XLOC_037380 (lrrc3)


Basic Information

Item Value
gene id XLOC_037380
gene name lrrc3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 42157578 ~ 42164744 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073553
TCACTGCAAAGGCGACTCGTGCACCCAACTATCAACAAGTATGTTTCCAAAGCCGGCAGGAGGGATTTCTAGTGAACGGAGCCCTCTTCACATCTTTCTTCTGCTTTTGGTTTCTAATTAAAACTTGGCTGTAGAACATTTCCCTCTCAAATGTTTAATTGCCTCTCAGATGTTGATGGAATCGTTTGGATTTTCTCCAGGAAACTCACAATGTCTTCAAACACCTGAGAATTAAAACCACTCGTCTACACGTGTTCACGGGGTGTTAATAAGGGAAAACTCCCGCTGTTGGAACGACACCCTGACCTgtaatgtttattcattaatttttttccgATATGGCATGGATTAATGATGACTGCCCTTGAACTGTAGAGCATTCCGAAAGTAGCTGGACATGACTTTCCCTGCAGGGGCTTATGTGTTAAGGAAAGTCTTCATCCCTCATGGCTGTCCCCTTATCTTCAGATTGCTTTTAGCCGTGATTTGTCTGAGCGTGCCGAGTTTTGCTTGTCCCAAGAGCTGCCACTGCTCTGAGAGGAATAGCTTAACAGTAGTGCAGTGCTCTTCTCGAAACCTAGAAGAAATTCCTCCTGACCTTCCGCACGATACTGTGTCGCTTCAACTCTCCTCCAATCATATCACCAAAATACCAAACCAGGCTTTCAAAAACCTGCCCTGGCTCCAAGAGCTGGACTTGTCGAGGAATGCTATTGAAACCGTGGACGCTGGGGCATTTAAGGGTGTCAGCGAGAGCTTGCGGACGCTCGACCTGTCCCATAATCACATGCAAGGTGTCCCCAAGGAGGCCTTTGCTCGGCTTCATGCCAAAATCAGCCTGTCTAATAATCCGTGGCACTGTGAGTGTACTCTGCAGGAGGTTTTACGTGAACTTCGCCTGGACCCTGAGACGGTGAACGAGGTGAGCTGCCACACCTCCGATCAAGAAAAGTACGCAGGCAAACCTGTCATCCAAGTCTTGGATTCAGGCATAAACTTTTGTAACTTCCACCATAAGACAACTGATGTTGCCATGTTTGTTACCATGTTTGGTTGGTTCACAATGGTTATTGCTTATGTCATCTATTACGTACGGCATAACCAGGAAGATGCCAGGAGACATCTGGAGTACCTCAAGTCTTTGCCAAGTAGCTCTCAGATTAGTAAGGACTTTGACACAATCAGCACTGTTCTCTAG

Function

symbol description
lrrc3 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in nervous system. Orthologous to human LRRC3 (leucine rich repeat containing 3).

GO:

id name namespace
GO:0031012 extracellular matrix cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080327-13 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Is expressed in nervous system. Orthologous to human LRRC3 (leucine rich repeat containing 3).

Ensembl:

ensembl_id ENSDARG00000078415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073553 True 1198 mRNA 0.46 2 42157578 42164744

Neighbor

gene id symbol gene type direction distance location
XLOC_037378 pcbp3 coding upstream 30350 42040557 ~ 42127228 (+)
XLOC_037379 NA coding upstream 49492 42102201 ~ 42108086 (+)
XLOC_037377 BX247868.1 coding upstream 119259 41990086 ~ 42038319 (+)
XLOC_037376 col18a1a coding upstream 178073 41821613 ~ 41979505 (+)
XLOC_037375 BX927363.1 coding upstream 351223 41788217 ~ 41806355 (+)
XLOC_037382 si:dkey-10c21.1 coding downstream 104315 42269059 ~ 42270960 (+)
XLOC_037383 NA coding downstream 184214 42348958 ~ 42500284 (+)
XLOC_037384 gulp1a coding downstream 381760 42546504 ~ 42650623 (+)
XLOC_037385 NA coding downstream 567455 42732199 ~ 42905622 (+)
XLOC_037386 CU855879.1 coding downstream 1166651 43331395 ~ 43331511 (+)
XLOC_037374 dre-mir-26a-1 non-coding upstream 423968 41733533 ~ 41733610 (+)
XLOC_037372 dre-mir-732 non-coding upstream 474568 41682926 ~ 41683010 (+)
XLOC_037387 BX470133.1 non-coding downstream 1610507 43775251 ~ 43775365 (+)
XLOC_037389 BX649590.1 non-coding downstream 1690751 43855495 ~ 43855610 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_12387605_12388405 LRRC3 coding CI01000009 null 12385222 ~ 12390665 (+)