LOC110502229


Basic Information

Item Value
gene id LOC110502229
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12181538 ~ 12205662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002470304.2
ctgacaaggtacaaatctgtccttctgccgctgaacaggcactgttcctaggccgtcattgaaaataataatttgttcttaactgacttgcctagttaaataaagatacaaaAATAAGAAAGACATAAAAGAAAGTACAGTTCTGAACTTGAATGAACCATATGCTGTGTATTAAATTTTACTTGGATGGACACACAACACTATTTTCTCAAGCAGTAAGTAGGTACCTGATTAAAAAACATTCCAAGCTGAGCTCCAACCACGTCTCATGTCATCTGTTGTGTATCTCAATCCCAAATGACTGGAAAAGAGCACTATttaaatgactgtgtgtgtgtggggcagtggaggctgctgaggagaggactgctcataataatgtctggaacggagcaaatggtaTGGCACTGAACACATGGaagccatgtgtttgatgtatttttgataccattccacctattccactccagccattaccatgagctcctcctccccaattaagatgccaaTTAAGTAGGGGGTTGGTAGGTGTGGAGTGTGTTGGGTAACATGGTGCTGGGTGGgtggataggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttaatagtATGGATAGGTAGAAAGGGAGCGTCAATTGACAGTGGGTTTCTGAGTAAATGCACTGTTTGCTATCATCTTGTGTAGGCTACGTGTCTGGCAAGTAGTTGTGTCCATGTGAGTCACAgaataaacatttatttattagTCTGATGTGTGTCTGAATGCTCCTACCTACATCATACTCTGCCCCTATGTTGAACATTTTGTACTCACTCATATCCAGTTGACATGCCACCACCTTGTGGCTACCAAGAGCATTGCAAGGAAAATGCAATAGTCACCATAGTCACAAACCTGAGTTTGGAGTGTTGCGTAGTCTTGTAATTTGGTGAGAGTCTTAAAGATTAAGGAAAGTAAACTGGTGTGCTCTCtttaaaaactaaaagcatttgtTTGTGAAGTTAATCCACCTATAATGTCTCCACTTGTTCCCTCTCATCTGTACAACCCAGTACTAATCTCAGTTTTGGCCCTAAAGTGCTCAGCTCTTAAAGTGGGGGTTGTGCACTCAATAAACTTTTTCAAAATATGGATTTCAAAATATGATCATTATCATGTTTCCAATCATAAAGGCCTGAGTATGTTTAATTTGTAGTGGGCAATATCTGCCCATGTTACTGTCTGCACTTTTTACTATGCTTAGTTCTTGTGGATTTCAAATCACATGACACAGTGTTTCGGGGGATCATTTTGGCCAAGGCGAGCAGTATTGCTTATCTTGATCACATAATGAGTAGTAATTtgggatgcaaggtgatttgtaatTTGCAGTCCGAATGCAATATAGTAAATCTCAAACATGCAAATTGTGTAATGTGGTTGCTGTCCACCAGGAAGAGCTGTGCAGCAGAATGGCCACTGTGCTGCCATCCTGCTAGAAGATAACGAATCATTAATTTTATGACAATGGTTAAGATGGATTTTCATTGTGTTCCATGGTGTTATTCGCCCCCTAGTGGAGCTTTCTGGTACTTAGACTGTAAGGAAAACAGAAAGAGACACGCAGAGAAGGAAACAGGAAGAGACGCCGAGAAGCAGCTAAAAACAACGCTACAGTCTTTTGTCACGCTTCaaaatatttgttttaGGGAAAGGGAAGTTTGGCGAGGTGCTGCTGGCCAAGGCGAAGGCCATCGAGGAGGGCGAGGAGGATACAGTGGTGCTGGTGAAGAGCCTGCAGAGACGAGCAGCTGCAGTTAGTCTTCAGCCGCCAGGCCAACATTTTCTCCAAGCTGAGCCATGGCAACGTGGTGCGACTGCTGGGGTTGTGTAGGGAGGCCAAGCCCCACTATATGATTCTGGAGTACTATGagctgGTCTGCAAGCAGGCAAGATTAAGCTGCCCATGCCCGATGGCTGCCCCTGAAGTCTACAAGCGCATGTGCCACTGCTGGGCACCCAGTCTCAAAGAGCGCCCCTCCTCCAGTGAGTTCGTCAATGCCCTGGGGGAGCTGTCCTCGGACAGTTAAGCTTGAGAGGAGGACAACTGACCCCACCCCACCTCCATCTCTGCCCCCCTCCCAAATGAACACAGAAATGCTGGATTTTTCTGAGTCACAGATTTCAGGGACGAGGTGCGTGGCAAGGAGTTATTATTTCTAAGGACGTGTGGATAAGAAGaagataatacttttttataCCCTTGCGTGTGTGTAGATGGTTTCATGTGAGGAGTGCCAGGAGTTTACCTTTGCCTTAATTGCAGCATGGAAGGCATGCCCGCTGACGCTGTCCCTCTTTGCTCATGTGGTTTCACTGTGCCCATGCCTGGCATGGGTCTCTCAGGGTGTGTCCTAGAGACGCTCTCCCTCTACTCTATGACCCTGCAGCACAGGAACCATAGGAACTACAGTGCCTCTCCTTGCCTACCAGGACCTCAATCTACCAACCCTTAAATCCCCCCAACTAATCCAGGAGGAGAATTTAAACTACTTTTGTCCAGCAGGGGGCACATTGTGTATGTGCTGCACTGGACTCACCACCTGAATGCTGTATGTGCAGTACCGTGAAAatgtatttgccccctttctaattttctctacttttgcatatatatttatttattaaatacaaatttgtatttttactactttttctccccaatttcgtgatatccaattggaaGTTAGTCTTCTCCCATCGATGCAACactgactcgggagaggtgaaggtcgagagccatgcgtcctccgaaacacgaccctgccaagcgacactgcttcttgacacactgctcgcttaacacggaagccagccgtaccaaaCATCGTCCAGCTGGCAACCGTGGTCAGCTTGCAGGTGCttggcctgccacaaggagttgctagagtgcaatgggacaaggaaatcccggcggaccaaaccctcccctaatgcagacaacactaggccaattgtgcgccacctcatgggtctcctattcacggccggctgtgacacagcctgggatcgaacccgggtctgtagtgattcctcaagtgccttagacagctgcgccactcgggaggccctacttttgcatatttttgatactgaatgttaacAGATTTTCAACCAAAACCAAATATTAGACAATGGGAATCTGAGTGAACAGATAACACAACAATGACATACAgtacttatttcatttatttcatacagaaagttatgcaacacacaatgcccctgtgtgaaaaaaagtaatttcccccttacactcaataactgattctgccacctttagctgcaatgactccaaacaAACTGTTCATGTAGTTGTTTATCAGTCTTTcacgtcgctgtggaggaatgTTGGCCCTCTCTCCCATGCAgaactcagcgacatttgtgggttttcaagcaggAACTGCTTGTTTCAattcctgccacaacatctcaattgcaattaggtctggactttgactaagccattccaaaatgtcaaatttgttgctttttagccattttcatgtagacttgattttgtattttggatcattgtcttccTGAATGTcccagctgcgcttcagcttcagctcacataCGTATGGCCTGTCATTCttctgtagaattctctgatacagagcataATTCATGGTTCTTTCTATTAAGActagtcgtccaggtcctgagggagcaaagcatccccaaatgtttgttttttatgaaGGCTATGTGCTTACACTTAGGCCTGTTTTTGAATCCGCTTCAGCTAATGGCCACAGTAACCATGATGTATACAAGCTGCTACCAATAAAGTTTCATGTGTTTTTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002470304.2 True 3879 mRNA 0.45 3 12181538 12205662

Neighbor

gene id symbol gene type direction distance location
LOC110502230 LOC106604182 coding downstream 5590 12115099 ~ 12175948 (-)
znf511 NA coding downstream 82794 12094868 ~ 12098744 (-)
LOC110502234 LOC106604225 coding downstream 227598 11907827 ~ 11953940 (-)
LOC118943913 drgx coding downstream 373688 11798161 ~ 11807866 (-)
LOC110502235 LOC106604231 coding downstream 415972 11734088 ~ 11765566 (-)
LOC110503075 LOC105010677 coding upstream 13995 12219657 ~ 12254247 (-)
LOC110502227 LOC106604178 coding upstream 79968 12285630 ~ 12343122 (-)
LOC110502269 LOC106604550 coding upstream 187262 12392924 ~ 12411810 (-)
LOC110502270 LOC106604566 coding upstream 208247 12413909 ~ 12443202 (-)
LOC110502271 LOC106604578 coding upstream 305713 12511375 ~ 12529518 (-)
G1830525 NA non-coding downstream 122308 12058620 ~ 12059230 (-)
G1830492 LOC106576872 non-coding downstream 166496 12013832 ~ 12015042 (-)
G1830239 NA non-coding downstream 214256 11967080 ~ 11967282 (-)
G1830238 NA non-coding downstream 214931 11966355 ~ 11966607 (-)
G1830228 NA non-coding downstream 219986 11961310 ~ 11961552 (-)
G1830635 NA non-coding upstream 6269 12211931 ~ 12212359 (-)
G1830636 NA non-coding upstream 6737 12212399 ~ 12212792 (-)
G1830653 NA non-coding upstream 30550 12236212 ~ 12241803 (-)
G1830676 ap3m1 non-coding upstream 64529 12270191 ~ 12270796 (-)
G1830702 NA non-coding upstream 97207 12302869 ~ 12303250 (-)
G1829918 NA other downstream 447612 11733430 ~ 11733926 (-)
G1829417 LOC106604325 other downstream 977542 11203067 ~ 11203996 (-)
G1827761 NA other downstream 2492694 9688457 ~ 9688844 (-)
LOC110502275 LOC106604599 other upstream 375154 12580816 ~ 12651383 (-)
G1833570 NA other upstream 2314687 14520349 ~ 14520929 (-)
G1834810 NA other upstream 2960547 15166209 ~ 15166919 (-)
G1834927 NA other upstream 3293092 15498754 ~ 15500261 (-)

Expression


Co-expression Network