XLOC_037373 (ctdsp1)


Basic Information

Item Value
gene id XLOC_037373
gene name ctdsp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 41690153 ~ 41741420 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073539
GAGTTCCATGTTTGTATGTTGAAATTGAGAGCAGAGCCGAACTCCATGTTGTGAAAAGTTATCATCAAGGAACTAaactttttatcattatttttattccgTTTTCTTTTTGTCGTCTAACTTATAACAGCACAGACATCGCAACCTGCCTCGAACGGTTTTCATTATGACTTCTTTTAAGCGGTAAAAGTCTTGTGGATTTCTGGGGGCATTTGCAGGGAgttttcttcatcttttttttcaattcaatcgTAGCCAGCGGAAAGATTTTAATACGGAAAACCTTTTTAAGTGTCGATTGTACTGGCTTTACGGATCTCATGGACCACCCGTCCTCCTCGATCATCACACAAGTGAACAGAGATGAAGAAGCGACTGCTCCTTTGCGCGACAGAGGTACCCCTCCACATGCTGCATCCTCATCGAAGAAACCACGCAGTCGTGGGATTTTCCACAGTCTCTTCTGCTGCCTGTGTCATGATGAAACGGATCACGTGCCTGTCAATAATAACGCCCCACTGCTGGTGGAAGAAAATGGAACCATCTCTAAAGTCCCAGCCAAACCACTTCTTCCACAGATAAAGTCTAAAGATGTAGGGAAGATCTGCGTAGTAATTGATCTGGATGAAACACTAGTCCACAGTTCATTCAAGCCAGTAAACAATGCTGACTTTATCATTCCAGTGGAAATTGATGGGACGGTACATCAGGTGTACGTGTTGAAGAGACCTCATGTTGACGAGTTCCTTAAACGGATGGGGGaactgtttgagtgtgtgttgttCACTGCAAGCTTAGCCAAGTATGCTGATCCCGTCTCGGATCTGCTGGACAAATGGGGAGCTTTCCGAAGCCGTCTTTTCCGGGAATCCTGTGTGTTCCATCGCGGAAATTATGTGAAGGACCTAAGCCGTCTAGGCAGGGATCTCAACAAAGTCATCATTGTGGACAACTCGCCAGCCTCCTACATATTCCACCCAGACAATGCTGTACCTGTAGCCTCCTGGTTTGACGACATGTCTGACACAGAGCTGCTGGATCTCATCCCGTTTTTCGAGAGACTGAGTAAAGTGGATAACGTCTACACTGTGCTCAAGCAGCAGAGGACTACTAGTTAGCATGACACTAAAAGCAGCTGTCACTTTGGGGCCAGGGAGGCTGCGGGGCCCGGAGCGCCACACTGCTTCCCCCTAACAGGACCAGCCACTAGCTCAGTCCTCATCACCTACCCACAATTCCATTCACATGATTGTttgatagaaagagagagagagtaaagacAGAACTGTGAAGGACTGCTTTATCCATTACATGCATAAAACAGTGAATCAAGAAGCTGATTGTTTTGACACTCGATTGGGTGAACTTTTTAGGAAAGCTGCCGAAAAGTTTTCACAAAGGAAATcgtattttgtttaaagaaaacGCAGCAGCCAAGCACATTTCCCCCCGATTTTTGTATTAATGCAGGAAATGCAAACTTATATATTACtgtaatgtgtaaaaaaaaacatgataatatattaaaattgtattgtatttatacaTTATGGTTGTATTTGTTGTACTgcctttaatttatttgttaaaaagtaCTGTATCAAAGTAATGAAAACTGCCATTGTGAATAATGATGGATAAAAGCTATGTCCTGAAGCATTAATGTAATAATATGGGGGAAATTTGTTTAATTGTCTTGAAAATTATTATATAAGTATGCTGTTTTCTTTAGAcaatttattatttctatttgatTCAGATGTGAAAATGTGGCTCATGAGATTTCACCCAAAGATGTGTGACTCCTTTGCCAAACTCTTCATTTTCATGGTCAAGGGAAGCCCTGTTAAATGAAACCAGTTTATTGTCCTGTTTGGTTGGTGATTAGAGAATGTTTCTTCAAGAAATTACTTTCTACTCTTGGGCTCATATCTTGAGTTAAACCACTCATTCCCTGTGTTTAATAAGTTTACCTCAAGATTAACCCATGAATGGCAATCATATTGAACCATATGCTGTTGTTCTTATTTTTTAATCTAGACAACGTTATTGGGCTCTGAAACAAGCATTCATTTTCCCTTTAATTTTCCTTCTCCGTTTAAGTTTCTAAACCAGATATTGGAAAAAGTCTTGATGCAATCAGCCAGCACTTGAAATTCCAAGTTTTGCAAAGCAACAGATGCAAGAAAGGGAAATCGGCCTGTGTCGCGTGGTCTGTTTTCACCCCGAAGGTTAAAGCTAATGCACCTTTTGTATCATATACAGTATGCTTTATTTTGTCTAATGCGAGGTCCTTCATTGTGGCCTTAAATTACTGTAGCAAAAAAAGTAAGACAAATATCAAAGCGGTCTTCTTTACAAAATCAGTTTGTTCGatactgtattgttttaaattcatAACAGTATGccatttgtgtgtttatattaatCAAAGCAGGTAAAGAATACTGGAATCAAAGCTTGATTTGTCAGTGGAAACAGATATTCGTAATGCCTTAACTCTCCATTAGATCACTAAGCTGTCAGATGGTTGGTTGAGAAAGTGATTTGGTCATTGGCTTTAAGCATGCTGTACCGTGGACTGGAGAGCCCCTGTTATTGACGTGCCTTCTTGGTAATTGTGCCATTTTAATATGGATGGTTTTCCTCGTGGGGATTGAACATCTGCTCAGCTCTGAGTCTGGGCTGATTGTTTTTGCAAGTGCCAATGTTGATGTTTTGAGCAAAAAATGGTGATTCATGTGTCCAGGAGAGAGTGGAATGACGATGTTATGGTTTTTAATACTGGTGTTTTGTCCATTTTTCAGTGTTTGACTTTTTAAATAGACTCTGTGATGGCGAAACACTCGCTGTCCTTCTATATTTGTCATATTAATGAAAATAGTGCTGTgccatggagaaaaaaaaaatgattttgttaTTCATAAAAGCTTAAATGACAA

Function

symbol description
ctdsp1 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSP1 (CTD small phosphatase 1).

GO:

id name namespace
GO:0008420 RNA polymerase II CTD heptapeptide repeat phosphatase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-523 Predicted to enable RNA polymerase II CTD heptapeptide repeat phosphatase activity. Orthologous to human CTDSP1 (CTD small phosphatase 1).

Ensembl:

ensembl_id ENSDARG00000040674

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073539 True 2942 mRNA 0.40 7 41690153 41741420

Neighbor

gene id symbol gene type direction distance location
XLOC_037372 dre-mir-732 coding upstream 7143 41682926 ~ 41683010 (+)
XLOC_037371 spegb coding upstream 9100 41612642 ~ 41681053 (+)
XLOC_037369 BX571827.3 coding upstream 91326 41509948 ~ 41598827 (+)
XLOC_037370 BX571827.2 coding upstream 96543 41593496 ~ 41593610 (+)
XLOC_037368 nemp2 coding upstream 208503 41459759 ~ 41481650 (+)
XLOC_037375 BX927363.1 coding downstream 46797 41788217 ~ 41806355 (+)
XLOC_037376 col18a1a coding downstream 80193 41821613 ~ 41979505 (+)
XLOC_037377 BX247868.1 coding downstream 248666 41990086 ~ 42038319 (+)
XLOC_037378 pcbp3 coding downstream 299137 42040557 ~ 42127228 (+)
XLOC_037379 NA coding downstream 360781 42102201 ~ 42108086 (+)
XLOC_037367 BX649377.1 non-coding upstream 423310 41249457 ~ 41266843 (+)
XLOC_037359 BX323586.1 non-coding upstream 792970 40895649 ~ 40897183 (+)
XLOC_037381 NA non-coding downstream 416956 42158376 ~ 42158616 (+)
XLOC_037383 NA non-coding downstream 607538 42348958 ~ 42500284 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_12130688_12146560 CTDS1, CTDSP1 coding CI01000009 null 12130688 ~ 12146942 (+)