614 (+)
G1828241 NA non-coding upstream 105682 10383208 ~ 10385728 (+)
G1828239 NA non-coding upstream 109715 10381409 ~ 10381695 (+)
G1828238 NA non-coding upstream 110245 10380965 ~ 10381165 (+)
G1828757 NA non-coding downstream 246401 10752980 ~ 10753653 (+)
G1828763 NA non-coding downstream 250398 10756977 ~ 10757180 (+)
G1828828 NA non-coding downstream 293868 10800447 ~ 10800845 (+)
G1828957 NA non-coding downstream 392003 10898582 ~ 10898832 (+)
G1828959 NA non-coding downstream 393210 10899789 ~ 10900057 (+)
G1828208 LOC106604487 other upstream 89239 10394478 ~ 10402171 (+)
G1828033 NA other upstream 425098 10035682 ~ 10066312 (+)
G1827493 NA other upstream 1061278 9428744 ~ 9430132 (+)
LOC118943850 LOC106560822 other upstream 1317016 9161595 ~ 9174397 (+)
G1829089 NA other downstream 705118 11211697 ~ 11220145 (+)
G1829147 NA other downstream 770298 11276877 ~ 11278445 (+)
G1829155 NA other downstream 780911 11287490 ~ 11288151 (+)
G1830068 NA other downstream 1351662 11858241 ~ 11858662 (+)

Expression

LOC110502253(LOC106604458) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC110502253(LOC106604458) Expression in each Bioproject

Bar chart with 21 bars.
LOC110502253(LOC106604458) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network