LOC110503081 (LOC106604947)


Basic Information

Item Value
gene id LOC110503081
gene name LOC106604947
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 14812440 ~ 14908222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960549.1
TGAGGACTACAAGTGATTTTTGGTGACGTTAATCTCATGGAGCAGCTGTAGGGTTGGAGGACTGTTGCTCATCATTGCGCATGAAGCGGCAGTGGCGCGGCTCCTCTCCTAGTTGACGGGAATTCGCTGACACCAATTATTTTCGCGGGCAGATGCACGCACATCACCATATGCCGCCTATAGAAAACTGGACTGAAGTGCGCTACCAGTTACAACGTTGATTTGAATGCTAAGGACAATTCGGTGACACGGACTTTTATCGCCAGTATAAACTGAACTGTATGGCATGTTCTCCGCCACCAATCGCTACAGATAGACTTCACCAGACGCCTCCACACCTCCAGCAATGATGGCTGTTCTCCGCTCTGGAGGAAGTGTGTTCATCATGCTCCTCATTAGCAGGATGTTAGAGAACTCACTGCTCAGTGCTGAAGTAAAGGAGGGAGAGATTCTGCCTCCCACCATTCAGAAGCTGATGAAAGGATACAACAAGTACCTCAGGCCTTTCTTTGACAATGGGCCAGTGACTGTGGGCATGAGTTTGGACGTTGCCAGTATTGACACCATATCAGAGATCAACATGGACTACACGGCCACCATCTTCCTGCGTCAGCGCTGGACAGACGAGCGCCTGGTGTTTGAGGGGAACAAAAGCCTGAGTCTGGACGGCAGGCTTGTGGAGCTGCTCTGGGTACCAGACACATTCATCGTAGACTCCAAGAAGTCCTTCCTCCATGACATCACTGTGGAGAACAGGCTGATAAGGATCTTCCCCAATGGAACAGTGCTCTACGCCCTGAGGATCACCACCACTGTGGCCTGCAACATGGATCTGACCAAATATCCCATGGACAAGCAAACCTGCACTCTGCAACTGGAGAGCTGGGGCTACAACACCAACGATGTGATGTTCTACTGGACCAGAGGGAACGAGTCGGTCAGTGGTTTGGACACGCTGCGTCTGGCCCAGTACACAGTAGAGGACCACTACACCTCTGCGTCTGAGGCCATCTATGAAACAGgccACTACCCCAAGCTGATCTTCCACTTTGAGCTGAAGAGAAGCATCCTGTACTTCATCCTGGAGACATATGTTCCCTCTAGCCTGCTAGTGGTCCTGTCCTGGGTGTCTTTCTGGATCAGCCAGTCTTCCGTCCCCGCGAGGGTCTGCATCGGAGTGACCACGGTTCTGACCATGACCACGTTGATGATGGGTGCCAGGACGTCCCTGCCCAACGCCAACTGTTTCATCAAGGCCATCGATGTGTACCTGGGCATCTGCTTCAGCTTCATCTTCGGAGCCCTGATCGAGTACGCCGTGGCCCACTTCTGCACCCTCAACCACCCCGACGCCAACATTGTCATGtACGGTCACCAGATGGGAGGCTTTGACGAGGAGATGAACGGCATGGTCACTACCATCGCTGCTGAAAACAATAGGGCCAAGAGGCGTAAGGAGAAAGCTGCTGCAGTCTCAGCGCCCATGGCAGAGCTGGAACTGGGCCCCTCCAGCCCCACTGGCAGTGAGCCCAAGCCCGAGTCTCCTGAGGAGCCCCCCAATCGCTGCCTCACTGTCCTGGTCCTCCTCCGCAAGTTCCTGCGCAAAGCTGCAAACTGTTGCCATGTGGAGAATCCCCACTTAATAGACAACTACTCCAGGatgaccttccccctctcctttgtATTCATCAACCTCCTCTACTGGACATACTACCTGTACTTGTAACACACAGGAGTGTGTGTTTcggtatgtgcatgtgtgtgtgtgggtgtctgaatctgtgtgtttctgtttgtaaGTGGGATTcgttcatactgtatgtgttttttcTCAAACAATACACATGTTTACATTTACGGTCATGAGTGAAGCATAGTGTACAGTAGACCACCAACTACAGTACAACATCCTGAGGAGAATTACATGTCCATGCCTCGTTTATTATACCTGATTCAGCTCATTACTGCTCTCATAATTGATGAATTTCCAGTAAGTTCTGTCCATGATGGCCTGCTGACAGATGACCTATGGCTGGTGTGGAGCAGAGGAGTGAGTGGCTGGATGCGCTGTGTAATATTTATGAATGAGCTGCGAAGGGAAGCATCCAGAGTACCTCTGGGTTAGGCTGGGTCCACACTTAAGCTCCGAATGgcaatatatacaatatatatattgagagagggaatgagagagacagagagagagagagagagggaacactaaaataacaca

Function

NR:

description
PREDICTED: gamma-aminobutyric acid receptor subunit pi-like isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005230 extracellular ligand-gated ion channel activity molecular_function

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960549.1 True 2233 mRNA 0.51 10 14812440 14908222

Neighbor

gene id symbol gene type direction distance location
LOC110502313 LOC106604940 coding downstream 54685 14497002 ~ 14757755 (-)
LOC118943949 NA coding downstream 283085 14529258 ~ 14529355 (-)
LOC110502312 kndc1 coding downstream 345377 14376236 ~ 14467063 (-)
LOC110502308 blnk coding downstream 832670 13967514 ~ 14061826 (-)
LOC110502306 LOC106604898 coding downstream 867610 13890998 ~ 13944830 (-)
LOC110502316 LOC106604996 coding upstream 259016 15167238 ~ 15189583 (-)
LOC110502317 LOC106605012 coding upstream 329410 15237632 ~ 15429967 (-)
LOC110502321 NA coding upstream 586652 15494874 ~ 15498318 (-)
pwwp2b pwwp2b coding upstream 610598 15518820 ~ 15526522 (-)
LOC118943902 NA coding upstream 626608 15534830 ~ 15536064 (-)
G1833847 NA non-coding downstream 5636 14804982 ~ 14806804 (-)
G1833755 NA non-coding downstream 23962 14788260 ~ 14788478 (-)
G1833746 NA non-coding downstream 37756 14774440 ~ 14774684 (-)
G1833716 NA non-coding downstream 65269 14746808 ~ 14747171 (-)
G1833710 NA non-coding downstream 75933 14736274 ~ 14736507 (-)
G1833920 NA non-coding upstream 4843 14913065 ~ 14913288 (-)
G1833922 NA non-coding upstream 5189 14913411 ~ 14913621 (-)
G1833930 NA non-coding upstream 11052 14919274 ~ 14919491 (-)
G1833931 NA non-coding upstream 11364 14919586 ~ 14919875 (-)
G1833939 NA non-coding upstream 14633 14922855 ~ 14923071 (-)
G1833570 NA other downstream 291511 14520349 ~ 14520929 (-)
LOC110502275 LOC106604599 other downstream 2222740 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 2416793 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 2858807 11907827 ~ 11953940 (-)
LOC118943913 drgx other downstream 3009309 11798161 ~ 11807866 (-)
G1834810 NA other upstream 257987 15166209 ~ 15166919 (-)
G1834927 NA other upstream 590532 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 757981 15666203 ~ 15671223 (-)
G1835092 NA other upstream 837416 15745638 ~ 15747735 (-)
LOC110502353 LOC106605805 other upstream 2515253 17420323 ~ 17425430 (-)

Expression


Co-expression Network