LOC110502316 (LOC106604996)


Basic Information

Item Value
gene id LOC110502316
gene name LOC106604996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15167238 ~ 15189583 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580254.2
GGAGGTAATATAAATGTAGGCATATTTTCCTTCTGCAGGGCTAGTTTCTACTAAACAGGCTAGTGGACCTGTACATCAACAACAGCAATACTGGACAGTCTACATAATACCAACACCAGAGCATGAGCGATTTACATATACAAAGGAAATAGCCTATCACCTCAAATGACAAATGCTAACAAACGGCTAAAGCTACTAGGCATGCTAACATACACTACTAATGCATTCTTTGTGTAAATGCTAGCGGCAACGCGAGCTAGCCAAacatatatggaaaaatacaacaACAGACAATACTTAGCAACAAAACCAACGGGACATAAAAAATCTTAAAACACTTATGTTTTAGACGCACGCACAGTAAAATGTCAGACACCAAGGATATTGTACACAAGAGGAAAAGTGTAGTTCGTCAGGATGGAAAGCAATGTTATCTGATTTCTGCGCTGACAGGGCAGGGGTCCTACAAGAATGAACCTGAAGTCTCAGGAATATAGGCTGCTGATTGGCTAATATAAGAACGTCTGGCGTGACCTTGGCCAATAAGGACACTAAATGTGGTTTATGGTCTAAAGACTAGGAGACTAAAACACCGTTTCCACTGGGATTTAAAATTAGGGGGCAAATTTCAGCTAGTCAACCTAGTCCAGCCTAGGTTGACTTCAAAGTCAAGGGATTGTGGCTCTGTGGTCCCTGGCAGTTCTGTCCTTCGAGCGTTTCTTTGTGATCTGCCGGCCTCTGGGGAATGTTCGTCTTAGGGGGAAGCATGCGGCAATGGGCCTGCTGTTTGTCTGGACCTTCTCCTTCATCTGGACGATCCCTCCTGTGTTCGGCTGGTGCAGCTACACAGTCAGCAAGATCGGCACCACCTGCGAGCCAAACTGGTACTCCAACAACATTTCAAATCACACCTACATAATCACCTTCTTTGTGACCTGCTTCATAATGCCCCTGGGGGTGATCATTTACTGCTATGGGAAGCTCCTACAGAAGCTGAGAAAGGTGTCCCATGGCAGGCTGGGTAACGCCAAGAAACCGGAGCGTCAGGTGACAcgcatggtggtggtgatgattgtGGCTTTCATGGTGGGCTGGACGCCCTACGCCGCCTTCTCCATCATTGTCACAGCCTGTCCCACCATCTACCTGGACCCCAGACTTGCTGCTGCACCCGCTTTCTTCTCCAAGACGGCCGCAGTCTACAACCCAGTCATCTACGTCTTCATGAACAAACAGTTCAGGAAGTGCCTGATTCAGCTCTTTACCGGCAAGCCTGCGCCAGAGAACATGAATGCAACGTCGGAGCGACTAGGAATGACGGGGGAGAGCTGCACGGGGGGCGAGATGTCAGCCATAGCAGCACGCATCACAGTCTGCGGCAACACCCAGCCTAAGAATGAGGAGGCATCCCCCAGCAAGTGCAGCTCCTTCGTCCAGCTGCCAATCCCAGAGAACAAAGTCTGCCCCATGTAGACCAACAGAAGACTATCCCACCCCTGAACTCTCCTCCAGTCCTCACTGCCTTTTCATCCTCCCCTTCCATTGCTATGCAGATGCATCTTCTCTTACCCACCAACTTCTTGTGGTATGTGTTAGTTTAAAGATGCCAGGTGTAACCACAAGGGTTCCCTGGTTGACTTGTTATGTATTAGTAGACATGGAGGGAAACCGTAGCCCAAAAGAGGGACATAATGCTTTCATGTATGTCAAGCAGCCAGATCACCCTGACTGCATCTATCTGCTGAAAGTCATCTGAGGCTAAGTAGGGTCAGGCCTGGTTGATCTCTAGGGTAGGAGACCAGATGCTTTTGGAAATTGTGTTAGAGTGCCAGTAGGGGGCATTCTTCCCTCCTCAATACCTTAGTCCATGTTTTCTGTGGACACTGCTCCACAAAGGATTCCCTTATCCCTCATACCACCAATATATTTCACAGACATGGATTACCAACTGGGGTAATTTTGACCCCAAGAAGAAACTATTGGAAAAAGCAACAATCATAGCAAAATATCTAATTAATTATTATCAAAACATCATTAgatatgtaaataaaataaatacttttCACAAAATTACAGGTCATTTGCATATTCTAGAAAACAAGAATATACATGTCACTTAAATAATGTGCAGCTCTTTTCCAAAATACAATCCACAAGTACTATTAAGCCAATTTACCATCATTTGATTGTGTTATCATTTCGTTTTTAGAATGTTGATGTAAATATACATTTAGTCTTATTTGGTAAAAATGACTGGCATTTTAAAGGGGCAGTACACCAACATTTGAAATATacttaattttaaaaagtgattaATCCATTGAACCTGTGAGACAATGACCAACAATATGGCTtcgttttctttattttcttacCCCAAAGCCAGCATGAGCATAGTTGCTAATTGAAACAATGGCAGTGGTAGGGCCTATGGCTGTAGGCTTCAGAAAGCATGCTCAAATCTTCAGTCACTTCAAACCAAATGTTATAGCAACCCAAATACCATAACAAGTTGCACATCTAGAATATTGGAGGATTTTATAGGaattaatgtatttatataacaCTTCCCGTAGAATTACTATTTTTCGAAGAATACACAGCAATACAACACTATATGTACATTTAGAGGGTAGCTGGTTTCTGTATTACAGTTCTACCAAGTATTCATACTGACATACTTTTAATGAGCTGTTTTGACTGCAACtaagcatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgggagaggcctgtaatgttc
>XM_021580253.2
AATTCAGTTGCTGGTAAGCCTTCTCAAGGCTCAGATTCGGTCCGTACATATTAATTAAGAAAGTGTTTGTTTATTTGCAGCAGTGCTTTTGCGGTTTTGTTTACCGTTGCTGTTTTTTTTAAGATACAGACTCACTCTTTAAACAGCCTTGAATTCTGAATAACTGTGGATTCGTCGCTTTGGTCTAAAATATGTGCTTTCATGCAAAATGCGGATATCAAGATCTTAAGTACAGCCTACTCAAAGAAAAGTATGCAAAAAAATGAAGGAATGGCTGTTGATCCAGTAATTATTTCAAACGAATGCTCTTTACGCGCGACTCTGGGCATGCTGCAGTTTCGAGGAGGAGAGTACAAATTAAGTTGTGAAAATGTGTAATGGACCACAAGATCGCTGACCCTTTACATAACCCACGAGTGCAATAGGAATTTTACTCTATAGTCAAGTGCAATTATTTTGACATGGACAATGGATAATATAAGAATTGCAGTAAATGGTGTTTCTTTTAACGAGACAGGCGAGATCTACAAACCACACGCTGATCCGTTCACTGGTCCAATAACACATCTTGCACCTTGGAATTTCGCAGTTTTGGCTACGTTAATGTTTGTTGtgacgtctctgtctctctttgaaaATTTTACTGTTATGTTGGCCACTTACAAGTTCAAACAGCTGAGACAGCCCTTAAATTATATCATTGTTAATTTATCTGTCGCTGATTTCCTTGTGTCACTCACCGGTGGAACAATAAGTTTTCTAACAAATGCCAAAGGGTATTTTTTTCTTGGAAATTGGGCTTGCATATTGGAAGGTTTTGCTGTCACCTATTTCGGGATTGTGGCTCTGTGGTCCCTGGCAGTTCTGTCCTTCGAGCGTTTCTTTGTGATCTGCCGGCCTCTGGGGAATGTTCGTCTTAGGGGGAAGCATGCGGCAATGGGCCTGCTGTTTGTCTGGACCTTCTCCTTCATCTGGACGATCCCTCCTGTGTTCGGCTGGTGCAGCTACACAGTCAGCAAGATCGGCACCACCTGCGAGCCAAACTGGTACTCCAACAACATTTCAAATCACACCTACATAATCACCTTCTTTGTGACCTGCTTCATAATGCCCCTGGGGGTGATCATTTACTGCTATGGGAAGCTCCTACAGAAGCTGAGAAAGGTGTCCCATGGCAGGCTGGGTAACGCCAAGAAACCGGAGCGTCAGGTGACAcgcatggtggtggtgatgattgtGGCTTTCATGGTGGGCTGGACGCCCTACGCCGCCTTCTCCATCATTGTCACAGCCTGTCCCACCATCTACCTGGACCCCAGACTTGCTGCTGCACCCGCTTTCTTCTCCAAGACGGCCGCAGTCTACAACCCAGTCATCTACGTCTTCATGAACAAACAGTTCAGGAAGTGCCTGATTCAGCTCTTTACCGGCAAGCCTGCGCCAGAGAACATGAATGCAACGTCGGAGCGACTAGGAATGACGGGGGAGAGCTGCACGGGGGGCGAGATGTCAGCCATAGCAGCACGCATCACAGTCTGCGGCAACACCCAGCCTAAGAATGAGGAGGCATCCCCCAGCAAGTGCAGCTCCTTCGTCCAGCTGCCAATCCCAGAGAACAAAGTCTGCCCCATGTAGACCAACAGAAGACTATCCCACCCCTGAACTCTCCTCCAGTCCTCACTGCCTTTTCATCCTCCCCTTCCATTGCTATGCAGATGCATCTTCTCTTACCCACCAACTTCTTGTGGTATGTGTTAGTTTAAAGATGCCAGGTGTAACCACAAGGGTTCCCTGGTTGACTTGTTATGTATTAGTAGACATGGAGGGAAACCGTAGCCCAAAAGAGGGACATAATGCTTTCATGTATGTCAAGCAGCCAGATCACCCTGACTGCATCTATCTGCTGAAAGTCATCTGAGGCTAAGTAGGGTCAGGCCTGGTTGATCTCTAGGGTAGGAGACCAGATGCTTTTGGAAATTGTGTTAGAGTGCCAGTAGGGGGCATTCTTCCCTCCTCAATACCTTAGTCCATGTTTTCTGTGGACACTGCTCCACAAAGGATTCCCTTATCCCTCATACCACCAATATATTTCACAGACATGGATTACCAACTGGGGTAATTTTGACCCCAAGAAGAAACTATTGGAAAAAGCAACAATCATAGCAAAATATCTAATTAATTATTATCAAAACATCATTAgatatgtaaataaaataaatacttttCACAAAATTACAGGTCATTTGCATATTCTAGAAAACAAGAATATACATGTCACTTAAATAATGTGCAGCTCTTTTCCAAAATACAATCCACAAGTACTATTAAGCCAATTTACCATCATTTGATTGTGTTATCATTTCGTTTTTAGAATGTTGATGTAAATATACATTTAGTCTTATTTGGTAAAAATGACTGGCATTTTAAAGGGGCAGTACACCAACATTTGAAATATacttaattttaaaaagtgattaATCCATTGAACCTGTGAGACAATGACCAACAATATGGCTtcgttttctttattttcttacCCCAAAGCCAGCATGAGCATAGTTGCTAATTGAAACAATGGCAGTGGTAGGGCCTATGGCTGTAGGCTTCAGAAAGCATGCTCAAATCTTCAGTCACTTCAAACCAAATGTTATAGCAACCCAAATACCATAACAAGTTGCACATCTAGAATATTGGAGGATTTTATAGGaattaatgtatttatataacaCTTCCCGTAGAATTACTATTTTTCGAAGAATACACAGCAATACAACACTATATGTACATTTAGAGGGTAGCTGGTTTCTGTATTACAGTTCTACCAAGTATTCATACTGACATACTTTTAATGAGCTGTTTTGACTGCAACtaagcatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgggagaggcctgtaatgttc

Function

NR:

description
vertebrate ancient opsin-like isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580254.2 False 2799 mRNA 0.43 5 15167238 15186778
XM_021580253.2 True 2961 mRNA 0.43 5 15167238 15189583

Neighbor

gene id symbol gene type direction distance location
LOC110503081 LOC106604947 coding downstream 259016 14812440 ~ 14908222 (-)
LOC110502313 LOC106604940 coding downstream 409483 14497002 ~ 14757755 (-)
LOC118943949 NA coding downstream 637883 14529258 ~ 14529355 (-)
LOC110502312 kndc1 coding downstream 700175 14376236 ~ 14467063 (-)
LOC110502308 blnk coding downstream 1187468 13967514 ~ 14061826 (-)
LOC110502317 LOC106605012 coding upstream 48049 15237632 ~ 15429967 (-)
LOC110502321 NA coding upstream 305291 15494874 ~ 15498318 (-)
pwwp2b pwwp2b coding upstream 329237 15518820 ~ 15526522 (-)
LOC118943902 NA coding upstream 345247 15534830 ~ 15536064 (-)
LOC110502324 LOC106605068 coding upstream 444064 15633647 ~ 15646248 (-)
G1834799 NA non-coding downstream 3253 15161796 ~ 15163985 (-)
G1834248 NA non-coding downstream 6715 15160266 ~ 15160523 (-)
G1834240 NA non-coding downstream 9403 15157624 ~ 15157835 (-)
G1834238 NA non-coding downstream 9793 15157243 ~ 15157445 (-)
G1834226 NA non-coding downstream 20119 15146763 ~ 15147119 (-)
G1834944 NA non-coding upstream 339702 15529285 ~ 15529510 (-)
G1835042 NA non-coding upstream 503724 15693307 ~ 15696580 (-)
G1835093 LOC106605092 non-coding upstream 551400 15740983 ~ 15744099 (-)
G1834810 NA other downstream 319 15166209 ~ 15166919 (-)
G1833570 NA other downstream 646309 14520349 ~ 14520929 (-)
LOC110502275 LOC106604599 other downstream 2577538 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 2771591 12392924 ~ 12411810 (-)
LOC110502234 LOC106604225 other downstream 3213605 11907827 ~ 11953940 (-)
G1834927 NA other upstream 309171 15498754 ~ 15500261 (-)
tmem254 cj057 other upstream 476620 15666203 ~ 15671223 (-)
G1835092 NA other upstream 556055 15745638 ~ 15747735 (-)
LOC110502353 LOC106605805 other upstream 2233892 17420323 ~ 17425430 (-)
G1837980 NA other upstream 2520189 17709772 ~ 17719204 (-)

Expression


Co-expression Network