LOC110502241 (LOC106605260)


Basic Information

Item Value
gene id LOC110502241
gene name LOC106605260
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 11230940 ~ 11249201 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039201.1
gagccagaacagcttcattgcaccttggcatagattttacaagtgtctggaactcgtttggagggatgtgacaccattctttcACGAGAAATTCCATGATTTtgctgttttgttgatggtggtggaaagcGCTGTCTCAGGCGCTGCTCCAGAATATCCCATAAacgttcaattgggttgagatctggtgactgagacgaccatggcatatggtttacatcgttttcgtGCTCATCAAATCGTTCaatgaccactcgtgccctgtggatgggggcattgtaaTTTTATGGGGAATTATTTATCTCAAATGTTCTTCATCTAAATAAAAATCTGGAAATATATGGCCTGAACAATTTTCTATTGTAGGGTTCTTAATTAACTATATTTACATACATGCATGTATACCATTTTATGGCTGTCTGTTTTAAGAGAAATGGTTGATTAAGCTAAAAATTATATTTCTTGCTGCTGCTGTTTATACTGCGCATGCGTTTCCGATTAATTTGTCGTCGGGACAGTGAACGCTGAGTGAAAGGCGATTAAATCTATAAACAAGCTGCAGATTGATTGCATGGATGAATCCACATGTTTACCTTATCAGACACGGCGCAGGGCGTTTTCAATCTATTGCAAGTACACCAACTCTAGTTTTTATACCGCGGCCTTTTTTATTCGAACGAAAAAATAATCTAGTTTTGGGACGCAGGGGTCAGAGCAGGCACAGTCTTGGGCctgtgtgaagctagccacaataaggattagccatgCTAGTGGAAtgtgcggtttgccttcaaaataaaagttgcCTCGTTGAAAGTGATTCAAACGGATACAACAAATAGTGGAACCATTTCATATTTTGACCAGATAACGCTTAACAAGGTCGGAATGTTATTAAACAAAATGCAAtaatgtgtagattgaggggaaaaaaacgacttaatcagttttagaataaggctgtaacgtaccaaaatgtggaaaaagtcaaggggtctgaatactttccgaatgcactgtaagtctccaatgcaattctaaagtctaATACATCCAGAGTACTAATTCAACGGATGTTTTCTTTTTTGTGTCAAATTAACTAAATCTTGTCTTTCGTTGAATTTTTATAGAACATTCCGACCCTGTTTAGCATGAtctaaataaagttttttttatatatatatattttttaaatctagtcCATGATTCCACAATTTATATCCGTTTGAATCACGTTCAATGGGGACCTTTATTTTTAAGGCGAACCTCAAATATCCCGATTGTGGCTATTCCTTATTACGGCTAGCGCCACACAGGTCAGGCTTGGCACAACGGCTGTGAGAATAGGCACCTGTTGGCGCAAAGGTGACAGGACAGAAACAGCGCAAAGCTGCTGACTCGTGTCTCATCTCACGTATCGCTGCAGCTGAATCCAGAACTAACTTTGGAGTTTAAGTTATTTGGATGTGGCAAGCCAACTGCAGACAAATGCTGAGTTTAACGAACTGGATATCTGAGACCGTCATGGGCGGGTGTGTGGGGAGGGATCAGCTGGACGGACCAGGGCCTGCCAGGACCTCTACATGGAGCAAAAAACGAGGAGGACGCAATGAGCCCCTTAAGAAGGAGTGCCCTAAATGGAAGAGTGAGTACCCTATGACCGAGGGCCAGCTGAGGAGTAAGAGGGATGAGTTCTGGGACACGGCTCCAGCCTTTGATGGCAGGAAGGAGATTTGGGACGCGCTCCGAGCGGCAGCAGTGGCTGCAGAGGTTAACAACCTGGAACTGGCTCAGGCCATAGTGGATGGAGCCTGCATCACACTACCACACGGTACGCTGACCGAGGGTTATGATGAGCTGGGGAACCGCTACCAGCTTCCTGCTTACACTCTAGCCCCTCCCACCAACCTCATCACTGAATGCACCAATGAGAGCCAAGCTCCCAATCTAAAGGAGCAGAAAaagcctccccctcctcctaaAGAGGAGTTCCAGCTACGAGTACGTCTCTCGTGCGGTAAGGACCTACGTATAAGCGCCTCCATGTCAGACTCCATTTCCCAGCTGAAGACAGCCCTGGAGGGGCAGGAGGATATTGAAGCGGCCCACCAACGCTGGTTCTTTGCAGGGAAACTACTAACAGATAAGACCCGGCTCCAGGACACTAAGATACAAAAAGACTTTGTGGTCCAGGTCATCGTGAACAACTACTCACCCGTAACCAAACTCATAccaaactgagagagagagatgtgacgCAAGGCCTTGTTTCACTCCTCTGGAAGTTAAGTGTTCATTAGCGCACACTGTAgggaaatgttttgcaacagaaaacaaacatgtttttattgtACATGTTCAGATAGTTCCTCCAAGTTTCGGACCACTTTCTAACATTTCACGTCTAGTGGACACGACCCTGAACTGTTGGTTACTGCGAAGGAATTTGGGCCTGGCAAAGAACGGACAAACTGTAGACTGAACTGGAAGAGAATCATGGCATGAGGAGAATTTACTAcagtgcgtctgtctgtctgtccacagaTTATCCACTACCATTACACCTCTGTCCCCGACAATATATAAATTATTTTCCTTGTGATTGTGTCCTTGTGTTCATCTGGAACTTTAAACTATGAATAGGGTTGGACAGTGGAAAGTATCCTGCCTGACGATACAAATATTCTATTGGATCTCCATTTATACTGAAAGCCATTCTATTTGTACTATTTCTATTGTCTGATTGTTACATAATGGTAAAGAAGAATATTGACAGATTTATGaaagaatgtttacatactgtttcaaTGCGTGTTTAATTGTGAGTATTTATATATTTAATAAGCAGAAATGTATTTTTAAGTGAAAATGTTCATGAAAAGTCAATGTGATGAACAAGTGAAAATACTGGTTTATAAGGTGGAAATAGCTGATTTGAATTTCTCTATTTTTCCAACCAGGTATGGATAACATGCTGTAGTTTTGTATGCTCCAAAGTGCACTAAAAGTGGATGAATATTTGTGAATGAATTTATGAATAAACATTCTaaa
>XM_021580120.2
agccagaacagcttcattgcaccttggcatagattttacaagtgtctggaactcgtttggagggatgtgacaccattctttcACGAGAAATTCCATGATTTtgctgttttgttgatggtggtggaaagcGCTGTCTCAGGCGCTGCTCCAGAATATCCCATAAacgttcaattgggttgagatctggtgactgagacgaccatggcatatggtttacatcgttttcgtGCTCATCAAATCGTTCaatgaccactcgtgccctgtggatgggggcattgtaaTTTTATGGGGAATTATTTATCTCAAATGTTCTTCATCTAAATAAAAATCTGGAAATATATGGCCTGAACAATTTTCTATTGTAGGGTTCTTAATTAACTATATTTACATACATGCATGTATACCATTTTATGGCTGTCTGTTTTAAGAGAAATGGTTGATTAAGCTAAAAATTATATTTCTTGCTGCTGCTGTTTATACTGCGCATGCGTTTCCGATTAATTTGTCGTCGGGACAGTGAACGCTGAGTGAAAGGCGATTAAATCTATAAACAAGCTGCAGATTGATTGCATGGATGAATCCACATGTTTACCTTATCAGACACGGCGCAGGGCGTTTTCAATCTATTGCAAGTACACCAACTCTAGTTTTTATACCGCGGCCTTTTTTATTCGAACGAAAAAATAATCTAGTTTTGGGACGCAGGGGTCAGAGCAGGCACAGTCTTGGGCctgtgtgaagctagccacaataaggattagccatgCTAGTGGAAtgtgcggtttgccttcaaaataaaagttgcCTCGTTGAAAGTGATTCAAACGGATACAACAAATAGTGGAACCATTTCATATTTTGACCAGATAACGCTTAACAAGGTCGGAATGTTATTAAACAAAATGCAAtaatgtgtagattgaggggaaaaaaacgacttaatcagttttagaataaggctgtaacgtaccaaaatgtggaaaaagtcaaggggtctgaatactttccgaatgcactgtaagtctccaatgcaattctaaagtctaATACATCCAGAGTACTAATTCAACGGATGTTTTCTTTTTTGTGTCAAATTAACTAAATCTTGTCTTTCGTTGAATTTTTATAGAACATTCCGACCCTGTTTAGCATGAtctaaataaagttttttttatatatatatattttttaaatctagtcCATGATTCCACAATTTATATCCGTTTGAATCACGTTCAATGGGGACCTTTATTTTTAAGGCGAACCTCAAATATCCCGATTGTGGCTATTCCTTATTACGGCTAGCGCCACACAGGTCAGGCTTGGCACAACGGCTGTGAGAATAGGCACCTGTTGGCGCAAAGGTGACAGGACAGAAACAGCGCAAAGCTGCTGACTCGTGTCTCATCTCACGTATCGCTGCAGCTGAATCCAGAACTAACTTTGGAGTTTAAGTTATTTGGATGTGGCAAGCCAACTGCAGACAAATGCTGAGTTTAACGAACTGGATATCTGAGACCGTCATGGGCGGGTGTGTGGGGAGGGATCAGCTGGACGGACCAGGGCCTGCCAGGACCTCTACATGGAGCAAAAAACGAGGAGGACGCAATGAGCCCCTTAAGAAGGAGTGCCCTAAATGGAAGAGTGAGTACCCTATGACCGAGGGCCAGCTGAGGAGTAAGAGGGATGAGTTCTGGGACACGGCTCCAGCCTTTGATGGCAGGAAGGAGATTTGGGACGCGCTCCGAGCGGCAGCAGTGGCTGCAGAGGTTAACAACCTGGAACTGGCTCAGGCCATAGTGGATGGAGCCTGCATCACACTACCACACGGTACGCTGACCGAGGGTTATGATGAGCTGGGGAACCGCTACCAGCTTCCTGCTTACACTCTAGCCCCTCCCACCAACCTCATCACTGAATGCACCAATGAGAGCCAAGCTCCCAATCTAAAGGAGCAGAAAaagcctccccctcctcctaaAGAGGAGTTCCAGCTACGAGTACGTCTCTCGTGCGGTAAGGACCTACGTATAAGCGCCTCCATGTCAGACTCCATTTCCCAGCTGAAGACAGCCCTGGAGGGGCAGGAGGATATTGAAGCGGCCCACCAACGCTGGTTCTTTGCAGGGAAACTACTAACAGATAAGACCCGGCTCCAGGACACTAAGATACAAAAAGACTTTGTGGTCCAGGTCATCGTGAACAACTACTCACCCGTAACCAAACTCATAccaaactgagagagagagatgtgacgCAAGGCCTTGTTTCACTCCTCTGGAAGTTAAGTGTTCATTAGCGCACACTGTAgggaaatgttttgcaacagaaaacaaacatgtttttattgtACATGTTCAGATAGTTCCTCCAAGTTTCGGACCACTTTCTAACATTTCACGTCTAGTGGACACGACCCTGAACTGTTGGTTACTGCGAAGGAATTTGGGGTAAAATATTTGATGATTAGTTTACGTTTGCTTTTGTATTTCCTATCCTCTTTTTGTATTTCCCAATATTTTCCTAATAATCCCACATTGTTAATTTGTGTATTTTCACTCCGTATGTGTAGCCTGGCAAAGAACGGACAAACTGTAGACTGAACTGGAAGAGAATCATGGCATGAGGAGAATTTACTAcagtgcgtctgtctgtctgtccacagaTTATCCACTACCATTACACCTCTGTCCCCGACAATATATAAATTATTTTCCTTGTGATTGTGTCCTTGTGTTCATCTGGAACTTTAAACTATGAATAGGGTTGGACAGTGGAAAGTATCCTGCCTGACGATACAAATATTCTATTGGATCTCCATTTATACTGAAAGCCATTCTATTTGTACTATTTCTATTGTCTGATTGTTACATAATGGTAAAGAAGAATATTGACAGATTTATGaaagaatgtttacatactgtttcaaTGCGTGTTTAATTGTGAGTATTTATATATTTAATAAGCAGAAATGTATTTTTAAGTGAAAATGTTCATGAAAAGTCAATGTGATGAACAAGTGAAAATACTGGTTTATAAGGTGGAAATAGCTGATTTGAATTTCTCTATTTTTCCAACCAGGTATGGATAACATGCTGTAGTTTTGTATGCTCCAAAGTGCACTAAAAGTGGATGAATATTTGTGAATGAATTTATGAATAAACATTCTaaa

Function

NR:

description
ubiquitin domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039201.1 False 3051 mRNA 0.42 6 11230940 11249201
XM_021580120.2 True 3172 mRNA 0.42 5 11230941 11249201

Neighbor

gene id symbol gene type direction distance location
zdhhc16a LOC106604325 coding upstream 24773 11191594 ~ 11206167 (+)
npm3 npm3 coding upstream 114659 11113596 ~ 11116281 (+)
oga mgea5 coding upstream 119186 11080340 ~ 11111754 (+)
LOC110502248 pprc1 coding upstream 166588 11030762 ~ 11070120 (+)
LOC110502251 hps6 coding upstream 300883 10923559 ~ 10930057 (+)
LOC110503079 znf488 coding downstream 14521 11263722 ~ 11268145 (+)
LOC110502239 mapk8 coding downstream 213076 11462277 ~ 11496115 (+)
wdfy4 wdfy4 coding downstream 297672 11546873 ~ 11726447 (+)
LOC110502228 ap3m1 coding downstream 1008614 12257815 ~ 12276208 (+)
pcbd1 phs coding downstream 1259038 12508239 ~ 12511172 (+)
G1829089 NA non-coding upstream 10795 11211697 ~ 11220145 (+)
G1829068 NA non-coding upstream 56122 11123321 ~ 11174818 (+)
G1829071 LOC106604342 non-coding upstream 96171 11128216 ~ 11134769 (+)
G1829018 NA non-coding upstream 228862 11001322 ~ 11002078 (+)
G1829149 NA non-coding downstream 32594 11281795 ~ 11282068 (+)
G1829152 NA non-coding downstream 34525 11283726 ~ 11284106 (+)
G1829163 NA non-coding downstream 47796 11296997 ~ 11297307 (+)
G1829537 NA non-coding downstream 166656 11415857 ~ 11416057 (+)
G1829538 NA non-coding downstream 167009 11416210 ~ 11416513 (+)
G1828208 LOC106604487 other upstream 828769 10394478 ~ 10402171 (+)
G1828033 NA other upstream 1164628 10035682 ~ 10066312 (+)
LOC110531625 LOC106577355 other upstream 1266660 9957640 ~ 9964334 (+)
G1829147 NA other downstream 27676 11276877 ~ 11278445 (+)
G1829155 NA other downstream 38289 11287490 ~ 11288151 (+)
G1830068 NA other downstream 609040 11858241 ~ 11858662 (+)
G1830301 NA other downstream 813778 12062979 ~ 12065949 (+)
G1830449 NA other downstream 1058365 12307566 ~ 12307966 (+)

Expression

LOC110502241(LOC106605260) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110502241(LOC106605260) Expression in each Bioproject

Bar chart with 21 bars.
LOC110502241(LOC106605260) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
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Co-expression Network