LOC110502305 (marh5)


Basic Information

Item Value
gene id LOC110502305
gene name marh5
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 13759653 ~ 13824191 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580241.2
AACGTATGATTTCGCAGCCTCTGACGGGCTTGTTATTGTTGGTGACGAAGACCGCAACACCTCAGAGACAGGCAGTCAATGGAGTCAAGTTGTCACAGCGATGCATTAATGATAAACAAAGTATTACTTGTTTTTTAGCAAAATATTAACGTGAAACCGCAGGCGAAGCGTCGAGTAGTAATGCATTATTTAGAATGACCGCAAAGGAATTGGCTTATAGTTGAAGTTACTTTATTTCGGCTAACCAacaagctagccagccagctaaactATTCGAAGGCCTCGTCGCTTTCAACAAGGCCAAGCTAGCCAACTAACCTGCATCGTTAAACACTCAAAACGTTTTGAAGTGTTGTTTTACATTTATTGGCTATATGTCGGAAGATATCGCATTGGTAatgcaacagaatttggacaggAGCTGCTGGGTATGCTTCGCCACGGATGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGAGGCTCCACCAAGTGGGTGCACCAGGCATGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGGGGCAACAGCACGGCCCGCGTGTCCTGTCCGCAGTGCAACGCCGAGTACCTCATCGTCTTCCCCAAGCTGGggCCAGTGGTGTATGTACTAGACCTGTTTGACCGGCTCATCTCCAAGGCCTGTCCCTTTGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACCGCCGTCACGTACGGGGCTGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGATGTGATGGAGCGGGCAGACCCCTTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAAGACTACGTGCTGCGCCTCTGGAGGAAGTACTCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAGggatTGGGTGTCCGGTGCCTCGTATCCCGGCGGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACAAGGATCCTGTGTGGTGCCCTGGTATTCCCTACCATCGCCACCATCGTGGGCAAACTCATGTTCAGCAGTGTCAACTCCAACCTGCAGAGGACCATTCTGGGTGGGATTGCGTTTGTGGCTGTCAAGGGAGCGTTCAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTTACCGAGGCAGAGGAGGCCTGAGAAGGGgcatggacagacagacatattgaTACACAGGGGGAGTGGACGGAGCATGACGGTGAACTCTGAGCAGGAACATTGTCGGACAGACAGATTGACGGACTTAGGGATCATTGGCGCCCCCCAAACTCTTACACCTCTCTAAGTAGCCTCGCCTCACCTCGTTCTGTTTCTGCTCTTTAGGGAGTCATCGTCGTATGCGGCTGACATTCGTGCTGTATGATTATCACCATGTTCTATTTTGTTTTTAAAACATTCAAAGGAGAAGAGACGAGACAAGAACACTGATACAGACATGCGtgcgtgcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagtgctcATGTATATTCCACACAGGagctctttttttttgttgtggaaTGTGACTTGTAACTGCTATTTTGCTGTAGcaatatttgtttgttttaatcAAGTAACCAGTGCTGGTTGTACTTTAAAAAGATACATCTGGGGCACATGTAATTATTAGACAGGAAAGTTTTATAAATAATTGTCTTACTGTTAATTTTGCAGTTTTGAAATTTGCCAATGAGGAATATTGTTTCCCTGTATTGAATGCGTTTTAagagaaattagatttttttatcACTAAAGGATGATTATTTGAATGGGAAATAACTTTTTACCTGCTCCTGTTGCCACGTTTCCATTGGTAAATATCCAATATACATACTCTCAATTATTTAGAAGCACAGTACAAACATAAGTGTGATTGTCTGTACATACATTCATTGCACAATATGTATCAGCTAAAACATTCAAGggtatttttttgttgtcaaatGCCTAGAAGTGTTGTCATTAGTTCTGTTTGTAGTTGATTTTGTGTAATTGTCTTCTACTCatgagatgacagagaatgtgatgTGCAAGCCTGCAATGTGGAGGTGGGTGGATGATATAGACCTGACACGTGCCGCATTACCTTCTAAATGAGAGCATAAAATTACATGTCCACTGAATAAAGGTGAGATTTGTGTCTCTTCTTTTAACCCAAATCGCATATTCCGCCACATATTTCCTTGCTGACGCCACCACTTGCTTTGTTttttagtgtgtgtatatatatattatatatattatatatatgctCAAGGCAGTCACGTAATAACCCATTCTGTAACTACTCTTTCTTCTAAAAGTGCGGTATAAccagtatactgtacattacgTGTGTGAAAAAGGCCATAAACCAATCATTTGAATATTTAATATTATTGTGCACATCTCTTTTAGCTGTGCCTGGTAGACAGACATGCTCCAATAATCTGCTGTGGTCAACTCAGCTTTTACATTAACTCTAAAGAAAATATATTATGCCAAAAGTGACATTGAAGTTATTAATTGTATTGTACAGACATTGTTTCTCAATTTATAGTTTCGTGGTGGATTGtgaataaatgtattttttcaaA
>XM_021580240.2
GGCATCTTGTAAACGTATGATTTCGCAGCCTCTGACGGGCTTGTTATTGTTGGTGACGAAGACCGCAACACCTCAGAGACAGGCAGTCAATGGAGTCAAGTTGTCACAGCGATGCATTAATGATAAACAAAGTATTACTTGTTTTTTAGCAAAATATTAACGTGAAACCGCAGGCGAAGCGTCGAGTAGTAATGCATTATTTAGAATGACCGCAAAGGAATTGGCTTATAGTTGAAGTTACTTTATTTCGGCTAACCAacaagctagccagccagctaaactATTCGAAGGCCTCGTCGCTTTCAACAAGGCCAAGCTAGCCAACTAACCTGCATCGTTAAACACTCAAAACGTTTTGAAGTGTTGTTTTACATTTATTGGCTATATGTCGGAAGATATCGCATTGGTAatgcaacagaatttggacaggAGCTGCTGGGTATGCTTCGCCACGGATGAGGATGACCGCACGGCGGAGTGGGTGCGTCCGTGTCGCTGCCGAGGCTCCACCAAGTGGGTGCACCAGGCATGTCTGCAGCGCTGGGTGGACGAGAAGCAGAGGGGCAACAGCACGGCCCGCGTGTCCTGTCCGCAGTGCAACGCCGAGTACCTCATCGTCTTCCCCAAGCTGGggCCAGTGGTGTATGTACTAGACCTGTTTGACCGGCTCATCTCCAAGGCCTGTCCCTTTGCCGCCGCCGGCATCATGGTGGGCTCCATCTACTGGACCGCCGTCACGTACGGGGCTGTCACTGTCATGCAGGTGGTGGGCCATAAGGAGGGCCTGGATGTGATGGAGCGGGCAGACCCCTTGTTCCTGCTCATCGGCCTGCCCACCATCCCCGTCATGCTGATCCTGGGGAAGATGATCCGCTGGGAAGACTACGTGCTGCGCCTCTGGAGGAAGTACTCCAACAAGCTGCAGATCCTCAACAGCATCTTCCCAGGTCAGAACGGACACATTGggatTGGGTGTCCGGTGCCTCGTATCCCGGCGGAGGCCAGCCCCCTGGCAGACCACGTGTCAGCCACAAGGATCCTGTGTGGTGCCCTGGTATTCCCTACCATCGCCACCATCGTGGGCAAACTCATGTTCAGCAGTGTCAACTCCAACCTGCAGAGGACCATTCTGGGTGGGATTGCGTTTGTGGCTGTCAAGGGAGCGTTCAAGGTGTACTTCAAACAGCAGCAGTACCAGAGGCAAGCCCACCGCAAGATCCTCAACTTTACCGAGGCAGAGGAGGCCTGAGAAGGGgcatggacagacagacatattgaTACACAGGGGGAGTGGACGGAGCATGACGGTGAACTCTGAGCAGGAACATTGTCGGACAGACAGATTGACGGACTTAGGGATCATTGGCGCCCCCCAAACTCTTACACCTCTCTAAGTAGCCTCGCCTCACCTCGTTCTGTTTCTGCTCTTTAGGGAGTCATCGTCGTATGCGGCTGACATTCGTGCTGTATGATTATCACCATGTTCTATTTTGTTTTTAAAACATTCAAAGGAGAAGAGACGAGACAAGAACACTGATACAGACATGCGtgcgtgcaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagagagtgctcATGTATATTCCACACAGGagctctttttttttgttgtggaaTGTGACTTGTAACTGCTATTTTGCTGTAGcaatatttgtttgttttaatcAAGTAACCAGTGCTGGTTGTACTTTAAAAAGATACATCTGGGGCACATGTAATTATTAGACAGGAAAGTTTTATAAATAATTGTCTTACTGTTAATTTTGCAGTTTTGAAATTTGCCAATGAGGAATATTGTTTCCCTGTATTGAATGCGTTTTAagagaaattagatttttttatcACTAAAGGATGATTATTTGAATGGGAAATAACTTTTTACCTGCTCCTGTTGCCACGTTTCCATTGGTAAATATCCAATATACATACTCTCAATTATTTAGAAGCACAGTACAAACATAAGTGTGATTGTCTGTACATACATTCATTGCACAATATGTATCAGCTAAAACATTCAAGggtatttttttgttgtcaaatGCCTAGAAGTGTTGTCATTAGTTCTGTTTGTAGTTGATTTTGTGTAATTGTCTTCTACTCatgagatgacagagaatgtgatgTGCAAGCCTGCAATGTGGAGGTGGGTGGATGATATAGACCTGACACGTGCCGCATTACCTTCTAAATGAGAGCATAAAATTACATGTCCACTGAATAAAGGTGAGATTTGTGTCTCTTCTTTTAACCCAAATCGCATATTCCGCCACATATTTCCTTGCTGACGCCACCACTTGCTTTGTTttttagtgtgtgtatatatatattatatatattatatatatgctCAAGGCAGTCACGTAATAACCCATTCTGTAACTACTCTTTCTTCTAAAAGTGCGGTATAAccagtatactgtacattacgTGTGTGAAAAAGGCCATAAACCAATCATTTGAATATTTAATATTATTGTGCACATCTCTTTTAGCTGTGCCTGGTAGACAGACATGCTCCAATAATCTGCTGTGGTCAACTCAGCTTTTACATTAACTCTAAAGAAAATATATTATGCCAAAAGTGACATTGAAGTTATTAATTGTATTGTACAGACATTGTTTCTCAATTTATAGTTTCGTGGTGGATTGtgaataaatgtattttttcaaA

Function

NR:

description
E3 ubiquitin-protein ligase MARCH5-like isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580241.2 False 2710 mRNA 0.45 6 13759653 13824180
XM_021580240.2 True 2739 mRNA 0.45 6 13759653 13824191

Neighbor

gene id symbol gene type direction distance location
LOC110502303 LOC106604861 coding downstream 49604 13674463 ~ 13710049 (-)
LOC118943841 NA coding downstream 55894 13702543 ~ 13703759 (-)
LOC110502298 LOC106604820 coding downstream 210347 13488094 ~ 13549306 (-)
LOC110502296 nanp coding downstream 354539 13403547 ~ 13405114 (-)
fignl1 fignl1 coding downstream 398551 13351346 ~ 13361102 (-)
LOC110502306 LOC106604898 coding upstream 66807 13890998 ~ 13944830 (-)
LOC110502308 blnk coding upstream 143323 13967514 ~ 14061826 (-)
LOC110502312 kndc1 coding upstream 552045 14376236 ~ 14467063 (-)
LOC110502313 LOC106604940 coding upstream 672811 14497002 ~ 14757755 (-)
LOC118943949 NA coding upstream 705067 14529258 ~ 14529355 (-)
G1832558 NA non-coding downstream 73730 13672516 ~ 13685923 (-)
G1832590 NA non-coding downstream 199264 13560090 ~ 13560389 (-)
G1832483 NA non-coding downstream 362345 13396802 ~ 13397308 (-)
G1832482 NA non-coding downstream 363699 13391640 ~ 13395954 (-)
G1832480 NA non-coding downstream 370355 13389011 ~ 13389298 (-)
G1832769 NA non-coding upstream 51487 13875678 ~ 13877676 (-)
G1832798 NA non-coding upstream 130207 13954398 ~ 13954643 (-)
G1832918 NA non-coding upstream 299147 14123338 ~ 14126003 (-)
G1833001 NA non-coding upstream 424581 14248772 ~ 14249114 (-)
LOC110502275 LOC106604599 other downstream 1169953 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 1364006 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 1806020 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 1956522 11798161 ~ 11807866 (-)
G1829918 NA other downstream 2025727 11733430 ~ 11733926 (-)
G1833570 NA other upstream 696158 14520349 ~ 14520929 (-)
G1834810 NA other upstream 1342018 15166209 ~ 15166919 (-)
G1834927 NA other upstream 1674563 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 1842012 15666203 ~ 15671223 (-)
G1835092 NA other upstream 1921447 15745638 ~ 15747735 (-)

Expression


Co-expression Network