LOC110502346 (pkdcc)


Basic Information

Item Value
gene id LOC110502346
gene name pkdcc
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 16891354 ~ 16923979 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039155.1
GAGGACCCCTGCCTGATGCGCGCATAGGCTACATAAGTGGTGGGCTTTGCAGTCTGTGAAGGCAAGTGTATCACCACGATCAACCTTATATGGGGAGGATCTTCAACCTGCTTGGCTGCATAAATCATAATCAAGATGAAGACGTGATCATAGCGCATTCGGCATCGTTCGAGGCATCAGTATACCATTAAGTTCTGACGCTCACGATAGAACCGTGGACTCCGGGCAAGGCTACAGAGGTGGTAGACTGCTAGGCGGGGGCTGGAGGCGAAAACAGACATATTTTAATGATATTAATAAAACTGATCACAATGAAGCGCAGAAGGATAGTGGTTGCGGCAGGTTTCTGTCTTGCCTTCTTCCTTGGTACACTGATGAATTTGCTGTATATACCAGGGTTTGAGCACCATCAGAACCATGACCATAGAGTACATCGGTACTACCACGAAAAACAGCAGCAGGTTACAGGCGATTCGCAGCTTCAAATCGGCGAGTCAGTCACTGAAGCTGTGGCCGAGTCCAATAGTAAACCTGCCGTAGGAAGCAGGCATCATCAGGACCTTCTGCTGCAGATACGAGAAAGATTCGATGAGGTTGTGCGGTACCGTCAGCGCCAAGCGCATGGGTCTGGCACCGGAGACCCAGTCCGCCAGCTGGAGAGACGGAGGCTCATGGATTCAGAGCCAGGGGACAATTGGGACCCTATCAAAGTAATTGAGCGAACCGAAAACCGACAGACGCATTTTCAAAATCGACTTTCACCTTCCATATACATGCCCACAGCATCACGGAAAGATTTCACTATGACTTTGAGCAGCGTTAACGGTACTCCGATGCTTGGCTGCAGCAGCATAGACAACGTGACCAATGTTCAGTACCTCGGCTCAGGCTACACAAAGGCTGTCTACAAGGCGTCTCTCAACAACAGCTTGTCGGTGGCTCTGAAATCGGTGGATTTCGGGGGACACGATATGGAAAATTGCGTAAAGAAATATGGTTCACCTGGAGACTGCTACAGACTGGCGTCCTTCAAAATAGTGAAAGAAATGACGCTGATGGAAAGGCTACAGCACCCCAACATTCTGAAGTTGTACGGCTACTGCTACCAAGACAGCAATGACATCCAGGACACGGTGACAGCCATCACAGAGCTGGGAAGTCCTCTGGAGATGATCCAACTACTGCAGACCTCCTGGGAGGAACGCTTCAGGatcTGTCTGAGTCTAGTGCGTCTGCTCCACTACCTGGCCCACTCCCCTCTGGGCTCTGTCACCCTGCTGGACTTCAGGCCTCGCCAATTTGTCCTGGTGGCGGGGGAGCTCAAAGTCACAGACCTGGATGACGCCAGCACAGAGGAGGCCCCCTGCTCCCCCTCCGACTGCATCATGGAGTTTCCCGCCCGCAACTTCACCCTCCCCTGCAGCAGAGGGCGCTGCTTGGGCATCAACGAGAAGCGCAACCTCTACAACGCCTACAGGTTCTTCTTTACATACTTGCTGCCTCACAGTGCCCCACCCACTCTAAGACCCCTACTGGACAAGATAGTCAACGCCACAGGAGAGCTGATATGGGGGATAGATGAGACGCTGCTTCAGTTGGAGAAAGTATTGCACCTGTACAGAAATGGATTTTACTTGCagaacagcacacagacacacataacaGactaTAAGCATGTGGTGGATGCCTCTATTCCTGAGGAGAACTACCGCTGCTGGCCATCCTATCAGCACGATGGATGTCTGCTATCAGTCTTCAGCATCACAGAGGCTATTGGTGTGTGTGAGCGCCATGCCCAGTGCCAAGCATTTGTAGTGACCAATCAGACGACCTGGACAGGTAAGAGTTAaatttacatttcagtcatttaccagacactcttatccagagcgacttacagttagtgcattcatcttaagatagctaggtgggacaaccacatatcacaggcatagaaagtacATTTTCCTTAATAGCATAGCTATCAGTAGAGTCAGAGCTACAAGGGATAATTATTATTGATATTTGTTCAGGGGAGGGTgattgaggtgaggaggaggaaggggaggaggatttcggaagatgggcagggactctgtacttgcttcagggggaagctggttccaccattggggtgccaggacagagaagagcttggactgggataagcgggagctgccctcccgtagttgtgggagggccaagagacctgaggtggcagaacagagttggatgcgagcttcgactgggAGCCAATGGAGTGTTCGGAGGAGCGGGttgacatgagagaacttgggaaggttaaAATCCAGGCGGGTTATCATTGTATGGTTGAAGACAATGTGTGGGTTGCATTCGTGTGGCtgcctgtgtgtatctgtgtgttttgTTCATAaagttccctgtgtgtgtgtgtgtgtgtgcgtgtgtgtgggaggTAAAGTACCCAGCGTTGTCAGACGTCTCTCTATTCAAACAGAGGCAGGGCCTTCAGTACCGTCGTCTCTCATCACTAACCCCTCCTTTCTAGTCACCAACTTGTATTCTTCAAGACGGGCACTGCCAGTCTGAGCTCTGCCAAGGGACGGGTCACCTACGTCAGAGTGGGCAGCTGAATCAAGGGAGGTGGAGGAGCCTTAACTGCCAAACCTCGCTCTGATTGGCTAACCTGCTCCTGGGGCATGCCCTCACGGCTTAGTGAGTCACCCCATTGGATGGGTCGGACAGAGGGAGTTGAAGATGGATCCTAGACAACACCCTCTATGGGGCATAGAGAAGCCCAAACCAGCTCACACTGAAGTGCAATAATATAACTTGGAGAACAATTTTACAATATTGCTCTTCATATGTTTCTCCGAAGGAAAATGCTGGGTTGTGCAAGGCTATAGCTCAGGGTATAGTATGGTTACCCTCCTAGCTAAGAAGGGTGACAGTGAACGCCTGAGATTTCCCTCCTGTGCCCCCTAAACTACACTACAttgtcaaaagtatgtggacaactgctcatCAAAATCattggtattaatatggagttggtcccccctttgctgctataacagtctccactcttctgggaaggctttccactagatgtcggaacattgctg
>XM_021580295.2
AGAGGACCCCTGCCTGATGCGCGCATAGGCTACATAAGTGGTGGGCTTTGCAGTCTGTGAAGGCAAGTGTATCACCACGATCAACCTTATATGGGGAGGATCTTCAACCTGCTTGGCTGCATAAATCATAATCAAGATGAAGACGTGATCATAGCGCATTCGGCATCGTTCGAGGCATCAGTATACCATTAAGTTCTGACGCTCACGATAGAACCGTGGACTCCGGGCAAGGCTACAGAGGTGGTAGACTGCTAGGCGGGGGCTGGAGGCGAAAACAGACATATTTTAATGATATTAATAAAACTGATCACAATGAAGCGCAGAAGGATAGTGGTTGCGGCAGGTTTCTGTCTTGCCTTCTTCCTTGGTACACTGATGAATTTGCTGTATATACCAGGGTTTGAGCACCATCAGAACCATGACCATAGAGTACATCGGTACTACCACGAAAAACAGCAGCAGGTTACAGGCGATTCGCAGCTTCAAATCGGCGAGTCAGTCACTGAAGCTGTGGCCGAGTCCAATAGTAAACCTGCCGTAGGAAGCAGGCATCATCAGGACCTTCTGCTGCAGATACGAGAAAGATTCGATGAGGTTGTGCGGTACCGTCAGCGCCAAGCGCATGGGTCTGGCACCGGAGACCCAGTCCGCCAGCTGGAGAGACGGAGGCTCATGGATTCAGAGCCAGGGGACAATTGGGACCCTATCAAAGTAATTGAGCGAACCGAAAACCGACAGACGCATTTTCAAAATCGACTTTCACCTTCCATATACATGCCCACAGCATCACGGAAAGATTTCACTATGACTTTGAGCAGCGTTAACGGTACTCCGATGCTTGGCTGCAGCAGCATAGACAACGTGACCAATGTTCAGTACCTCGGCTCAGGCTACACAAAGGCTGTCTACAAGGCGTCTCTCAACAACAGCTTGTCGGTGGCTCTGAAATCGGTGGATTTCGGGGGACACGATATGGAAAATTGCGTAAAGAAATATGGTTCACCTGGAGACTGCTACAGACTGGCGTCCTTCAAAATAGTGAAAGAAATGACGCTGATGGAAAGGCTACAGCACCCCAACATTCTGAAGTTGTACGGCTACTGCTACCAAGACAGCAATGACATCCAGGACACGGTGACAGCCATCACAGAGCTGGGAAGTCCTCTGGAGATGATCCAACTACTGCAGACCTCCTGGGAGGAACGCTTCAGGatcTGTCTGAGTCTAGTGCGTCTGCTCCACTACCTGGCCCACTCCCCTCTGGGCTCTGTCACCCTGCTGGACTTCAGGCCTCGCCAATTTGTCCTGGTGGCGGGGGAGCTCAAAGTCACAGACCTGGATGACGCCAGCACAGAGGAGGCCCCCTGCTCCCCCTCCGACTGCATCATGGAGTTTCCCGCCCGCAACTTCACCCTCCCCTGCAGCAGAGGGCGCTGCTTGGGCATCAACGAGAAGCGCAACCTCTACAACGCCTACAGGTTCTTCTTTACATACTTGCTGCCTCACAGTGCCCCACCCACTCTAAGACCCCTACTGGACAAGATAGTCAACGCCACAGGAGAGCTGATATGGGGGATAGATGAGACGCTGCTTCAGTTGGAGAAAGTATTGCACCTGTACAGAAATGGATTTTACTTGCagaacagcacacagacacacataacaGactaTAAGCATGTGGTGGATGCCTCTATTCCTGAGGAGAACTACCGCTGCTGGCCATCCTATCAGCACGATGGATGTCTGCTATCAGTCTTCAGCATCACAGAGGCTATTGGTGTGTGTGAGCGCCATGCCCAGTGCCAAGCATTTGTAGTGACCAATCAGACGACCTGGACAGGTCACCAACTTGTATTCTTCAAGACGGGCACTGCCAGTCTGAGCTCTGCCAAGGGACGGGTCACCTACGTCAGAGTGGGCAGCTGAATCAAGGGAGGTGGAGGAGCCTTAACTGCCAAACCTCGCTCTGATTGGCTAACCTGCTCCTGGGGCATGCCCTCACGGCTTAGTGAGTCACCCCATTGGATGGGTCGGACAGAGGGAGTTGAAGATGGATCCTAGACAACACCCTCTATGGGGCATAGAGAAGCCCAAACCAGCTCACACTGAAGTGCAATAATATAACTTGGAGAACAATTTTACAATATTGCTCTTCATATGTTTCTCCGAAGGAAAATGCTGGGTTGTGCAAGGCTATAGCTCAGGGTATAGTATGGTTACCCTCCTAGCTAAGAAGGGTGACAGTGAACGCCTGAGATTTCCCTCCTGTGCCCCCTAAACTACACTACAttgtcaaaagtatgtggacaactgctcatCAAAATCattggtattaatatggagttggtcccccctttgctgctataacagtctccactcttctgggaaggctttccactagatgtcggaacattgctg
>TU2102953
ctctttccttttcctcactcctctccctcctatcGGGCTTCTCATCAGAGTGCTGGTATGTCAGCCGGGTGTTTGAGATATGTTTTACTGGGACACAACAGGCCGTGAAGATGCAAGCCGCGTGGGCGGGCTGTGTGTTAATGAGAGCTGATATGGGGGATAGATGAGACGCTGCTTCAGTTGGAGAAAGTATTGCACCTGTACAGAAATGGATTTTACTTGCagaacagcacacagacacacataacaGGTAaatatgcacacacgcacacacaaacaggttCAGGTTAGAttagattaagggttagggttagggg

Function

symbol description
pkdcc Enables non-membrane spanning protein tyrosine kinase activity. Involved in peptidyl-tyrosine phosphorylation and skeletal system development. Located in extracellular region.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039155.1 False 3107 mRNA 0.50 7 16891354 16923978
XM_021580295.2 False 2418 mRNA 0.51 7 16891354 16923979
TU2102953 True 317 lncRNA 0.48 2 16900167 16900826

Neighbor

gene id symbol gene type direction distance location
LOC110502345 eml4 coding downstream 127312 16673409 ~ 16764042 (-)
LOC118943947 NA coding downstream 244922 16646380 ~ 16646432 (-)
trnai-uau-47 NA coding downstream 515381 16375880 ~ 16375973 (-)
LOC110502333 LOC102778633 coding downstream 1022303 15865071 ~ 15869051 (-)
LOC110502332 mcfd2 coding downstream 1086377 15799370 ~ 15804977 (-)
LOC110502348 LOC106605759 coding upstream 103770 17027749 ~ 17096659 (-)
LOC110503085 NA coding upstream 143299 17067278 ~ 17077857 (-)
LOC110502353 LOC106605805 coding upstream 496344 17420323 ~ 17425430 (-)
LOC110502354 ncoa4 coding upstream 520495 17444474 ~ 17453469 (-)
LOC118943816 NA coding upstream 530727 17454706 ~ 17471690 (-)
G1836397 NA non-coding downstream 1711 16889177 ~ 16889643 (-)
G1836312 NA non-coding downstream 11730 16879305 ~ 16879624 (-)
G1836272 LOC100136775 non-coding downstream 43147 16840570 ~ 16848207 (-)
G1836269 NA non-coding downstream 82778 16808276 ~ 16808576 (-)
G1836265 NA non-coding downstream 87202 16803942 ~ 16804152 (-)
G1836430 NA non-coding upstream 3421 16927400 ~ 16927629 (-)
G1836433 NA non-coding upstream 7399 16931378 ~ 16931645 (-)
G1836438 NA non-coding upstream 11166 16935145 ~ 16935389 (-)
G1836443 NA non-coding upstream 14223 16938202 ~ 16938499 (-)
G1836445 NA non-coding upstream 17380 16941359 ~ 16941596 (-)
G1835092 NA other downstream 1143619 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 1220174 15666203 ~ 15671223 (-)
G1834927 NA other downstream 1391093 15498754 ~ 15500261 (-)
G1834810 NA other downstream 1724435 15166209 ~ 15166919 (-)
G1833570 NA other downstream 2370425 14520349 ~ 14520929 (-)
G1837980 NA other upstream 785793 17709772 ~ 17719204 (-)
LOC110502361 LOC106605890 other upstream 801284 17725263 ~ 17781515 (-)
LOC110502394 LOC106606249 other upstream 1925718 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 2188063 19111958 ~ 19145332 (-)
G1836409 NA non-coding downstream 2408 16897468 ~ 16897759 (-)
G1836408 NA non-coding downstream 2740 16897226 ~ 16897427 (-)
G1836405 NA non-coding downstream 4988 16894917 ~ 16895179 (-)
G1836404 NA non-coding downstream 5354 16894594 ~ 16894813 (-)
G1836402 NA non-coding downstream 6236 16893585 ~ 16893931 (-)
G1836416 NA non-coding upstream 5446 16906272 ~ 16906536 (-)

Expression


Co-expression Network