sfxn4 (sfxn4)


Basic Information

Item Value
gene id sfxn4
gene name sfxn4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13099167 ~ 13116030 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580205.2
CCTGCCATGTGATCAACTCCGGAAGTAAATTGTACATAGAACTTGACCTAGACACGTACAATTCAAACGGAGTTATTTCTAAATTTCTTTACATAATGAAACAAAATATGTAACCTATACACCAATAATTCACTGTGACTTTGTGGGTAGTCGTTGCTTTTTCAAATGGATATTAACTTACTTTATTGGAAAAACGAGGGCAAGACATTCCTCAGTCGACTACGCCTCTGGTTTAATATTCTTGACCCAAGTTCCTTGCTCTGCTCTGATGCTGAAATAGAAAATGCCCACTCACTCATTGGAAGTGTGGAGACAATGGTGCAAGATGAAAAGGCTGGAGATGCAGCATGGGTACTTTCTCTTTCTTCTGTTCATGCTGGTACTGGTGCTATACTTCCAGCTGTTTTCCGTCCTCAAGcaTTTTTACCAATATCAGCCCCTTTGGTTGTTGCCAGCTTTTTGCCACACAGTGGAGTCAAACCGGCTCTATTCTGGCAGTTTTTGCTTCAGAGTTACAGCGCTGGATTCAATCATGCAAACAGAAACGCATCTTCTGACAAGGGCATTAAGACCTCTTTGAAGCAGGGTCTGTTGATTGTCGGATCAGTTGCATATGCAACATGTGCAGGGGCAATTCCTCAAATAGTCATACAGCGACTTAGCATGAGCAGCCCAGCTGTCCAGATGTTTTTTAGGTCCGTATTACCAATACCCCTCTCAGCCTCCCTGGCCTATTTCAATGTGGTCATTGTCAGAAGTGAGGAGTCTGAGAATGGAATCCAGGTGTTTGATTCCAATGGGAATTCTGTTGGAATCTCTCAGGCAGCTGGAGCAAAGGCTGTGAGGGAGACTGCTCTCTCCAGGGCTGCTCTGTTAGGCACTACAGCTGCTGTTCCTAATCTTCTTATTTTCCTCTTGCAAAAgGCAAGGTTTCTGCAAAGGAGCCCCCTGCTGGTGGCTCCTATACGTCACATTAGCACTGCGATCGTCCTGGGCCTGATGATCCCAGTGTCCTTCAGTCTCTATCCACAGCTTGGAACGATCAAAAAGGAAAAGCTGGAAAAAGAATTAGAGACTGCAGCGGTAAGTGGTGAACTATTCTACCACAGGGGCCTCTGAGGCACCAGCAAACAAGCTCTGCAGACTGCAGTGTGGGAGCAGGAGGACCAAATCCGTGTGACTTCACTGACTGGGCAGCATGAGAAGTAACCTTTACGGCCACGGGATGCAGTGTTGCTTCATACACTAGGATGATGAATTCAGTCATAATTAATTAAATTGATAAAGGACAGAGTCCATGTTTCGATTCAGTTGAATTTAATAGCTGCAACTTGTAAGTGGATGTAAATTAACAATGCACTGCAAATTCATTGTAATCATGAGTTTGTAACAATGCCCTTCCTCGTACAGCTGTTCACCTTTCAAGTTTAGTGATTTGGTTTACAAGTTTGATCTTACAAAAGcaaatcatattactccagtatTTTAGTTAAATTGACATGtacattttcattttttaaaaagtgtGGATTTTGTTGACAGCACAGATACTTAAATGTATTTTTAGAACAAATAGGATATTCCAGAAATTTCAAATAGATTAGTTGAATCTCCTAACACCTAGATGAGGACATGCGTAGTGCATGCAACGTTAGTGTCTCATTGAATCTATTCAGGCACAAAGACGAGCCTTTGAGAACAAGGGTAGAATTGCCCAAGAAGTGAAACAATAAATTACATTGTTTTCAAAATATCAATGTCATATTACAGTAACAAATAGGTATGCAACATCATTTGACATAATGGTCATATACAAAACCAAAGAAATTGCTCCAGTAACTAACAATAGCGGACAGCTTTCCAGGGAGGACACATATCCGTTATGCCTCCACCCTTGGCAATCGGTCTCCTGCTTATCAAACTGAGGACACAAGGTTAGAAAAATGCTATCTGTTCTCCCTCTCATCTGAGCAACACCCAAACATGAGAGATTCCTTATATTGCAGTACCCAAAGATATTAGTTCCATTTTGGCACTTTATTAATTAATAAGAATCGACAACACATTGTTAAGATAAATGATTTTAAAATAACAAACTGCATATATCTCATTTGCCATGCATCTCTTATTTTAATTCTGAAATCTAAGGGGATAAATCGTGGTTCTTGAGACCTCAAATTATTCTGTTAAGTCTTAAAATAAACTATTGGATTCCTGAACTATGTAATGCTAGGGCTACGTGATTTATTAGACCGTTTAAGACACAGCAGTGCTTATATTCCCAGCCATTCTGCACCTGGGGAACAAGACAACCATGTTCTCAATTGTTCATATAACAGTAAGACAAAGTAACTACAAGCAAACACGTACCTCGTCAGTGTTCAATGGATTAGCCCTATTTCACATATTGCCCATAGCACCAATATTTTAGGTATTTGTTATTGTATTATTGTCAAGACAATACTTTACAATAAAgaaaatgtttcttttttttttttttctgtcacAGATAAATGACAAGTAGACTTTTAGTATTGTTAAGTGTCAGGAATGCAATAGTGTGTGATACATAACACCTGAGTGTTTCCCATTCACCTTAACCATTAAAATGCAACTGTG

Function

symbol description
sfxn4 Predicted to enable transmembrane transporter activity. Acts upstream of or within cellular respiration and erythrocyte differentiation. Located in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 18. Orthologous to human SFXN4 (sideroflexin 4).

NR:

description
sideroflexin-4

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K23502 SFXN4; sideroflexin-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580205.2 True 2619 mRNA 0.40 14 13099167 13116030

Neighbor

gene id symbol gene type direction distance location
LOC110502281 eif3a coding downstream 15097 13067835 ~ 13084070 (-)
LOC110502279 emx2 coding downstream 49681 13044356 ~ 13049486 (-)
pik3ap1 LOC106604619 coding downstream 411629 12653876 ~ 12687538 (-)
LOC110502275 LOC106604599 coding downstream 447784 12580816 ~ 12651383 (-)
LOC110502273 LOC106604587 coding downstream 522837 12560405 ~ 12576330 (-)
LOC110502284 tm9s3 coding upstream 7392 13123422 ~ 13146350 (-)
LOC110502288 abhd12 coding upstream 32797 13148827 ~ 13167879 (-)
mocos LOC106604730 coding upstream 53116 13169146 ~ 13197193 (-)
fignl1 fignl1 coding upstream 235316 13351346 ~ 13361102 (-)
LOC110502296 nanp coding upstream 287517 13403547 ~ 13405114 (-)
G1832329 NA non-coding downstream 33025 13065910 ~ 13066142 (-)
G1831475 LOC101154678 non-coding downstream 120941 12978002 ~ 12978226 (-)
G1831444 NA non-coding downstream 140976 12957980 ~ 12958191 (-)
G1831388 NA non-coding downstream 191179 12907782 ~ 12907988 (-)
G1831340 NA non-coding downstream 278402 12820468 ~ 12820765 (-)
G1832348 LOC106604759 non-coding upstream 58161 13174191 ~ 13178346 (-)
G1832362 NA non-coding upstream 67186 13183216 ~ 13183839 (-)
G1832384 NA non-coding upstream 113991 13230021 ~ 13239763 (-)
G1832439 ikaros non-coding upstream 223532 13339562 ~ 13342191 (-)
G1832472 NA non-coding upstream 265358 13381388 ~ 13381633 (-)
LOC110502269 LOC106604550 other downstream 703520 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1145534 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1296036 11798161 ~ 11807866 (-)
G1829918 NA other downstream 1365241 11733430 ~ 11733926 (-)
G1833570 NA other upstream 1404319 14520349 ~ 14520929 (-)
G1834810 NA other upstream 2050179 15166209 ~ 15166919 (-)
G1834927 NA other upstream 2382724 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 2550173 15666203 ~ 15671223 (-)
G1835092 NA other upstream 2629608 15745638 ~ 15747735 (-)

Expression


Co-expression Network