LOC110502330 (LOC106605086)


Basic Information

Item Value
gene id LOC110502330
gene name LOC106605086
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15702242 ~ 15705419 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580273.2
ACGAGCAATAGTCTAGTGTCACCTCTTACCACAACTTAGTTAACAAGCGGTGACTTTATACACAGGGCATTGAATCAAGTTATTTCAGTTTTATTAGAATGGAGTACCAAAAAGCATCAGAGATTAACGGCGTCTGCAATGGAAAAATTGTTACAGAATATCTCAACGGGTTCAGTGAAAAATCCATAGAGGCAAAGAAAGCTGAATTGATGGACAAGGAGGAGAAGTCCCACAAGGAGTCAGAGGATGTGTGCAAGATATCTGCCATTGAAAGAGCCTACGGCATCGTACTTCGAGAACTGGGAGAAGACGTGGAACGTGAGGGTCTACTGCGTACACCATTACGGGCAGCCAAAGCAATGCAGTTCCTCACCAAAGGTTATCACGAGACAGTAAATGACATCCTGAACAATGCCATCTTCGACGAGAACCACAACGAGATGGTGATCGTGAAGGACATtgaaatgttctctctctgtgagcACCATCTCGTACCCTTCTTTGGCAAGGTTCACATTGGATATCTTCCGAACAATAAAGTGGTTGGTCTGAGCAAGCTGGCAAGGATTGTTGAAATCTTCAGCAGGAGGCTTCAAGTGCAGGAACGCCTGACCAAGCAGATCGCTACAGCAATCTCAGAGGCATTAGAGCCTGCAGGCGTAGCAGTCGTCATTGAGGCAGCTCATATGTGCATGGTGATGAGgggtgtgcagaagatgaacaGCAAGACCGTGACAAGCGCCATGCTGGGACTCTTCCAAGAGGATCCCAAGACGCGGGAGGAGTTCTTGGCTCTGATCAGAAACAACTGACCCACTTGGGCCGTTGTTACCTCACCCTGTCTTCCCAAGCAAAAACAGCAATCTCTTCAGCTACCACCAAACAATGCAAGATTGTTttcttctttcttttctctcctgcATCTCATTCTTTCATTGATCTTAGCTAAGTATGTTCAGTCAGGTAGGGGGGTTGGGGttgaaatactatttgaaatctttcaaatatttTGAGCGCTTTTCTCTGGTGCACCTGGAGTAAAGAGCCGGGGTTTGCAGTTTGGGAACAATCGCTAAAACTGATATATCAGGGAGTCATGATCAGGGATTATAAACTATAAGGAACTTGATATACGTTTTATAAGTTATGTGTAGTTATGTGTAGTCCTTGGATCGTTTCATATTAAGTGCTGCTGCCAAAGGCCCCTCTGTACCCACCTTCAGAGGAAACGCCTTACCGTTACTGTATCGCAAGTGCTTACATTGTTTAGATTTTTTCTTAGTATTTTGGCTGTATATTATGGACATGGTATTCCTAGAAACTTGAAGCTGAAATATGACCCTCATAACATTGACATTTGTTCTGTTTGGACTTAACTCTTGTGCTAGTAAGGGGTGTCAATATCTAGTTGTGCAATGGCTCAAGGTAATAATGATATAGGAGCATAACAATAACAATGGAAATGTTCTGTAAAATGCCTCTAACCCAAATGTTGGATCACATGATCATGACGATGCTAGTTAATGTTAAAAATGTCGATTTGTCAATCTTATGAGTTTGAACATTACATTTAGAAATAATTAAATATTTAACCTGCTTTAAAGTTGCTTTCTTGGTTTTGTAATTAAGATATTTGCTTTAGGAAAAGACTTGCCTCGATTTCCCGGATTCTATAAGCTGAATTAGTGTGTTCATAGTCATTAAATGCACATTTATATGTATTAAATACTAACCTGGATGAACAGGTATTTTTTGTTGAATAAGATACAGGTcaaactgtcaaaataaaggaaatccT

Function

NR:

description
GTP cyclohydrolase 1-like

GO:

id name namespace
GO:0046654 tetrahydrofolate biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003934 GTP cyclohydrolase I activity molecular_function

KEGG:

id description
K01495 GCH1, folE; GTP cyclohydrolase IA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580273.2 True 1798 mRNA 0.41 6 15702242 15705419

Neighbor

gene id symbol gene type direction distance location
tmem254 cj057 coding downstream 31019 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 55994 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 166178 15534830 ~ 15536064 (-)
pwwp2b pwwp2b coding downstream 175720 15518820 ~ 15526522 (-)
LOC110502321 NA coding downstream 203924 15494874 ~ 15498318 (-)
LOC110502332 mcfd2 coding upstream 93951 15799370 ~ 15804977 (-)
LOC110502333 LOC102778633 coding upstream 159652 15865071 ~ 15869051 (-)
trnai-uau-47 NA coding upstream 670461 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 940961 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 967990 16673409 ~ 16764042 (-)
G1835042 NA non-coding downstream 5662 15693307 ~ 15696580 (-)
G1834944 NA non-coding downstream 172732 15529285 ~ 15529510 (-)
LOC110502317 LOC106605012 non-coding downstream 458759 15237632 ~ 15429967 (-)
G1834799 NA non-coding downstream 538257 15161796 ~ 15163985 (-)
G1835093 LOC106605092 non-coding upstream 35564 15740983 ~ 15744099 (-)
G1835094 NA non-coding upstream 38808 15744227 ~ 15745282 (-)
G1835092 NA non-coding upstream 40219 15745638 ~ 15747735 (-)
G1835016 NA non-coding upstream 45656 15751075 ~ 15752563 (-)
G1835096 NA non-coding upstream 50143 15755562 ~ 15755761 (-)
G1834927 NA other downstream 201981 15498754 ~ 15500261 (-)
G1834810 NA other downstream 535323 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1181313 14520349 ~ 14520929 (-)
LOC110502275 LOC106604599 other downstream 3112542 12580816 ~ 12651383 (-)
LOC110502353 LOC106605805 other upstream 1718056 17420323 ~ 17425430 (-)
G1837980 NA other upstream 2004353 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 2019844 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 3144278 18849389 ~ 18854222 (-)

Expression


Co-expression Network