LOC110502333 (LOC102778633)


Basic Information

Item Value
gene id LOC110502333
gene name LOC102778633
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 15865071 ~ 15869051 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580278.2
GAGTTAAAGTACAACGGTTAAAGGCGCGTCAAACTCTCTGCTAGTGCATTCCGTGAGGTTGTAACTTTAAGCTGCGTCTATATCTCCTTGCTAAGCGTCGTAAAAAACCTGCTGCTACTATATCGCAATGGCTGATCAGCTGACAGAGGAGCAGATTGCCGAGTTCAAAGAGGCTTTCTCGCTCTTTGACAAGGATGGCGATGGCACCATCACCACCAAAGAGCTGGGCACTGTCATGCGCTCTCTGGGCCAAAACCCCACAGAGGCTGAGCTGCAGGACATGATCAACGAGGTGGATGCTGATGGTAATGGAACGATAGACTTCCCAGAGTTCCTGACCATGATGGCGAGGAAGATGAAGGACACAGACAGTGAGGAGGAGATCAGAGAAGCATTCCGCGTCTTCGACAAGGATGGGAACGGTTACATCAGTGCTGCTGAGCTGCGCCACGTGATGACAAACCTTGGGGAGAAGCTGACTGATGAAGAAGTTGATGAGATGATTAGAGAAGCAGACATTGATGGTGATGGCCAGGTCAACTATGAAGAGTTCGTACAAATGATGACAGCGAAGTGAAGGCCTTGTACAGATATTTCTTATATAAATAACTTGCCTTTTTTTCTTTGTAATTTATCTGTAAAATCTTAATAGCCCTCCCTGCTGTCCAAAGGAACTGCATGTAAACTGCATAGGCTCTGAGTCCCCATGTCCCTTTCTTTTGCTGTCATCGTGTTTTGGAGTGACGGCACGGTTTTAATAAGGAATGCCCGTCGCAGCCCCAGGGATTGGCCAGAGCTTAGAACCGTCACATCTGCTCAGCTCCAGATGCGTGGTGACGGTGGAGACCTGTCAGCTGGTTGTCACTTGGCAACACTGTTGGAATGGAAACAGTGTAGAGGAGTCAACACTGCATGGACTACGGACAAAGTATATGAAATCTCTCAGCATTGCACTACTGCAAAAAATGACTGGTGTATCTTCTAGATACTCGTACAAACTCTTTTTGTATCTGCTGTTCTATACCAGAAAACAACTTTGTTTTAATCTTACTATGCTTTTTAATGTTTTACTCACTATTCTTTTATGGCCTTTGGCCGTGCTTCAACTAATTCATTCCAAgttgtatatttttgttttccAATAAAATTTACAA

Function

NR:

description
calmodulin-like

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580278.2 True 1154 mRNA 0.45 6 15865071 15869051

Neighbor

gene id symbol gene type direction distance location
LOC110502332 mcfd2 coding downstream 60094 15799370 ~ 15804977 (-)
LOC110502330 LOC106605086 coding downstream 159652 15702242 ~ 15705419 (-)
tmem254 cj057 coding downstream 193848 15666203 ~ 15671223 (-)
LOC110502324 LOC106605068 coding downstream 218823 15633647 ~ 15646248 (-)
LOC118943902 NA coding downstream 329007 15534830 ~ 15536064 (-)
trnai-uau-47 NA coding upstream 506829 16375880 ~ 16375973 (-)
LOC118943947 NA coding upstream 777329 16646380 ~ 16646432 (-)
LOC110502345 eml4 coding upstream 804358 16673409 ~ 16764042 (-)
LOC110502346 pkdcc coding upstream 1022303 16891354 ~ 16923979 (-)
LOC110502348 LOC106605759 coding upstream 1158698 17027749 ~ 17096659 (-)
G1835179 NA non-coding downstream 514 15864245 ~ 15864557 (-)
G1835121 NA non-coding downstream 67243 15796709 ~ 15797828 (-)
G1835122 NA non-coding downstream 72813 15791949 ~ 15792258 (-)
G1835115 NA non-coding downstream 84528 15780320 ~ 15780543 (-)
G1835113 NA non-coding downstream 87305 15777536 ~ 15777766 (-)
G1835183 NA non-coding upstream 2168 15871219 ~ 15871433 (-)
G1835167 tacd2 non-coding upstream 43679 15912730 ~ 15915938 (-)
G1835214 NA non-coding upstream 51422 15920473 ~ 15927155 (-)
G1835434 NA non-coding upstream 217814 16086865 ~ 16087584 (-)
G1835450 NA non-coding upstream 250506 16119557 ~ 16119799 (-)
G1835092 NA other downstream 117336 15745638 ~ 15747735 (-)
G1834927 NA other downstream 364810 15498754 ~ 15500261 (-)
G1834810 NA other downstream 698152 15166209 ~ 15166919 (-)
G1833570 NA other downstream 1344142 14520349 ~ 14520929 (-)
LOC110502353 LOC106605805 other upstream 1554424 17420323 ~ 17425430 (-)
G1837980 NA other upstream 1840721 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 1856212 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 2980646 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 3242991 19111958 ~ 19145332 (-)

Expression

LOC110502333(LOC102778633) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1500.
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LOC110502333(LOC102778633) Expression in each Bioproject

Bar chart with 21 bars.
LOC110502333(LOC102778633) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 40000.
End of interactive chart.

Co-expression Network