fignl1 (fignl1)


Basic Information

Item Value
gene id fignl1
gene name fignl1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13351346 ~ 13361102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580217.2
cagtgcattcgtaacaacctaaccattacgAAACTTATATTCGAACAAATAAACTTCACGTAGCAATATCTTTcattgttgaccaaattcgacactcattTACCTCCATAAAACATTTCGTCACTTCGTGGGCGGAGTAAAACCTCTTGCTTCTCCTCTTCCTATGGACGGAAAGCATTGTTTTGTACCAGCTGGGCCTGTGAATGggatataaccacttttccatggtGCAAAAAAGTTATTCACTATTTTTCCAGCTACAACTGTTTGTTACGTATCTGTGGTTGGAGCACGCCAGGCATGAGTGGTGCACACCTAGGCGAGTGGCAGAGGAGGTCCTTTGACATTTCATCTGGCACCTGCGCACCTGAGCAGACGGCAGACTCCTATCGGGCGCACATCCTCGCCATTCAATATGCATGGGCGAGCTCCCAGCTCTCTCAGGCCGGCACGGCCAGCCTGCTCAGGACTTACTCTGAACGCTATGCCGCAGTGCTGGACTCGGACGACCCTCGCACGGGGCTTAACAACTATGCAGAGAGTGCACTGCACCTGGCCCGCAGTCAGAGGAACCACAGCGACAAATGGGAGTCGTCCCTGACAACTGTGAATGTGCTGGAGCTGCCTTGCGTGCAGAAGATGATTCAGGCTGGGACAGGGGGTGGAAAGTCCCTGGTGGCACCTGCAGATGTTAACATCACTGTTGGACAAGAGAGCAGAGGCAGCTCCCTGCCTGTTGTTTCCTCCACTGGACTCAGAGCTGCAGAGCCTCCATTCAAACCCCTGGGACCCACATCATGGCCCAAGGCTGCGGGCAACAGCACTTTCAGCAATTTACAGAGTATTACTGCAGAGAGACCAAGAGGCCCTGAGGGATTCCCCAGCCACCACAATTCCTCTGCTGGCCCCTCAGGAAGTGCTCAGTCTCTGTTTGGCCAGCACGCCTCAGCTCCACCACATCCAAACCCAGGCCCTGAAGCGAACCAATCTGTCTTCTTCAACTCTAACCCCTCCAAGAGGAAGACATTCTATAACTCCTGTGGAGAGAGTGGCAGAGGGGGGGCATCTAGAGGGCAAGACCCACGTGGTGGTGGCACTAACTTCAAAACTGCAAGGGAGCAGTTTATTGTTGATCAGCAGAAAAAGCACTCCAACCAGCCCCAGAGAGCTCAGCAGCCCCCTGGGATGGTGGTTGCCATGGGGAATGCCACGAAGAAGTCACTGGGGGCCAACAGGCCACGGGGGACATTTTCCAAATTTGTGTCCCCAATGCCAAGGCAAGAGGACAAGGAGGGTGGGGTCGGGAGCAACAATGCCCAGGAGACTCAGCCAGTAGACGAGCGTCTGAAAAACTTTGAGCCAAAGATCATCGAGTTGATCATGAGTGAAATTATGGACCACGGGCCGCCCGTAGCCTGGGATGACATTGCTggcctggagtttgccaaagcCACCATCAAGGAGATTGTTGTGTGGCCTATGCTCCGGCCTGACATCTTCACTGGCCTCCGTGGTCCACCCAAAGGCATCCTCCTATTTGGGCCCCCGGGGACAGGAAAAACTCTGATTGGGAAATGCATTGCTTGCCAGTCAGGCGCCACCTTCTTCAGCATCAGCGCCTCATCTCTCACCTCAAagtgggtgggggagggagagaaaatggTGAGAGCACTCTTCGCCATTGCCCGCTGCCACCAGCCAGCAGTCATCTTCATCGACGAGATAGACTCTCTGCTGTCCCAGCGTACGGACGGGGAGCACGAGTCATCCCGGCGGATAAAGACTGAGTTCCTGGTTCAGTTGGACGGGGCGGCCACCTCAGCCGACGACCGCATCCTGGTGGTGGGGGCCACCAACCGCCCTCAGGAGATAGACGAGGCGGCTCGGCGCCGCCTTTCCAAACGCCTCTACATCCCCCTTCCCGAGGCAGCCGCAAGACGGCAGATAGTCTCTAACCTCATGGCCTGCGAGAAAAGCcagatggaagaggaagagctGGAGAACGTGGTCACAGGGACGGAGGGCTTTTCCGGGGCCGATATGACAGGACTGTGCCGGGAGGCAGCGTTGGGCCCCATCCGGAGCATCCAGCTCAGTGACATTGCCACCATCACCCCCGACCAGGTGCGGCCCATCCTCCACTGTGACTTCCAGGAGGCCCTGAGGATCGTGAGGCCCAGCGTCTCAGCCAAAGACCTGGAGCTCTATGAGGAGTGGAACAATACCTTTGGTTGTGGTCGTTGATCAGGGAAGCAGTATGGACTCACATTACACATATTAGCCTATATTTGCCATTTACTGCTGTTGTGGATATATTTAGTTTATGTTGAGTAAATAAAATTGCATTTTAGATTTCCCACAACAGACTCCACCATAAATGAGACTATTTTAATAATCTGTCTCAATGTTAACTTGATTTTTCATTTACTAATCCATGGCACAATGTTCATTTCCAAAGATAGGCTATTTGTTTTACTACACTGTTGATTCACTAAATACGATGTTGGTGTAAGTAATATGTTCCTAATAAATTTTCTAAATGTTTTCTATTGCGTTGCACAGCAAACAGGTTTTCCTTTGTAACACAGAGAGGAAATGTGACAGTGTTTTTCTGAAGACGGATTACGGGAAATATTCCCTATTCActccattagctagctagctacctgtttATCCAAAGCAGATGAAATCAGGCCTACATCAGCTTTCAGTTTCTTGTCATCATCAATGTTTGTTAAATGAGGTCTAGTGTCTCCCTGTCACTTGCATATCTTCATCCCTTACAGTTTACATTCGACCGTGATCTGGCAAAGTTACTCCACCTCAAAAATTCCATTTGGCGAAAGCAGACCTGCCAGCACGCACAAATTTTGCGTACCAACTACGCAATTCTCTGTCCATGTATGCAGGTACGAGATCCGATTTAAAAGTACGCAGAAATGAATAGGgcctgatttatttatttttgtaattgtatttacattttaataaaaaaaaatacatcca

Function

symbol description
fignl1 Enables protein-macromolecule adaptor activity. Acts upstream of or within microtubule cytoskeleton organization. Predicted to be active in nucleus. Is expressed in head; nervous system; neural tube; tail bud; and vertical myoseptum. Orthologous to human FIGNL1 (fidgetin like 1).

NR:

description
fidgetin-like protein 1

GO: NA

KEGG:

id description
K22766 FIGNL1; fidgetin-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580217.2 True 3006 mRNA 0.51 2 13351346 13361102

Neighbor

gene id symbol gene type direction distance location
mocos LOC106604730 coding downstream 154153 13169146 ~ 13197193 (-)
LOC110502288 abhd12 coding downstream 183467 13148827 ~ 13167879 (-)
LOC110502284 tm9s3 coding downstream 204996 13123422 ~ 13146350 (-)
sfxn4 sfxn4 coding downstream 235316 13099167 ~ 13116030 (-)
LOC110502281 eif3a coding downstream 267276 13067835 ~ 13084070 (-)
LOC110502296 nanp coding upstream 42445 13403547 ~ 13405114 (-)
LOC110502298 LOC106604820 coding upstream 126992 13488094 ~ 13549306 (-)
LOC110502303 LOC106604861 coding upstream 313361 13674463 ~ 13710049 (-)
LOC118943841 NA coding upstream 341441 13702543 ~ 13703759 (-)
LOC110502305 marh5 coding upstream 398551 13759653 ~ 13824191 (-)
G1832439 ikaros non-coding downstream 9155 13339562 ~ 13342191 (-)
G1832384 NA non-coding downstream 111583 13230021 ~ 13239763 (-)
G1832362 NA non-coding downstream 167507 13183216 ~ 13183839 (-)
G1832348 LOC106604759 non-coding downstream 173000 13174191 ~ 13178346 (-)
G1832329 NA non-coding downstream 285204 13065910 ~ 13066142 (-)
G1832472 NA non-coding upstream 20286 13381388 ~ 13381633 (-)
G1832473 NA non-coding upstream 20616 13381718 ~ 13381920 (-)
G1832480 NA non-coding upstream 27909 13389011 ~ 13389298 (-)
G1832482 NA non-coding upstream 30538 13391640 ~ 13395954 (-)
G1832483 NA non-coding upstream 35700 13396802 ~ 13397308 (-)
LOC110502275 LOC106604599 other downstream 761646 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 955699 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1397713 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1548215 11798161 ~ 11807866 (-)
G1829918 NA other downstream 1617420 11733430 ~ 11733926 (-)
G1833570 NA other upstream 1159247 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1805107 15166209 ~ 15166919 (-)
G1834927 NA other upstream 2137652 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 2305101 15666203 ~ 15671223 (-)
G1835092 NA other upstream 2384536 15745638 ~ 15747735 (-)

Expression


Co-expression Network