XLOC_003738


Basic Information

Item Value
gene id XLOC_003738
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 44447688 ~ 44450363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008706
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggatggatggatagatacatagagttgaagtcagaatttttagccctcctttgaatttattattattttttagattcaggaaattttcacggtatgtctgataatattttttcttctggagaaagtcttaaagCTGTACACtgggatgcttttcatttgcgtttattGTCAGCATTTTCGAGACGTTTttctggattcaaacccaagcgatttttcactggcgtcgagcagaagagtgcgacacaactttaagcttctgataCCCTCTTATAACTTGTTAAAGTTACTAGCGATTCgtacaagcatggatggttcaagcagcagctctagCTCTAGCGATGATGAAATGACTATTGTTCACCAGTGACAAACAAAtgtgccaatctgattggaggAGGTTTTTACgtggcgtaaaaaaaaaaaaaaaaatgagcatgaggcgtttctttaaaaattacgcttttgcgcctgccgttttgtgcgttggtgtgcacaatcacattgacgccctttatttaatCACAAGGGGTTAAACGTCAACAGAAAACCCGAGCAAAAATCATCccagtgtgcacgggcctttatttgttttatttcggctaaaataaaagcagtttttaattttctaaacaccattttaaggacaaaattattagcccctttaagcaatatttttttctcgatagtctaccgaacaaacAATCGGtacataataacttgcctaattaccctaacctgcctagttaacctaattaccctagtgaagcctttaaatgtcactttaagctgaacactagtgtctgaagaatatctagtttaatattatgtgctgtcatccatgacaatagataaaataaatccagttattagagatgagttattaacactattatgattagaaatgttgaaatgtgttcttttctgttaaacacaaattggggaaaaaataaacggggggctaataattctgacttcagctatagACCGACAGAaagactctcagaaataaaggtatgtgagctgtcactggggtggtaccttttcgaaaggtaccAATTTGTATCTAAAAGGTCCATTTTAATACTCCaacttgaggtattaatatggaccttttagatacaaatttgtacctttcacaaccaccccagtgaccgctcacatacctttatttctgagagtgtagatagATGTGTACAATtctatatacataataaatatacaccgTACACTCATTccaatacaaacttttattttgtgattAGTTGCGAGTTGATCGTTTAACAGCACTACGGTAAACAGTATACATTTTTGGTTTTCTATATTAAGCTAAATTGGATTGATCTGAATGGTGATACGGGTGGAAATGAAGAACACTACCTGGCCAGGATGATGAATCAGAGTCACTCTATTTGGATTAatttttgtataataattataGAAAAGAGCGATGAAGCCGTTTACTCACTttcgccatatatatatatgtataagtgCCATCGGTTCTAACAAATCTCTGTTTTTCAAATAGAAACGGTGTTTGAGTCCAGCTCTTTCACCTTAACAAgcctgaattaaaaaataatatttgtgcCATTGTTGACGCTCTTAACACCTCATATAACTGTGAACAGCATTTACAATCTTTCTCTTCGCATTTTTATATAAAAGGGAATCGGAAAGCAGCTTGAAATTATTTTGAGGTATTAAGTGTATTTTCGTCCTTTGACCGTATGAagatgctttttgtttttttgcgtaAATAAACACCCTTGCATTGCTCTGAGCTGATTAACACACCATAAagatcagtttttttattattattgtttttatgatgTTTTGGGATGATTAACTGTGAAAAGGGATGCGTTTTAAGTAATTATGTCTCACTTTTAAGTCAACAATTTAAACAGGAATTTATCTGCTGGTGTTATAAGTATTGGTTAGATTTAAGTCAGATGTCTATGGTTAGGACTGTAGAGGTTGCAAGATTGCTAATCAGTGATTATTTCTGTGGATGTTTTGTTATAAACATGTTGAAGGTTTCAGTGGTTGGTTCTGAACCAATCAAAACCAACAATTTTAACATGAGTTTAGATTTTGACAATATTTCCAAATGTTCAACAAGCCAAACCACTCAAACTCAGAGCATGTTAGAATTACTTGCCTGAACCCTGATGCTTTAAGTATTCACAATATACTTTTGGCTCAATTGTATCTTACATgagtttgttttatttgagcCATTAAAAGCAGGAGTGTGGTGCCTTGTGTACCTTTACAGTGCCATATTTtcaaataatcatttttaataacattttgtttCTCAACTTTTTTGGTATTTGTAAAGTAACATGGTGATGATGCTGCCATACACTGATATTGTAACCAATAAAAAGACTTTTAaccatatctcaaaaaacatgttCAGTTTTATTGACTCATTTAATGTGTGTGATTCATGTACATATGGGTATGTAGGTTTATTTCATCTAAGGAAAATTATACCAAAACAAAATAACCAGTTACTTGTTTTCAATTAAAACACGTTCATGTATATTCGAAGGACGAGCACTTGATATTTGTAATTCAGGTTTCGTATTTCGTCT

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008706 True 2676 lncRNA 0.33 1 44447688 44450363

Neighbor

gene id symbol gene type direction distance location
XLOC_003728 NA coding upstream 329 44226200 ~ 44447359 (+)
XLOC_003737 NA coding upstream 48318 44394335 ~ 44399370 (+)
XLOC_003736 NA coding upstream 56147 44384924 ~ 44391541 (+)
XLOC_003735 NA coding upstream 72506 44369127 ~ 44375182 (+)
XLOC_003734 srsf7b coding upstream 84656 44356504 ~ 44363032 (+)
XLOC_003739 ero1b coding downstream 52047 44502410 ~ 44524932 (+)
XLOC_003740 NA coding downstream 89141 44539504 ~ 44542998 (+)
XLOC_003741 nid1b coding downstream 97846 44548209 ~ 44603789 (+)
XLOC_003742 rbm34 coding downstream 166658 44617021 ~ 44637842 (+)
XLOC_003743 NA coding downstream 226143 44676506 ~ 44752657 (+)
XLOC_003369 CR854846.2 misc upstream 28324606 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 31735692 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 31753425 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 31762089 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 31767660 12679732 ~ 12680028 (+)
XLOC_003733 CABZ01100187.1 non-coding upstream 111908 44335666 ~ 44335780 (+)
XLOC_003745 NA non-coding downstream 342140 44792503 ~ 44803305 (+)
XLOC_003747 FO744859.1 non-coding downstream 401111 44851474 ~ 44851593 (+)
XLOC_003748 NA non-coding downstream 457606 44907969 ~ 44911219 (+)

Expression


Co-expression Network