tmem254 (cj057)


Basic Information

Item Value
gene id tmem254
gene name cj057
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15666203 ~ 15671223 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580270.2
ATAAAGAAAGATTGACATCATCCTACTCTAATCCCATTCAGAGACAGCAGTCTCGGTACAAAAGCGTACCTACTGTTTTTGTTGCACGTGTTAATTTGAGAGCGGGACAAGTTAAACGCAACCATGGCCAAAAGCGATGGGTGTCATTATTTTAGAAGAACCAGTGTTTTTTGGATAACTACAGTGGCGCTTTCGATGGGATACTTCACATGGACAGTGTTCTGGCCACAGCAGGTCCCCTATGACAACCTGGGCCCGCTTGGCACCCTGTCCAGATACCTGGTGGGCAATTACCATTCTCTCATGTACAAAGGATGGTGGGCAACCTGGGTCATCCACGTGGCAGAAGCCCTTGTTGCCATGAAGGTCTGCAGTGACAAAGGGGTGGACGGCACAATGACACGTTGCCTCTGGTTTATCCAGACGGTGCTGTTTGGCTTTGCCTCTCTCGGCCTGCTTCTCAAATACAAACCTGACCACAGGACCAAACAACACTGATGCCACAAGGAAGACCCTGCTGCAGAACAGAGTCTATAGTCTTTATAGACTACACCACCACTTCCTCTACAAATAATGAGTGGCCATGGCATGATGTGAACTTTTATCTGCAATCTGTTTGGGAACAAGATAGTCATTTGTGATTCCAGATTGTACAGTGCCCAGAGAGGACCATGAATAAAATAACTTACAACATTGTGATTGTTAAGGACCTTTAGACCTTCTGATTGAACAGTAGAAACATTCAAGCCATCAAAACTCTCCATCTTACAATACATAGCTATTGTGAAGCTTCCCACCACACACCCAACATTCCTTAGAAAAaaaattcactttttttttttatccagagcATATTTTAGGACAGAATGCAATGCACTGTCTACACAGAGATTATCACAAGGTTCAAAATGACAAAATATTTTCTGTTTTATATCATGATGGAAAAGTACCAAGTTTTCCTACAAAATGTTTTCTAATCATGCTACAGCATTTTCAAATGTTAAGTTCAGATCACCCATTATAATCACTGTTTCTTGTTTTAATGAAAAAGGACTACAGATGTTTCTTAACTTtcattagattagattagattaaTCCATTTGCCTTTAAGCATGAGCATGCTGGGAATTAATTCACAAATTAATACAGATAAGGGATAAGATGAGAGACGAAGAGTGAAGTTCTCTCATTTATAACGTGTGACAAATAAAGAGTGATTGATGAACAAA
>TU2101434
ACAGCAGTCTCGGTACAAAAGCGTACCTACTGTTTTTGTTGCACGTGTTAATTTGAGAGCGGGACAAGTTAAACGCAACCATGGCCAAAAGCGATGGGTGTCATTATTTTAGAAGAACCAGTGTTTTTTGGATAACTACAGTGGCGCTTTCGATGGGATACTTCACATGGACAGTGTTCTGGCCACAGCAGGTCCCCTATGACAACCTGGGCCCGCTTGGCACCCTGTCCAGATACCTGGTGGGCAATTACCATTCTCTCATGTACAAAGGATGGTGGGCAACCTGGGTCATCCACGTGGCAGAAGCCCTTGTTGCCATGAAGGTCTGCAGTGACAAAGGGGTGGACGGCACAATGACACGTTGCCTCTGGTTTATCCAGACGGTGCTGTTTGGCTTTGCCTCTCTCGGCCTGCTTCTCAAATACAAACCTGACCACAGGACCAAACAACACTGATGCCACAAGGAAGACCCTGCTGCAGAACAGAGTCTATAGTCTTTATAGACTACACCACCACTTCCTCTACAAATAATGAGTGGCCATGGCATGATGTGAACTTTTATCTGCAATCTGTTTGGGAACAAGATAGTCATTTGTGATTCCAGATTGTACAGTGCCCAGAGAGGACCATGAATAAAATAACTTACAACATTGTGATTGTTAAGGACCTTTAGACCTTCTGATTGAACAGTAGAAACATTCAAGCCATCAAAACTCTCCATCTTACAATACATAGCTATTGTGAAGCTTCCCACCACACACCCAACATTCCTTAGAAAAaaaattcactttttttttttatccagagcATATTTTAGGACAGAATGCAATGCACTGTCTACACAGAGATTATCACAAGGTTCAAAATGACAAAATATTTTCTGTTTTATATCATGATGGAAAAGTACCAAGTTTTCCTACAAAATGTTTTCTAATCATGCTACAGCATTTTCAAATGTTAAGTTCAGATCACCCATTATAATCACTGTTTCTTGTTTTAATGAAAAAGGACTACAGATGTTTCTTAACTTtcattagattagattagattaaTCCATTTGCCTTTAAGCATGAGCATGCTGGGAATTAATTCACAAATTAATACAGATAAGGGATAAGATGAGAGACGAAGAGTGAAGTTCTCTCATTTATAACGTGTGACAAATAAAGAGTGATTGATGAACAAA

Function

NR:

description
transmembrane protein 254

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580270.2 False 1229 mRNA 0.40 4 15666203 15671223
TU2101434 True 1186 TUCP 0.41 4 15666203 15671180

Neighbor

gene id symbol gene type direction distance location
LOC110502324 LOC106605068 coding downstream 19955 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 130139 15534830 ~ 15536064 (-)
pwwp2b pwwp2b coding downstream 139681 15518820 ~ 15526522 (-)
LOC110502321 NA coding downstream 167885 15494874 ~ 15498318 (-)
LOC110502317 LOC106605012 coding downstream 236236 15237632 ~ 15429967 (-)
LOC110502330 LOC106605086 coding upstream 31019 15702242 ~ 15705419 (-)
LOC110502332 mcfd2 coding upstream 128147 15799370 ~ 15804977 (-)
LOC110502333 LOC102778633 coding upstream 193848 15865071 ~ 15869051 (-)
trnai-uau-47 NA coding upstream 704657 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 975157 16646380 ~ 16646432 (-)
G1834944 NA non-coding downstream 136693 15529285 ~ 15529510 (-)
G1834799 NA non-coding downstream 502218 15161796 ~ 15163985 (-)
G1834248 NA non-coding downstream 505680 15160266 ~ 15160523 (-)
G1835042 NA non-coding upstream 22084 15693307 ~ 15696580 (-)
G1835093 LOC106605092 non-coding upstream 69760 15740983 ~ 15744099 (-)
G1835094 NA non-coding upstream 73004 15744227 ~ 15745282 (-)
G1835092 NA non-coding upstream 74415 15745638 ~ 15747735 (-)
G1835016 NA non-coding upstream 79852 15751075 ~ 15752563 (-)
G1834927 NA other downstream 165942 15498754 ~ 15500261 (-)
G1834810 NA other downstream 499284 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1145274 14520349 ~ 14520929 (-)
LOC110502275 LOC106604599 other downstream 3076503 12580816 ~ 12651383 (-)
LOC110502269 LOC106604550 other downstream 3270556 12392924 ~ 12411810 (-)
LOC110502353 LOC106605805 other upstream 1752252 17420323 ~ 17425430 (-)
G1837980 NA other upstream 2038549 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 2054040 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 3178474 18849389 ~ 18854222 (-)

Expression


Co-expression Network