LOC110502273 (LOC106604587)


Basic Information

Item Value
gene id LOC110502273
gene name LOC106604587
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 12560405 ~ 12576330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580180.2
CACTCACGGGGACATGTTTCAGTTTGTCGGCAGTAGCCTACTAAGTGGAGCGAATGGTAGGAATTCAAATTATGGGAGTGGCACATCCTGTGATATGGCTCAACCATAAATGGTAGAGTTGCATATAGTGTGACGACGTTATCGTGCATCCTTGAACAAATTTAGGAGATCCGCACTTATCAGCGTGGAAACTTCCAAAACTATTCGCTCAGCTTTGCCACGGTTCCTTCTAGCTACAAAGTAGCCTCCTCGAAGTGTGTTCATTTTAATAACAAATGTCATATCTGACAGGCTgtaacaatttttattttataagTCGGTTTCGGCCAGTTTGGAAGTAGGCTATGCCTCTACGAGTTGTCGTGCAAGGTCCTGGACCTTGGGGATTCCGTCTAGTTGGTGGGAAAGATTTTGAACAACCCTTGACTATCTCGCGGGTCACTCATGGCAGTAGGGCTGCACAGGCCAATCTGTGTATCGGGGATCAGATCCTGGCCGTAGATGGAGAGCCCACCGAGAACATGACTCACCTGCAGGCACAGAACAAGATCAAGGGCTGCTTAGAGGAAATGGTCCTTTCTATTGACAGATCCGAATCTAAAATGTGGTCACCGCTCTCTTCTGAGGAAGGAAAGACCAACTCTTACAAGATTAATCTTGCATCTGAGCCGCAGGAGGTGAAACGCATAGGTTCCGCCCACAACAGGAGCGCCCTGCCATTCGCTGGGTTCGGCCCCAAGGTGGTAACCAATCAGTACAACAACCCTGCCGGTCTGTACTCCTCAGAGAATATCAAGGACTTCAACGTGACTGTGGATGGCGTGAAAACCATCGGCACTGCTGCTAATGAGCCCAGCACCGTcccAGATCCGTCCGGAATTCTGCCACCAATAGTGGCAGACTCTGAGGTCTACAAAATGCTGCAGGAAAACCAAGAGGCTGATGAGCCTCCTCGACAGTCAGCTTCATTCAAAGTGCTGCAGGATATTCTGGAGTTAGATCCTGATAAGACCTCTGGTTTTAAGAGTGTGAAAGCGCCTGCCACAAAAATTGGTTCAACAGTGAGACATGCAGACAAGTTACCAATCTGTGACAAATGTGGATCAGGGATTGTGGGGGTGGTAGTCAAGTTACGGGACAAGTTCCGTCACCCCGAGTGCTACACCTGCTCAGATTGCGACCTCAACCTGAAACAGAAGGGACATTTTTTCGTGGAGGACCAGATCTACTGTGAGAAACACGCACGTGAGCGAGTGACTCCACCCGAAGGCTATGATGTGGTCACTGTCTTTCCCAAGTAGAGCTGCTCATTGAACACTGCCTCAAACTGCACATTACCTATTAGTGTCTCCAAGATGCcattcatttatttataaagccccaaAAAAAAGCTA
>XM_036960640.1
tgtagacctccacaagtctggttcatccttgggagcaatgtacaaatgcctgaagGTCACTCATGGCAGTAGGGCTGCACAGGCCAATCTGTGTATCGGGGATCAGATCCTGGCCGTAGATGGAGAGCCCACCGAGAACATGACTCACCTGCAGGCACAGAACAAGATCAAGGGCTGCTTAGAGGAAATGGTCCTTTCTATTGACAGATCCGAATCTAAAATGTGGTCACCGCTCTCTTCTGAGGAAGGAAAGACCAACTCTTACAAGATTAATCTTGCATCTGAGCCGCAGGAGGTGAAACGCATAGGTTCCGCCCACAACAGGAGCGCCCTGCCATTCGCTGGGTTCGGCCCCAAGGTGGTAACCAATCAGTACAACAACCCTGCCGGTCTGTACTCCTCAGAGAATATCAAGGACTTCAACGTGACTGTGGATGGCGTGAAAACCATCGGCACTGCTGCTAATGAGCCCAGCACCGTcccAGATCCGTCCGGAATTCTGCCACCAATAGTGGCAGACTCTGAGGTCTACAAAATGCTGCAGGAAAACCAAGAGGCTGATGAGCCTCCTCGACAGTCAGCTTCATTCAAAGTGCTGCAGGATATTCTGGAGTTAGATCCTGATAAGACCTCTGGTTTTAAGAGTGTGAAAGCGCCTGCCACAAAAATTGGTTCAACAGTGAGACATGCAGACAAGTTACCAATCTGTGACAAATGTGGATCAGGGATTGTGGGGGTGGTAGTCAAGTTACGGGACAAGTTCCGTCACCCCGAGTGCTACACCTGCTCAGATTGCGACCTCAACCTGAAACAGAAGGGACATTTTTTCGTGGAGGACCAGATCTACTGTGAGAAACACGCACGTGAGCGAGTGACTCCACCCGAAGGCTATGATGTGGTCACTGTCTTTCCCAAGTAGAGCTGCTCATTGAACACTGCCTCAAACTGCACATTACCTATTAGTGTCTCCAAGATGCcattcatttatttataaagccccaaAAAAAAGCTA

Function

NR:

description
PDZ and LIM domain protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580180.2 False 1394 mRNA 0.48 7 12560405 12575203
XM_036960640.1 True 1012 mRNA 0.50 7 12560405 12576330

Neighbor

gene id symbol gene type direction distance location
LOC110502271 LOC106604578 coding downstream 30887 12511375 ~ 12529518 (-)
LOC110502270 LOC106604566 coding downstream 117203 12413909 ~ 12443202 (-)
LOC110502269 LOC106604550 coding downstream 148595 12392924 ~ 12411810 (-)
LOC110502227 LOC106604178 coding downstream 217283 12285630 ~ 12343122 (-)
LOC110503075 LOC105010677 coding downstream 306158 12219657 ~ 12254247 (-)
LOC110502275 LOC106604599 coding upstream 8980 12580816 ~ 12651383 (-)
pik3ap1 LOC106604619 coding upstream 77546 12653876 ~ 12687538 (-)
LOC110502279 emx2 coding upstream 468026 13044356 ~ 13049486 (-)
LOC110502281 eif3a coding upstream 491505 13067835 ~ 13084070 (-)
sfxn4 sfxn4 coding upstream 522837 13099167 ~ 13116030 (-)
G1831096 NA non-coding downstream 6281 12553846 ~ 12554124 (-)
G1831095 NA non-coding downstream 6675 12553381 ~ 12553730 (-)
G1831093 NA non-coding downstream 7806 12552381 ~ 12552599 (-)
G1831092 NA non-coding downstream 9249 12550917 ~ 12551156 (-)
G1831088 NA non-coding downstream 14200 12545711 ~ 12546205 (-)
G1831142 NA non-coding upstream 117966 12694296 ~ 12694586 (-)
G1831155 NA non-coding upstream 125241 12701571 ~ 12706584 (-)
G1831284 NA non-coding upstream 145696 12722026 ~ 12722262 (-)
G1831302 NA non-coding upstream 178536 12754866 ~ 12755151 (-)
LOC110502234 LOC106604225 other downstream 606772 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 757274 11798161 ~ 11807866 (-)
G1829918 NA other downstream 826479 11733430 ~ 11733926 (-)
G1829417 LOC106604325 other downstream 1356409 11203067 ~ 11203996 (-)
G1833570 NA other upstream 1944019 14520349 ~ 14520929 (-)
G1834810 NA other upstream 2589879 15166209 ~ 15166919 (-)
G1834927 NA other upstream 2922424 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 3089873 15666203 ~ 15671223 (-)

Expression


Co-expression Network