LOC110502234 (LOC106604225)


Basic Information

Item Value
gene id LOC110502234
gene name LOC106604225
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 11907827 ~ 11953940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960213.1
aacatctgctaatcacgtgtatgtgaccaataacattttatttgaggtAAAGCATGGGAAGTTTGCAAAGATTTTCGTAACACTTTGATTCAGGTCCAGAGATTTCTGATAGAGGAAACTCGCCTTGCCAGGGAGTCATAAAttaaatccacacacacacacttccatcttctgagaatgtgtgtgtatgagtccgcgtgcgtgtgtgcgttcgcgcgtgtgtgggggaggggtaaTTTGTTCATCCTCAGACACTCCCActttccctttcctcctctgcAGCGTGCATAACTTCAACACTCCGACCCACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGGGTTGTCAACTGATTTATTGGAGCCTGGTGGAGATAGATGCAAACCTACCAGCAGGACATTCCTCTGCATCCAGGTTGAGGCTTGCTACCAGCAGGAACATGGAGCACTCTGTGTCACTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTtcttcccggttttgacctttgaTTTGCCTGTTTTTTCTGGACTCCGTACCCGCCTGCCTGCCCCTTCTGCCTGCCCTGTCATCGAGCCTGTCTGCTACTCTTTACCTCTTGGATTCAGGATCTGGTTTTGACCTGAAAGaccggaaaatagctgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaaaaatgggagaaactctccaaatacggGTGTGccaatacccaagaagactctaggatGTAATTGCTGTCAAAGCTGCTTCAAGAATATACTgagtaaagcgtctgaatacttatgttaatgtgatatttcaacaaaaaatgttttggtacatttgcaaaaatgcttgaaaacctgtttttgctttgtcattacggattattgtgtgta
>XM_021580109.2
TCCCActttccctttcctcctctgcAGCGTGCATAACTTCAACACTCCGACCCACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGCTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTtcttcccggttttgacctttgaTTTGCCTGTTTTTTCTGGACTCCGTACCCGCCTGCCTGCCCCTTCTGCCTGCCCTGTCATCGAGCCTGTCTGCTACTCTTTACCTCTTGGATTCAGGATCTGGTTTTGACCTGAAAGaccggaaaatagctgtgcagcgacgctccccatccaacctgacagagcttgagaggatctgcagagaaaaatgggagaaactctccaaatacggGTGTGccaatacccaagaagactctaggatGTAATTGCTGTCAAAGCTGCTTCAAGAATATACTgagtaaagcgtctgaatacttatgttaatgtgatatttcaacaaaaaatgttttggtacatttgcaaaaatgcttgaaaacctgtttttgctttgtcattacggattatt
>XM_021580108.2
CTCCCActttccctttcctcctctgcAGCGTGCATAACTTCAACACTCCGACCCACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGCTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTGTAGGTTGTAATATGTAACATGTACTCTCCCATCACGCACGCTGAACAGCACTTATCCTGTCCATCGCGGAACCTTATCCTGTCCTTTCCAAAACCACCACCTCTGTTACCATCACCACTGGCACCCCTTATAGACTCCACCCCTGCTAGCGCCAAGTGCAATTATATCTGTGTGAGTGTATGTTTTTATCAATTATGTATATACCATTTTTTATTATCCTATTTCATCAGTAAAGAGCAATTTTTTGTTGCTGTTTTGGCCA
>XM_036960212.1
tgctaatcacgtgtatgtgaccaataacattttatttgaggtAAAGCATGGGAAGTTTGCAAAGATTTTCGTAACACTTTGATTCAGGTCCAGAGATTTCTGATAGAGGAAACTCGCCTTGCCAGGGAGTCATAAAttaaatccacacacacacacttccatcttctgagaatgtgtgtgtatgagtccgcgtgcgtgtgtgcgttcgcgcgtgtgtgggggaggggtaaTTTGTTCATCCTCAGACACTCCCActttccctttcctcctctgcAGCGTGCATAACTTCAACACTCCGACCCACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGGGTTGTCAACTGATTTATTGGAGCCTGGTGGAGATAGATGCAAACCTACCAGCAGGACATTCCTCTGCATCCAGGTTGAGGCTTGCTACCAGCAGGAACATGGAGCACTCTGTGTCACTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTGTAGGTTGTAATATGTAACATGTACTCTCCCATCACGCACGCTGAACAGCACTTATCCTGTCCATCGCGGAACCTTATCCTGTCCTTTCCAAAACCACCACCTCTGTTACCATCACCACTGGCACCCCTTATAGACTCCACCCCTGCTAGCGCCAAGTGCAATTATATCTGTGTGAGTGTATGTTTTTATCAATTATGTATATACCATTTTTTATTATCCTATTTCATCAGTAAAGAGCAATTTTTTGTTGCTGTTTTGGCCA
>TU2096134
CACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGCTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTGTAGGTTGTAATATGTAACATGTACTCTCCCATCACGCACGCTGAACAGCACTTATCCTGTCCATCGCGGAACCTTATCCTGTCCTTTCCAAAACCACCACCTCTGTTACCATCACCACTGGCACCCCTTATAGACTCCACCCCTGCTAGCGCCAAGTGCAATTATATCTGTGTGAGTGTATGTTTTTATCAATTATGTATATACCATTTTTTATTATCCTATTTCATCAGTAAAGAGCAATTTTTTGTTGCTGTTTTGGCCACCGGCTTCTCTGTCATTCAGGAGTAAGGACTGGGTTTAAAGTACGCATTGATGGGgctgagctggagagagagggaggattcaTAACAGG
>TU2096135
CACACTTTCACAGTGCGATCTGGACTCTACATTGAACAGATTATCCGACCGGTATCGTTAATCATGGATTTGAAATACTTGGCGGTTATGGCTGTGCTCGCTGTGGCGACATACGCTCCTTTCTCACAAGCTAAACCAATCAGTCTGGTGGAGAGGTGTTGGTGTCGTTCTACAGTTAACACCGTCCCCCAGCGCAACATCCGAGAACTGAAGTTCCTGCACACACCCAACTGCCCCTTCCAAGTGATTGCCAAGCTGAAGAACCACAAGGAGGTTTGTATCAATCCCGAGACCAAGTGGCTGCAGCAGTACCTGAAGAATGCCCTCAACAAGATGAAGACATCCAAGCAGACCAACTAGAGAGCCTGCAGGAAGACCTACCAACAGACATGTAACATGAGACGTGTAGGTTGTAATATGTAACATGTACTCTCCCATCACGCACGCTGAACAGCACTTATCCTGTCCATCGCGGAACCTTATCCTGTCCTTTCCAAAACCACCACCTCTGTTACCATCACCACTGGCACCCCTTATAGACTCCACCCCTGCTAGCGCCAAGTGCAATTATATCTGTGTGAGTGTATGTTTTTATCAATTATGTATATACCATTTTTTATTATCCTATTTCATCAGTAAAGAGCAATTTTTTGTTGCTGTTTTGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960213.1 False 1243 mRNA 0.47 6 11907827 11953940
XM_021580109.2 False 864 mRNA 0.47 5 11907834 11953685
XM_021580108.2 False 721 mRNA 0.47 4 11918169 11953686
XM_036960212.1 False 1086 mRNA 0.47 5 11918169 11953934
TU2096134 False 758 TUCP 0.47 4 11918079 11953633
TU2096135 True 666 TUCP 0.46 4 11918171 11953633

Neighbor

gene id symbol gene type direction distance location
LOC118943913 drgx coding downstream 99977 11798161 ~ 11807866 (-)
LOC110502235 LOC106604231 coding downstream 142261 11734088 ~ 11765566 (-)
LOC110502237 LOC106604271 coding downstream 361133 11529791 ~ 11546694 (-)
LOC110502238 arhgap22 coding downstream 391844 11494157 ~ 11515983 (-)
LOC110503077 LOC106576846 coding downstream 580121 11297727 ~ 11327706 (-)
znf511 NA coding upstream 140928 12094868 ~ 12098744 (-)
LOC110502230 LOC106604182 coding upstream 161159 12115099 ~ 12175948 (-)
LOC110502229 NA coding upstream 227598 12181538 ~ 12205662 (-)
LOC110503075 LOC105010677 coding upstream 265717 12219657 ~ 12254247 (-)
LOC110502227 LOC106604178 coding upstream 331690 12285630 ~ 12343122 (-)
G1830184 NA non-coding downstream 11032 11896012 ~ 11896795 (-)
G1830115 NA non-coding downstream 22547 11884994 ~ 11885280 (-)
G1830077 NA non-coding downstream 44721 11862849 ~ 11863106 (-)
G1830073 NA non-coding downstream 45877 11861733 ~ 11861950 (-)
G1830072 NA non-coding downstream 46260 11861336 ~ 11861567 (-)
G1830228 NA non-coding upstream 7370 11961310 ~ 11961552 (-)
G1830238 NA non-coding upstream 12415 11966355 ~ 11966607 (-)
G1830239 NA non-coding upstream 13140 11967080 ~ 11967282 (-)
G1830492 LOC106576872 non-coding upstream 59892 12013832 ~ 12015042 (-)
G1830525 NA non-coding upstream 104680 12058620 ~ 12059230 (-)
G1829918 NA other downstream 173901 11733430 ~ 11733926 (-)
G1829417 LOC106604325 other downstream 703831 11203067 ~ 11203996 (-)
G1827761 NA other downstream 2218983 9688457 ~ 9688844 (-)
G1827690 NA other downstream 2362854 9544383 ~ 9544973 (-)
LOC110502269 LOC106604550 other upstream 439023 12392924 ~ 12411810 (-)
LOC110502275 LOC106604599 other upstream 626876 12580816 ~ 12651383 (-)
G1833570 NA other upstream 2566409 14520349 ~ 14520929 (-)
G1834810 NA other upstream 3212269 15166209 ~ 15166919 (-)
G1834927 NA other upstream 3544814 15498754 ~ 15500261 (-)
G1830182 NA non-coding downstream 4720 11911469 ~ 11913359 (-)

Expression


Co-expression Network