LOC110502332 (mcfd2)


Basic Information

Item Value
gene id LOC110502332
gene name mcfd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15799370 ~ 15804977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580277.2
GCAATGCCCAAAAAGGGTGAAGATAGTTAAAATACAAATAGCTAAAGTGAACGGTTCCACGTCTGTTTTTCAGCTGACACATCATGGAGCATCTGGAAGGTGTGATTGACAAGCCTGAGTCAGATATGTTGCCACAGGAGCTGCAGTTGCACTACTTTAAGATGCATGACTATGATGGCAACAACTTACTGGATGGGCTGGAGTTGGCCACAGCCATCACTCATGTACACAAAGAGgaaagaggagaggaaagccaGCCTATGAAAGAGGAAGACCTCATAAGCCTTATAGATGACGTTCTAAGGGACGATGACAAAAACAACGATGGGTACATAGACTACGCCGAGTTTGCCAAGTCCCTGGAGTAGAGGAGAGACGCTGCCTAACTGCTGAGACCTCTCTCAGTGCACTGCACATAACCACGCCACTTTCCATCTCAAAGCAAAATCTCTTGTTTATTTACCTGAGCCAGTGTACATGTCTCACGCTCTCTGTGGTGCTAATCACTATCCTTTATCCATCCAGACAGCATACCAGGGGTGGACAAACTTTTTGGCTCGAGGTCCACATCGGGAGTTTGAAATTCAATGGAGGGCTGCACAGATTTTTTTGGGGACTGATTTTCGGGCTAGCAAAAGGGCAGTAATTTAGAAATTATAATGGCCCTATATATTTTCATCTCATTTTAACCCAAAATACCCCCCCTTGAAATCACCCCTGAGATAGATACAACTGaactcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaattatctgttttaggtcagttatgatcaccactttattttaagaatatgaaatgtcagaataa
>XM_021580276.2
GCTCACAGCAATGCCCAAAAAGGGTGAAGATAGTTAAAATACAAATAGCTAAAGTGAACGGTTCCACGTCTGTTTTTCAGCTGCTGCTCTTTCTGGCTGTCTGTGTAGTTACTGTACAGCCCAGAATGGTGTTAAGAGTAAGTGGCAGGAGGAGCGTTGTGTGGGGCTGGCTACTCCTGGTCTCCTGctttctgctgtctgtctgttcacaTGAGCAGGCAGCCCAAGAACACCCACCGGAGATTCACCATCCAAACATGCACCTGGACAAGAACATGGTCCATGACAGAGAACACATCATGGAGCATCTGGAAGGTGTGATTGACAAGCCTGAGTCAGATATGTTGCCACAGGAGCTGCAGTTGCACTACTTTAAGATGCATGACTATGATGGCAACAACTTACTGGATGGGCTGGAGTTGGCCACAGCCATCACTCATGTACACAAAGAGgaaagaggagaggaaagccaGCCTATGAAAGAGGAAGACCTCATAAGCCTTATAGATGACGTTCTAAGGGACGATGACAAAAACAACGATGGGTACATAGACTACGCCGAGTTTGCCAAGTCCCTGGAGTAGAGGAGAGACGCTGCCTAACTGCTGAGACCTCTCTCAGTGCACTGCACATAACCACGCCACTTTCCATCTCAAAGCAAAATCTCTTGTTTATTTACCTGAGCCAGTGTACATGTCTCACGCTCTCTGTGGTGCTAATCACTATCCTTTATCCATCCAGACAGCATACCAGGGGTGGACAAACTTTTTGGCTCGAGGTCCACATCGGGAGTTTGAAATTCAATGGAGGGCTGCACAGATTTTTTTGGGGACTGATTTTCGGGCTAGCAAAAGGGCAGTAATTTAGAAATTATAATGGCCCTATATATTTTCATCTCATTTTAACCCAAAATACCCCCCCTTGAAATCACCCCTGAGATAGATACAACTGaactcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaattatctgttttaggtcagttatgatcaccactttattttaagaatatgaaatgtcagaata
>XM_021580275.2
TCAGAATTTAGCTGTCGTGTCCGTGGGTTGAAAGGTGACTACGGCTCACAGCAATGCCCAAAAAGGGTGAAGATAGTTAAAATACAAATAGCTAAAGTGAACGGTTCCACGTCTGTTTTTCAGCTGctagCTGCTCTTTCTGGCTGTCTGTGTAGTTACTGTACAGCCCAGAATGGTGTTAAGAGTAAGTGGCAGGAGGAGCGTTGTGTGGGGCTGGCTACTCCTGGTCTCCTGctttctgctgtctgtctgttcacaTGAGCAGGCAGCCCAAGAACACCCACCGGAGATTCACCATCCAAACATGCACCTGGACAAGAACATGGTCCATGACAGAGAACACATCATGGAGCATCTGGAAGGTGTGATTGACAAGCCTGAGTCAGATATGTTGCCACAGGAGCTGCAGTTGCACTACTTTAAGATGCATGACTATGATGGCAACAACTTACTGGATGGGCTGGAGTTGGCCACAGCCATCACTCATGTACACAAAGAGgaaagaggagaggaaagccaGCCTATGAAAGAGGAAGACCTCATAAGCCTTATAGATGACGTTCTAAGGGACGATGACAAAAACAACGATGGGTACATAGACTACGCCGAGTTTGCCAAGTCCCTGGAGTAGAGGAGAGACGCTGCCTAACTGCTGAGACCTCTCTCAGTGCACTGCACATAACCACGCCACTTTCCATCTCAAAGCAAAATCTCTTGTTTATTTACCTGAGCCAGTGTACATGTCTCACGCTCTCTGTGGTGCTAATCACTATCCTTTATCCATCCAGACAGCATACCAGGGGTGGACAAACTTTTTGGCTCGAGGTCCACATCGGGAGTTTGAAATTCAATGGAGGGCTGCACAGATTTTTTTGGGGACTGATTTTCGGGCTAGCAAAAGGGCAGTAATTTAGAAATTATAATGGCCCTATATATTTTCATCTCATTTTAACCCAAAATACCCCCCCTTGAAATCACCCCTGAGATAGATACAACTGaactcggaagtttacatacaccttagccaaatacatttaaactcagtttttcacaattcctgacatttaatcctagtagaaattatctgttttaggtcagttatgatcaccactttattttaagaatatgaaatgtcagaata

Function

symbol description
mcfd2 Predicted to enable calcium ion binding activity. Orthologous to human MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580277.2 False 879 mRNA 0.42 3 15799370 15804927
XM_021580276.2 False 1094 mRNA 0.45 4 15799371 15804934
XM_021580275.2 True 1141 mRNA 0.45 4 15799371 15804977

Neighbor

gene id symbol gene type direction distance location
LOC110502330 LOC106605086 coding downstream 93951 15702242 ~ 15705419 (-)
tmem254 cj057 coding downstream 128147 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 153122 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 263306 15534830 ~ 15536064 (-)
pwwp2b pwwp2b coding downstream 272848 15518820 ~ 15526522 (-)
LOC110502333 LOC102778633 coding upstream 60094 15865071 ~ 15869051 (-)
trnai-uau-47 NA coding upstream 570903 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 841403 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 868432 16673409 ~ 16764042 (-)
LOC110502346 pkdcc coding upstream 1086377 16891354 ~ 16923979 (-)
G1835121 NA non-coding downstream 1542 15796709 ~ 15797828 (-)
G1835122 NA non-coding downstream 7112 15791949 ~ 15792258 (-)
G1835115 NA non-coding downstream 18827 15780320 ~ 15780543 (-)
G1835113 NA non-coding downstream 21604 15777536 ~ 15777766 (-)
G1835112 NA non-coding downstream 22610 15776389 ~ 15776760 (-)
G1835179 NA non-coding upstream 59268 15864245 ~ 15864557 (-)
G1835183 NA non-coding upstream 66242 15871219 ~ 15871433 (-)
G1835167 tacd2 non-coding upstream 107753 15912730 ~ 15915938 (-)
G1835214 NA non-coding upstream 115496 15920473 ~ 15927155 (-)
G1835434 NA non-coding upstream 281888 16086865 ~ 16087584 (-)
G1835092 NA other downstream 51635 15745638 ~ 15747735 (-)
G1834927 NA other downstream 299109 15498754 ~ 15500261 (-)
G1834810 NA other downstream 632451 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1278441 14520349 ~ 14520929 (-)
LOC110502353 LOC106605805 other upstream 1618498 17420323 ~ 17425430 (-)
G1837980 NA other upstream 1904795 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 1920286 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 3044720 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 3307065 19111958 ~ 19145332 (-)

Expression


Co-expression Network