XLOC_037378 (pcbp3)


Basic Information

Item Value
gene id XLOC_037378
gene name pcbp3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42040557 ~ 42127228 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073546
CTCCTCCGAGTCTTCTGGAAGTGTGACGGCGCGTGGTCACATGACCTGGAAGAGAAAACCCAAGAGACTCCTGGGATCCCTCTCTGAATGGGCCAGTTATCAACCTGGAAAGAAGTCTAAAGGCTGATGAACTGATCCGCACGGCGACACAGCTGCGCTCTCTTCCCCTCTTCATCTGGCCAGTCTCTCTCCATTTATGTCCTGAGAGCCACAACTTTCTGCAACTCTGGTGACTGGTTGGCTGCTGTACCATCATTATCGTCCTGCTACTGGGGATTTT
>TCONS_00073547
TGTGATGCTATGGCCAAGGGATACACTTAACTACAGAATTCCTCCAGACCTTTGGGGGAACGTGTCTGAAGCAGAAAACTTCCTCTTTGAAATGAACCATTCTCACATCGACCTCAAGCATTTTGAGCATTCAATCTTTCTTTTTCCCAATATAAAAATGAACCCTCATTATCACTAAGAACATCCTGAGAAACTCTTTTGGAAGATCTGAGTGGAAAGAGATTTGTTTGAGTGCATAAAACAAGAAGCTTCTCTTCGAGCTGTGCTTGTATGGGCATTTGCACGTTCTCTTTATGCTCAGCGATTTATAGATTTTTGAGGGCTCTCAAAGCAAAGACACTGAGCCAGTTCAGCACGTGTCAGGCAGTCAGTAATGAGCTTCTTAATTAAACCCTGAGGCTTGTGGCTCAATTAGGGCTTACAGACAGAGTTAAACTGATCAATCCAGGAAATGCTTCTGCAGAGCATGGCAGCTCTGTCGGATGTATGGCAGAAGAGGGCTTTGAAGAACAAGAGACTGATTTAATGTTCAGTTCAAGTGTCATTTCTGTTTTTGGAGATCAGTTGCCCTTCACCCTTTCTCTCTTGAATCTTTGTATCCTTCATGCTCGTCATGGCCTATTAGCTTGCTCAATTGATGATTGTACGATGTTCCCAACCAACTCAACTGTGCCTCACACCCCACCCCGCCTTTTGACCTTGCTCTGGGCATTGGTCGAGCTTACTTATAGTACCAGGGATATTCATGTTGCTCTTATTGTGCCTAGTGTCTTCCATCTGTGGTCCTTGCTCAACCTTGAAAACTTCCCTCTAACTGGTGACTGGTTGGCTGCTGTACCATCATTATCGTCCTGCTACTGGGGATTTTCCTGTCACGTGAACATATTCCTGCTTCACCTCCACTCCCAGTATGGAACCCAGTAAAGTGCAGTCGGAGGGCGGCCTGAATGTGACCCTGACCATCCGGCTCCTCATGCACGGCAAGgaaGTGGGAAGCATCATTGGAAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGCGCTCGCATCAACATCTCAGAAGGAAACTGTCCCGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTCAAGGCTTTCGCTATGATTGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCCTACACAATTCAGGGACAATATGCCATTCCACACCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTCGGACAGACCACCCCTGCTTTCCCTGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCTCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCATCAATGACTACATCCTGA
>TCONS_00073548
TAATTTCAGTCCTTTCCGAACGTCGATACTGGTGGCCGTCGATTAGGAGCTCTGTGAagGTGACTGGTTGGCTGCTGTACCATCATTATCGTCCTGCTACTGGGGATTTTCCTGTCACGTGAACATATTCCTGCTTCACCTCCACTCCCAGTATGGAACCCAGTAAAGTGCAGTCGGAGGGCGGCCTGAATGTGACCCTGACCATCCGGCTCCTCATGCACGGCAAGgaaGTGGGAAGCATCATTGGAAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGCGCTCGCATCAACATCTCAGAAGGAAACTGTCCCGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTCAAGGCTTTCGCTATGATTGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCCTACACAATTCAGGGACAATATGCCATTCCACACCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTCGGACAGACCACCCCTGCTTTCCCTGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCTCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCATCAATGACTACATCCTGAAGCCCCAAACTGCTTTCATTACATGAAGCTCTGAGCAGCTGATTCCCAATATACACCCCTATGTACAATCTTCCTTTAGATCTCACCGAATACTTCCCTTAAACCCCACGGTCAACTTCATCAGTAGCTTCATTCATGTAGGCAgactactgaaataaaaaaataattaaaaaaagaaacgcaGGACAACTGTAGTATGATTTGTTCATGTTATGCAGTGTTTCAGTGTAGTATTTTAGCATGCTGAATGCTTGGATCTTGTTCTAGATTTCTTTATTCTTTAACGTTTTGCTAGATTAGCTGAGTACGGTTGCTGCGCAAGTCTTGACAGCAAATGTTTAATGGTTTGAATTGCATCCAATAGCATTTTTTAGCAATGCTGTTGGCAAGGAGCCAGTGATGTGATGCAGACGTACAAATGCATGTCCGAGTCGAGGAGATGTTGGAAACTGTGTTTCTTTAGTGgcagaacatttttatttgaatatttaacaGTGGCTTGATTGTTTTCAGCTCGACCGAATCGTAAGAAATGCAtgactgttatttttatttgtttgttattatttatttctcaacaTGGAGAGCAACAAAGTGGAAAAAAAAGCTCTTATTTTTATACAGAAGTGTCATATGCTTTCGgaattattttatgttatctATTTTTTTCTATCTTTTCCTTCCCCTTCCCTTTTTTCCTCTTCCCTTGAACTATTCTAGGCTGACGTCTGAGGTCACTGGAATGGGCACTCTCTAATTTCTACCCATGATCCTTCACTGCATCACATGACCCTTGAGCCAATGGCATTGCACCTAGTTTGTTTTCTCTCTGTACTTTTGCTGTCCTGTATTTTCAGTACTTCTGACTCATTTATATTCTATAACGTGCACATATTTAAGCTGAGTTTAATGTTCCTCCTGCTCAACCTTTGTTGTGCTCCTGATGCTCCTTATTATTACCTGTTTATTTCgtaagacactttttttttttgactctctAGTACCTCACGTCACCATTGTCCCGTTTGACCATTGTGATTTCATGTTTCAGCGCCGTTTTCTGTGGTGTGGTACAGCTAAGCCAATGAAATCCTTCACTTGTCAATCTGTCGTTAGCTACGGCTggatttgtcatttttaaagcaGCGGTCTTTAAAAATGCACTGTGCTCCTGGGCTTATAACAGTGCTATTCATACATGAATAATGAAACAAACTGATGGAGTTGGAATGTTTGCACCACGCCTGTACGCTTTGTTTGCATCCGTCTTTGTGGCATGCAGAGTTACACCGAGAATCCATTATTAGCCTCTGTATTCGCTTTCAAAACAGAGAGGAGAAATGCTTGTAAACAAAGGATAAGCCATGCCGGCTGATTTATTGCATGCTGAGACCTTTCAATTCGGCCCGCAATCTAAGTTGAAGTAATTGAATATATCACAGCAGAAtcatttctgaaatatttttgtACGCAACAAACATAGGACAAATACAGCTTTATTCATCCCTTTGGAAGTAAATACAGATCTGCTGATAATGAAATCCTTCCCATGCTTCCCGTACAGCATCTGTGAGTATGGTAAAGGATCACATAGGGTCCAAAATTATCATTTTCACAATTGTGGATGAATTGAAAACATTTTATGTAAGTATTATGCATTATTTTTGCAATTTGCACCAGGGGCTTCATTTATAAAATGCACATATGATCAGATTTGTTACTAAATTCTGTGGATTCACGTCAAATGTCAGGAACAAATCAGGAATTGTAAATGTCAACTGATGATTCAACAATGCTTATTCAAATGCAAAGTTATTTTGataataaaacaatgttaaaatgGGGTggctcatagcaagaaggtcattggttcaagtcctggcgggaccagttggcatt
>TCONS_00073549
AGTCCTTTCCGAACGTCGATACTGGTGGCCGTCGATTAGGAGCTCTGTGAagGTGACTGGTTGGCTGCTGTACCATCATTATCGTCCTGCTACTGGGGATTTTCCTGTCACGTGAACATATTCCTGCTTCACCTCCACTCCCAGTATGGAACCCAGTAAAGTGCAGTCGGAGGGCGGCCTGAATGTGACCCTGACCATCCGGCTCCTCATGCACGGCAAGgaaGTGGGAAGCATCATTGGAAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGCGCTCGCATCAACATCTCAGAAGGAAACTGTCCCGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTCAAGGCTTTCGCTATGATTGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGTTAGTTCACTCAGGTTTTCTCACCTTCTCACTCGCATGCTTTCACACCATCCTAACCAGAGGAACGCCTGAAAGAGGAGGAGCTTACATTGACAATGAGAATCCAGTCAGGACGAGTCTCTTTCTGACAGTACTGACTTTTACTGCCATCCAAAAATAAACTTGAAGATAATGCACA
>TCONS_00073550
ATGGAACCCAGTAAAGTGCAGTCGGAGGGCGGCCTGAATGTGACCCTGACCATCCGGCTCCTCATGCACGGCAAGgaaGTGGGAAGCATCATTGGAAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGCGCTCGCATCAACATCTCAGAAGGAAACTGTCCCGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTCAAGGCTTTCGCTATGATTGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCCTACACAATTCAGGGACAATATGCCATTCCACACCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTCGGACAGACCACCCCTGCTTTCCCTGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCTCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCATCAATGACTACATCCTGA
>TCONS_00073551
ATGGAACCCAGTAAAGTGCAGTCGGAGGGCGGCCTGAATGTGACCCTGACCATCCGGCTCCTCATGCACGGCAAGgaaGTGGGAAGCATCATTGGAAAGAAAGGAGAAACTGTGAAGAAGATGCGTGAAGAGAGCGGCGCTCGCATCAACATCTCAGAAGGAAACTGTCCCGAGAGGATCGTCACCATCACTGGACCCACAGATGCCATCTTCAAGGCTTTCGCTATGATTGCGTACAAGTTTGAAGAGGATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCCTACACAATTCAGGGACAATATGCCATTCCACACCCAGATCAGTTGACCAAGCTCCACCAGTTGGCTATGCAGCAAACCCCCTTTACCCCCCTCGGACAGACCACCCCTGCTTTCCCTGGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCTCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGCTGACGTCTGAGGTCACTGGAATGGGCACTCTCTAA
>TCONS_00073552
GATATAATCAACTCCATGAGCAACAGTCCAGCCACCAGTAAACCTCCGGTCACTCTGCGTCTCGTGGTGCCCGCCAGTCAGTGTGGCTCCCTCATCGGCAAAGGAGGATCCAAAATCAAAGAGATGAGAGAGTCCACAGGAGCTCAGGTGCAGGTAGCAGGAGACATGCTGCCCAACTCCACAGAGCGCGCAGTGACAATCTCCGGCACCCCGGAAGCCATCATCCAGTGTGTCAAACAGATATGTGTGGTCATGCTGGAGTCCCCACCGAAAGGTGCCACCATTCCCTACCGCCCAAAGCCCGCCTCCACCCCCGTCATTTTTTCAGGTGGCCAGGTAAGAGCCGACCCGCTGGCGGCGTCCGCAGCAAACCTCAGCCTTTTACTGCAGCACCAGCCACTGCCTGCCTACACAATTCAGGGACAATATGCCATTCCACACCCAGATGTCTGGATGCCAGTCCCCCGGCCAGTACTCATGAACTCACCATTCCCAATGATCTAATAGGCTGCATAATCGGGCGCCAGGGAACCAAAATCAACGAGATCCGTCAGATGTCTGGAGCTCAGATCAAAATAGCTAATGCCATGGAAGGGTCATCAGAGCGCCAGATCACCATTACAGGAACCCCCGCCAACATCAGCCTTGCCCAGTACCTCATCAACGCAAGGTTCAGAGACGTGGCAGCCATGTGGAATGACCCCTCATCAATGACTACATCCTGAAGCCCCAAACTGCTTTCATTACATGAAGCTCTGAGCAGCTGATTCCCAATATACA

Function

symbol description
pcbp3 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).

GO:

id name namespace
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-157 Predicted to enable mRNA binding activity. Predicted to be involved in regulation of RNA metabolic process and regulation of gene expression. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including brain; otic vesicle; pleuroperitoneal region; retina; and tail bud. Orthologous to human PCBP3 (poly(rC) binding protein 3).

Ensembl:

ensembl_id ENSDARG00000054378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073546 False 280 processed_transcript 0.53 3 42040557 42095177
TCONS_00073547 False 1963 mRNA 0.50 13 42063906 42125329
TCONS_00073548 False 3104 mRNA 0.44 13 42066030 42127228
TCONS_00073549 False 977 mRNA 0.53 8 42066037 42110002
TCONS_00073550 False 1053 mRNA 0.55 12 42095220 42125329
TCONS_00073551 False 1035 mRNA 0.55 12 42095220 42126086
TCONS_00073552 True 780 nonsense_mediated_decay 0.54 7 42099737 42125384

Neighbor

gene id symbol gene type direction distance location
XLOC_037377 BX247868.1 coding upstream 2238 41990086 ~ 42038319 (+)
XLOC_037376 col18a1a coding upstream 61052 41821613 ~ 41979505 (+)
XLOC_037375 BX927363.1 coding upstream 234202 41788217 ~ 41806355 (+)
XLOC_037373 ctdsp1 coding upstream 299137 41690153 ~ 41741420 (+)
XLOC_037374 dre-mir-26a-1 coding upstream 306947 41733533 ~ 41733610 (+)
XLOC_037380 lrrc3 coding downstream 30350 42157578 ~ 42164744 (+)
XLOC_037381 NA coding downstream 31148 42158376 ~ 42158616 (+)
XLOC_037382 si:dkey-10c21.1 coding downstream 141831 42269059 ~ 42270960 (+)
XLOC_037383 NA coding downstream 221730 42348958 ~ 42500284 (+)
XLOC_037384 gulp1a coding downstream 419276 42546504 ~ 42650623 (+)
XLOC_037372 dre-mir-732 non-coding upstream 357547 41682926 ~ 41683010 (+)
XLOC_037369 BX571827.3 non-coding upstream 441730 41509948 ~ 41598827 (+)
XLOC_037385 NA non-coding downstream 604971 42732199 ~ 42905622 (+)
XLOC_037386 CU855879.1 non-coding downstream 1204167 43331395 ~ 43331511 (+)
XLOC_037387 BX470133.1 non-coding downstream 1648023 43775251 ~ 43775365 (+)

Expression


Co-expression Network