LOC110502351 (LOC106605778)


Basic Information

Item Value
gene id LOC110502351
gene name LOC106605778
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17212463 ~ 17229713 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580306.2
GACATAATCATACTACGAATGTATACTACAAACAGCACCTTTGGAGCGGGAAAAGGAATACAGTCAAAGACAGTACATTTGAGAAACGCTTTGATATAGTATTGCACGTGACGTCATACCGGAAACTATCGCTTTAAACACCggacatatttatttttttacagcgTGCTTGCTTTCACTTTCAATGTTTTGATAACGTCCGTTGTTGACAGCAAATACGCGACTATTGCATTTGGAAACGGATACATTACCATTTAAGGAATATAACTTCAAGTCACATTAGATATTCGCGTGATAATATGCAAGAAATGCCGGAATCACAGCCGTCTAAATGTGAGGTGGAGCGGAATCACGAATGCATGATCCTACAACAAAGAATAGAGACGGCTAGCATTGGCAATACTAGAACAATGAAGATGGAGATGGATGTATTTAACCCTTCCCACACTACAGAGCTCCAGTTTCTCAGGTCGCGTGTTCGGGAACTGGAGAAAGAGAAGGTCGAAATGGCAGCTGAAAACCAACGGCTACATAACATGCTAGTGAAGGAGATCCCTGGCCTGCTGTCCACCATGTGGCAGACCTTGGGCCAAGCCAACCAGCCCCCCCACCCTGCAGTGTCCCCACAGGCAGTCTCTACGGCAACAGGGAGGGGCGAGAgctacacgtacacacaccaccACTCCGTGTCAGGACACTTTGGCCAAGGGTTCAGTTCTCCACTCCATCATCAGCCCATGTCCAACCGCTCAGCTATGACTCAGGACATGAATGAAAGCATGTCCAACTTTGGACCCGAGATGGCCATCAGTGAGCACAGTGTGGACGGAGACTTGGAGCTGAGTGACATCACAGAGAACGACGACCTCCACAGCTCTCTGTGTGGCTCAGCATCCAACCTACCTGTGATGAGGACATGCTCAGAGACACACTGTGTTAATGGGACTGGCCATGTTAATCAGGTGGAGGTATACCCGGGTTCCGGTGTCTTCTGTGAAATGCGGTCCTGGCATGCAGCCAATCAGACGCAGTCTCCCACGGCGATGGCGCGCACCCTGTTGCTGGGCGTGTTCGACATGGACACCCTGCTTAACAGCAACCTGCGAGGGGGGAGGAGCCGCAGACCAACGTTCCCCAACCACCGCACCGCCCTGGACCCACACAAGCTCAACGCCATCTATAATGCCACGCTGGCCCGCTTCCCATTGGCCAGGAAGGGGCAAATTGGCACCGGCATCAACTCCAAGCTGTCTGAGATCCGGTTCCGATCCAGGAGAGCCAACCGGGACCCCAGTTATCTATGAAGGACTGTTCCTGCCCAAACGCCAAGTTTATTCAATCAACATTTTTGttctagttttttattttatttatcacatTAACTATGTCAGTGTATCAGTGCATGTGCCTGCCAAATGTCTTGCCTATGAATTTTTTCACATTGGCTTTAACATTGTCTTCAGCTAGAGATACTGTGGAAGAGAATGGCAAAATTACTCAAAAGACAGCCTAATGATAGAGGAAGGATTCAAGACCAGTGGAAAAAGGTACAAAAGAACTGGCATTGATGGTTATATCCACCCTCTGTCACCAGCCAACCATTAGCAAACCACACGGGAACAGCCCCCGGGGTATTCTCTCTGACTGATAGAGATGCATAGATCCAGGACTGCTGACCCATGTGTGATCAACCAGTGGAGGAACGGAAGCTTCAGTCATGTCTCACCAGACAGACGCCTCACTGTCGTTGACCTCTACCCACTTAGaccgaggagggggggggggggtccaaatgATATTTCTCCATTGATTTCTCTGATCCTAGGCATTAAGCTAACTCCAAAAGCTCCATTACCACCCCGTGGTCCCCTCCTTaacctcttcctccatccctcttcttccCCCTGAGATAAGCATCATGCCTAATGGACCCCAGGTACTCTGAGCCTCCGGGAGGATGACGGCATGAATGAATTCATCTTAACGGACTTAAACAGTGTGTGACTCTCCCCAAGTCCACTATGTCCACAGGGCCCACATGAAGAGACTAGGACTGGAGATGTGGCTTGATGCAGATATTACATATTGGAGAAGATGTAACCGTTGGTAATGAGGAACGGTCAAGTTTGTTATTGTATATCCGGTCATGTCTGACCATTGAATATGGTGCATTAAAAGACTGCAGTTTGTCATTGTCCTTCA

Function

NR:

description
uncharacterized protein LOC110502351

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580306.2 True 2202 mRNA 0.49 5 17212463 17229713

Neighbor

gene id symbol gene type direction distance location
LOC110502347 LOC106605756 coding upstream 187774 17019443 ~ 17024689 (+)
LOC100136775 LOC100136775 coding upstream 364219 16845276 ~ 16848244 (+)
LOC110502342 LOC106605363 coding upstream 552595 16656558 ~ 16659868 (+)
LOC110502341 LOC106605225 coding upstream 675033 16534553 ~ 16537430 (+)
LOC110502340 kcng3 coding upstream 684081 16519036 ~ 16528382 (+)
LOC110502352 LOC106605787 coding downstream 70484 17300197 ~ 17403796 (+)
LOC110502355 LOC106605823 coding downstream 222653 17452366 ~ 17481755 (+)
LOC118943817 NA coding downstream 237916 17467629 ~ 17469647 (+)
LOC110502358 LOC106605838 coding downstream 259285 17488998 ~ 17503651 (+)
LOC110502359 LOC106605853 coding downstream 442508 17672221 ~ 17704270 (+)
G1836641 NA non-coding upstream 106060 17106050 ~ 17106403 (+)
G1836638 NA non-coding upstream 107870 17104325 ~ 17104593 (+)
G1836527 LOC106605759 non-coding upstream 174713 17036472 ~ 17037750 (+)
G1836507 NA non-coding upstream 182854 17002075 ~ 17029609 (+)
G1836500 NA non-coding upstream 214937 16997175 ~ 16997526 (+)
G1836825 NA non-coding downstream 19452 17249165 ~ 17249380 (+)
G1836855 NA non-coding downstream 44624 17274337 ~ 17274548 (+)
G1836879 NA non-coding downstream 62805 17292518 ~ 17292818 (+)
G1836968 LOC106605805 non-coding downstream 190654 17420367 ~ 17424037 (+)
G1836646 NA other upstream 99636 17112370 ~ 17112827 (+)
G1836321 NA other upstream 319124 16892235 ~ 16893339 (+)
G1835378 NA other upstream 1009603 16195168 ~ 16202860 (+)
G1836916 NA other downstream 92461 17322174 ~ 17325360 (+)
LOC110502370 NA other downstream 713749 17943337 ~ 17947408 (+)
LOC100136626 LOC106606089 other downstream 1060167 18269654 ~ 18300278 (+)
G1838719 NA other downstream 1718804 18948517 ~ 18949003 (+)
G1839383 NA other downstream 2292551 19522264 ~ 19523012 (+)

Expression


Co-expression Network