LOC118943913 (drgx)


Basic Information

Item Value
gene id LOC118943913
gene name drgx
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 11798161 ~ 11807866 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960825.1
gcgagagagagaggtagagtaaaAGGAAAAGGAAGATGAACTCAGAGAGGGATGttgagggggaaagaggggagtgAGTAATAACGAGAGTGATAGAGGTTGTAGAgatagtgggacagagagagagactgtgactGGAACTGGAACTGCCGGTTCCTGAGACAAACAGGAAACTTATCGCGCCCTCTCAgcatcctctcctcctcgctccctGGACCAGCGCAAGACAAATACTCAGCAGATTTCTCCATGACATCAGGCTTTTGTCCACACAGAACCACAGATAAACGAAGCCACCTAGAAAACCATAATGTTTTACTTCCACTGTCCCCCTCAGATGGATGGAGAATGTTGTCGGACTAATACATTGAACACCAACGGGTTTGCCAACCATTCGTCAGCAGATGATTTTGACGATGGCTTTCTTCGGAGAAAACAGCGTAGAAATAGAACAACATTTACACTGCAACAGTTGGAGGCTTTGGAGGCTGTGTTCACGCAGACTCACTACCCCGATGTTTTCACACGCGAGGAACTGGCCATGAAGATCAACCTGACTGAGGCACGTGTccagGTGTGGTTCCAGAATCGTAGGGCCAAGTGGAGGAAGACTCAGAGAGGGAGTACAGACCCCGACGGAGGTAAGGAGCAGATTAACGAGGGAGGCACTCCTCCGTCCAGGAGTCTGAACTCCCAGTCTCCTGTGGACCAGAGCAGGAAACAGAAGGAACCTCTGGAGATGCAGCAGAGtatAAACCGAGCAGTAGGTTCTGGTGGGCCGTTCTTCCCATCCTGTCTACCAGGGACCCTCCTGAACTCAGCCACCTATGCCCAGGCGCTGTCGCATGTTGCCACAATGAAGGGAGGTGGTCTGTGCTCTTGCTGTGTTCCTGATCCCATGGGCCTGTCCTTCTTGCCCCCCTACGGTTGTCAGGGTAACCGTACAGCCAGCGTGGCAGCCCTGCGGATGAAGGCCCGTGAGCACTCCGAGGCCGTCCTGCAGTCAGCCAACCTGCTGGGGAATGGCCATGGGCATGGCGCTGGAGTAGGAGGCCTGCCCAGGGTCGTGGTATCCGGGGATGGGTTGAAAAGGCCCAGGATGGAACCTGCCCTGGGAGTCATATCTGGATCAGTGTCTGGTGTTTCTGAAGccgtagggggaggagcaggggGCGGACTTACTCTCAGCCCAGGCTCCAAGGCCCCGACTCAGGGTAGAGGGTCTGACATGCACCCCCTCTGCCCCAAGGAACCACTGGAGaaaaagtgagtgtgtgtgtctgtgttcgctGCCAAGAGGAAACAGACGTACGGACAGTGAGGATGTACAGACAGACGTACGGACTGGGACTTTAACTCCTGTAGTGTGACTGTGCCTGTTGTTAtgacctctttccctctccctactCCCCCTAAAGCACAAATATGGACCTATTCCTACTGTAACAGGGTGAGGAGTGGGTGCCCAGATATCATACTATATGGATTTAACTATCAAGATATTTATTTGATTGTGATTTATTTATTGTGGGTGAATATTGCTGAATGCCGTGGGCTGTTGCTGAACCTTTATAATGGACTCTATATGGGCTCTTTGTAAGGGATAACTtgaatacattgtgtgtgtgtttgtgtatgtgtgtgtttgtgtgcgtgtgcttgtgtgtgtgcgtgtgtgaacaGAGACCCTGGCTGATGTGAATCTGAggcatttctctttctctctcaccttgGCTACACACTCCTCCTTGTGTATTATTAGAGTATTGTGTTACAGAACGTCACCAGACAATGTAACATATTATGTTTGTGTTCTTATGACCACATGTAAAACACAATGTGAAATATTGACGATTCCATTGTTTCACTGGAGCTATGGTCATTTATTGTTCAGGTTTTTAGGCTAGCGACCAGAGAGAACTACAActcattatttatttatcttgtttAACTGATAGAGACAGTGCACATGAATCAACATATACATTTTCACATCAGTTGAAGCTGATGTTGCTTCGTTGTCCCTTGGCTAATATATATGATACAACAGTTGTGTCGATATCAGGGCTGTTGCTAATATTTCTTCAGTCTGTTAGCACTTCTGTAGTGTTAATAGCGTTAGCCGAACCCAGATCACTTTAGTCCTGTTGTCTAAAACAATTAAAGATGTATTCTCTCCTGTTGCCTCCCGCCACAGCCATCTGCTCCTATCCATTATTCATCAGCTTCCCTTAAAGCTGGAGAGACGAGAGCGATCATTGTTcttattatttatttacttttaggAACGCCAACGCCACTCactgcttttcttttctctctctctccctctctcactctctgtctcttactgcctctctctagccttctccacctctccctctctctcacatggctccccctctctctctccctctctctcacatgcctcccctctctctctccctctctctcacatgccttcccctctctctctctctctctcactctctcatgaGATGCATCGCCAGGTTTCAATAACCCATTGAACATGATACATGCTAATCATTCATGCCTAAATGTATATTTACAAAACACTTTTTTAAATACCCAGAGCCTCCTTCATGGTTCATCAGCAATTGCTTATTAATTAATGAATGaatccttttatttatttattttattttgtactttTCCCCAGATCAGATTGAGAATATTTAACCGCAGCGAGAGAGAGCACATAGAGACCAGAACTTAGTCTGATTCAATTTGCGTCCTTTTCATGAAATCACTTTgttagtcaataacacaattaaGCAAACTACACACAAAATAGCATTAATAATTGATGGTGAATTGAGTATTACCACAAAGTACTGGGTTAATAATTAATTGTGAAGGAGACACCCTGGTGACATGGAGGAGGGAGATAATGTCAGAAGGCCAGGATGGAGCACTCAcacttttattttctctctctattcctctctctcctctcattctgtatctccctttctacccctctctctatttccccctgTATctttctttcatctctctctctttctctcttgtcttTCACACTGAAATCGACTGCATGCTGTGCATAGTTCATATATATTAATAAAGTGAAGATTTAATTGAATCTTTGAGTCATTGAGTTATATTGTTAATGTGTTTGTATGAGCAATAATTCTCTCTGGCTTATTTTGTTTTACACtttgtaaacaaaacaaaacaagtaaAACCTCATATGAAACAAAGATCCATGCATGTATTTTGTTGAGTGTGCATTATTATACTCTAAAATGTGTATACTATTGTGATGCTTCTATTCAAAACTTTAGACCAGTGATTGTGTTTTCCAATCTAAACTAAGTAGCAATGTAACTCATGTAACATTGACATGCTGGCCAGATTTATACAGTAAGGACAGGcgagtttatttgtatttttgcaTTACTCCAGTCATTGTAGCACATATTGTTCAAAATATCTACTATCCAA
>TU2095938
CTCTGGAGATGCAGCAGAGtatAAACCGAGCAGTAGGTTCTGGTGGGCCGTTCTTCCCATCCTGTCTACCAGGGACCCTCCTGAACTCAGCCACCTATGCCCAGGCGCTGTCGCATGTTGCCACAATGAAGGGAGGTGGTCTGTGCTCTTGCTGTGTTCCTGATCCCATGGGCCTGTCCTTCTTGCCCCCCTACGGTTGTCAGGGTAACCGTACAGCCAGCGTGGCAGCCCTG
>TU2095941
AATAGAACAACATTTACACTGCAACAGTTGGAGGCTTTGGAGGCTGTGTTCACGCAGACTCACTACCCCGATGTTTTCACACGCGAGGAACTGGCCATGAAGATCAACCTGACTGAGGCACGTGTccagGTGTGGTTCCAGAATCGTAGGGCCAAGTGGAGGAAGACTCAGAGAGGGAGTACAGACCCCGACGGAGGTAAGGAGCAGATTAACGAGGGAG
>TU2095946
cagagagagagggagagcgagagagagaggtagagtaaaAGGAAAAGGAAGATGAACTCAGAGAGGGATGttgagggggaaagaggggagtgAGTAATAACGAGAGTGATAGAGGTTGTAGAgatagtgggacagagagagagactgtgactGGAACTGGAACTGCCGGTTCCTGAGACAAACAGGAAACTTATCGCGCCCTCTCAgcatcctctcctcctcgctccctGGACCAGCGCAAGACAAATACTCAGCAGATTTCTCCATGACATCAGGCTTTTGTCCACACAGAACCACAGATAAACGAAGCCACCTAGAAAACCATAATGTTTTACTTCCACTGTCCCC

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960825.1 False 3486 mRNA 0.45 7 11798161 11807850
TU2095938 False 233 TUCP 0.59 3 11800683 11803131
TU2095941 False 220 lncRNA 0.53 3 11803198 11806136
TU2095946 True 348 lncRNA 0.49 2 11807009 11807866

Neighbor

gene id symbol gene type direction distance location
LOC110502235 LOC106604231 coding downstream 32595 11734088 ~ 11765566 (-)
LOC110502237 LOC106604271 coding downstream 251467 11529791 ~ 11546694 (-)
LOC110502238 arhgap22 coding downstream 282178 11494157 ~ 11515983 (-)
LOC110503077 LOC106576846 coding downstream 470455 11297727 ~ 11327706 (-)
LOC110503078 LOC106576847 coding downstream 507750 11285998 ~ 11290411 (-)
LOC110502234 LOC106604225 coding upstream 99977 11907827 ~ 11953940 (-)
znf511 NA coding upstream 287018 12094868 ~ 12098744 (-)
LOC110502230 LOC106604182 coding upstream 307249 12115099 ~ 12175948 (-)
LOC110502229 NA coding upstream 373688 12181538 ~ 12205662 (-)
LOC110503075 LOC105010677 coding upstream 411807 12219657 ~ 12254247 (-)
G1829960 NA non-coding downstream 19747 11778175 ~ 11778414 (-)
G1829955 NA non-coding downstream 24812 11772999 ~ 11773349 (-)
G1829934 NA non-coding downstream 47585 11750372 ~ 11750576 (-)
G1829933 NA non-coding downstream 49521 11748393 ~ 11748640 (-)
G1830010 NA non-coding upstream 10341 11818191 ~ 11818408 (-)
G1830022 NA non-coding upstream 17000 11824850 ~ 11825059 (-)
G1830024 NA non-coding upstream 18521 11826371 ~ 11826602 (-)
G1830033 NA non-coding upstream 26275 11834125 ~ 11834376 (-)
G1830038 NA non-coding upstream 28732 11836582 ~ 11836810 (-)
G1829918 NA other downstream 64235 11733430 ~ 11733926 (-)
G1829417 LOC106604325 other downstream 594165 11203067 ~ 11203996 (-)
G1827761 NA other downstream 2109317 9688457 ~ 9688844 (-)
G1827690 NA other downstream 2253188 9544383 ~ 9544973 (-)
G1827656 NA other downstream 2331671 9466070 ~ 9466490 (-)
LOC110502269 LOC106604550 other upstream 585113 12392924 ~ 12411810 (-)
LOC110502275 LOC106604599 other upstream 772966 12580816 ~ 12651383 (-)
G1833570 NA other upstream 2712499 14520349 ~ 14520929 (-)
G1834810 NA other upstream 3358359 15166209 ~ 15166919 (-)
LOC118943913 drgx other downstream 67 11798161 ~ 11807866 (-)

Expression


Co-expression Network