LOC110502358 (LOC106605838)


Basic Information

Item Value
gene id LOC110502358
gene name LOC106605838
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17488998 ~ 17503651 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580317.2
GGCCATCTTTGCCCTCGACTTGCATTTTTCCTTCTGGAGAAACATTTGCTCAGCCCTGCAATGTTTCCCGAGGTCACTGCAGCCACACAGACGCTTCGGGGAGGAGGGTGCGCGCACGCGCCCTGAATGAGGAAGACTGCATTAGTATAGTAAGCTAATTGAGAACAACATGTGACAGACACTATTGCAATGCCGTTTCTGATGACACCAAGAAGTGTGTGCATAACCGATAACTGCAACCGTGGCAAACAAACGATCGCCTTCGCGTTAGCGCTATAAACCGAAGCTCTAAACATGACAGGAACGCAAACCGTTTGTTATGCATGAGGACCTGGAAAACGGCACATTATATTTTCCTTGAACGTGTCTAGTATGTACGGACAAATGTATCAATCCATGGCCTGCGGGGTACAGAAGAATCGCTAAGTATTTAGCTACATTGTAGCAGTAGGTTATGATGTCAGGGCTTGAAACAGCGCATGGGGTTTATGATCGATTTAACTTCAGAAAACCCACCTTGCGTGCTTTTCCTCTATCCATAGCCTAATAAGAAACGCTCAATTAAACCAGCTGCAACACTTGAGAGGCTTGCAGATTTGTGGTAAATATCGTATATCCTAAACAGTAGCATATTGACTTTGAGATGTCATTTAACAGCCCACCAACGTCGGATAGTTGTATGCCTATGCTTAAAATGCACGTATTTCTTAACTGGGCACAAACCTCGAATGTCATGTAGCCTAGTAGACACATTTACCAAAATGCTACCAGGTTCTATTCAAATAACGGGAGAGACACTGTCGGGAGCTGAGATCAAGGATATTTGTGACAGCCTGAAAGAGAACAGTGTGAGGCTTCTGTCAATCAGGGGATGTCAGCTTTCGGACCGAGACTTTGGACGGGTGTGTCGTGGTGTGGCGGAGTCCCACTCACTGGCGCAACTCAACATGAACCTCGGTGTGGTCTCCACCATCAACCGAACCAAGCATCTCGCAGATGCACTCAAGACAAACAGATCGATCCAGACCCTTTTTCTCCATGGAAGCCCCCTCCTAGATGCAGGATTGGTCACCCTCAACACTGCATTGTCCACtcacccttcactggtgtctctGGACCTGGGGGACTGTATGCTGGGGGATGAGGCACTGCGGCTTATCTGTGCCATGCTGCCTCCGGATGGGGCCAAGTCAGCCTGTCCCACAGGGCTTAGAGAGCTGACTCTTAGTGCGAACCCCAGCATCACAACCAAGGGATGGGCCCGCCTGGCCATCGCTGTGGCCCACAGCTCCCAGCTCCGAGTCCTCAACTTGGACTACAACCCCCTGGGGGACCAGATTGCAGGTATGCTAGCAGTGGCTGTGGCGTCCAGCAGAACTCTGGAGGTGTTGGATCTGGAGGGAACAGGACTCTCAAATCAGTCAGCACAGGTCTTCCTCGAAATGGTGGAGAACTACCCCACCTGTCTGCGCGTGCTGGTCCTGGCTGAGAACGCCATCAGCCCCGAGCTGCAGCAGCAGATTTCCGACCTGCTCTCCGAGGGAGAGGAGGACGACGACAAGGAGGGCGAGGCACGAGGCAGTGCTGCCATCCCCACCAGGGAGAAAACGTCTTGGATCCCCCACAGCAACTCCCACCCCCAGATGGTCCTGCTGACGTCAGGTCTAGGTGAGAGCCTACTGGCTGAGACTGAGATGTGATTCCACAGCCTTCCtaccttcttttttttaaacctctTTTCTTTCTGCTAGTATGTACGCAATAGTTGCAGCATCACCTGGTAGTGTGCAATATATCACACTTTTTGCATGACCTGTAGCAACAGAATACGTTTTGGAGCAGGCACAAAATCCTTAACACACACCAAGTGTCTTATagggaattatttattttaattatgTACAGTCTATTTACAGTTCCTATTTAAAGGTTTATGTAAGCAATGAAAGTCTGTTGATAGATTGACTAGATAGGATTGTTGTGATGGTCTGATGTGATGTCAGAATAAATCTGTTTACATCTTCTTAAA
>XM_021580319.2
CCATCTTTGCCCTCGACTTGCATTTTTCCTTCTGGAGAAACATTTGCTCAGCCCTGCAATGTTTCCCGAGGTCACTGCAGCCACACAGACGCTTCGGGGAGGAGGGTGCGCGCACGCGCCCTGAATGAGGAAGACTGCATTAGTATAGTAAGCTAATTGAGAACAACATGTGACAGACACTATTGCAATGCCGTTTCTGATGACACCAAGAAGTGTGTGCATAACCGATAACTGCAACCGTGGCAAACAAACGATCGCCTTCGCGTTAGCGCTATAAACCGAAGCTCTAAACATGACAGGAACGCAAACCGTTTGTTATGCATGAGGACCTGGAAAACGGCACATTATATTTTCCTTGAACGTGTCTAGTATGTACGGACAAATGTATCAATCCATGGCCTGCGGGGTACAGAAGAATCGCTAAGTATTTAGCTACATTGTAGCAGTAGGTTATGATGTCAGGGCTTGAAACAGCGCATGGGGTTTATGATCGATTTAACTTCAGAAAACCCACCTTGCGTGCTTTTCCTCTATCCATAGCCTAATAAGAAACGCTCAATTAAACCAGCTGCAACACTTGAGAGGCTTGCAGATTTGTGGTAAATATCGTATATCCTAAACAGTAGCATATTGACTTTGAGATGTCATTTAACAGCCCACCAACGTCGGATAGTTGTATGCCTATGCTTAAAATGCACGTATTTCTTAACTGGGCACAAACCTCGAATGTCATGTAGCCTAGTAGACACATTTACCAAAATGCTACCAGGTTCTATTCAAATAACGGGAGAGACACTGTCGGGAGCTGAGATCAAGGATATTTGTGACAGCCTGAAAGAGAACAGTGTGAGGCTTCTGTCAATCAGGGGATGTCAGCTTTCGGACCGAGACTTTGGACGGGTGTGTCGTGGTGTGGCGGAGTCCCACTCACTGGCGCAACTCAACATGAACCTCGGTGTGGTCTCCACCATCAACCGAACCAAGCATCTCGCAGATGCACTCAAGACAAACAGATCGATCCAGACCCTTTTTCTCCATGGAAGCCCCCTCCTAGATGCAGGATTGGTCACCCTCAACACTGCATTGTCCACtcacccttcactggtgtctctGGACCTGGGGGACTGTATGCTGGGGGATGAGGCACTGCGGCTTATCTGTGCCATGCTGCCTCCGGATGGGGCCAAGTCAGGGCTTAGAGAGCTGACTCTTAGTGCGAACCCCAGCATCACAACCAAGGGATGGGCCCGCCTGGCCATCGCTGTGGCCCACAGCTCCCAGCTCCGAGTCCTCAACTTGGACTACAACCCCCTGGGGGACCAGATTGCAGGTATGCTAGCAGTGGCTGTGGCGTCCAGCAGAACTCTGGAGGTGTTGGATCTGGAGGGAACAGGACTCTCAAATCAGTCAGCACAGGTCTTCCTCGAAATGGTGGAGAACTACCCCACCTGTCTGCGCGTGCTGGTCCTGGCTGAGAACGCCATCAGCCCCGAGCTGCAGCAGCAGATTTCCGACCTGCTCTCCGAGGGAGAGGAGGACGACGACAAGGAGGGCGAGGCACGAGGCAGTGCTGCCATCCCCACCAGGGAGAAAACGTCTTGGATCCCCCACAGCAACTCCCACCCCCAGATGGTCCTGCTGACGTCAGGTCTAGGTGAGAGCCTACTGGCTGAGACTGAGATGTGATTCCACAGCCTTCCtaccttcttttttttaaacctctTTTCTTTCTGCTAGTATGTACGCAATAGTTGCAGCATCACCTGGTAGTGTGCAATATATCACACTTTTTGCATGACCTGTAGCAACAGAATACGTTTTGGAGCAGGCACAAAATCCTTAACACACACCAAGTGTCTTATagggaattatttattttaattatgTACAGTCTATTTACAGTTCCTATTTAAAGGTTTATGTAAGCAATGAAAGTCTGTTGATAGATTGACTAGATAGGATTGTTGTGATGGTCTGATGTGATGTCAGAATAAATCTGTTTACATCTTCTTAAA

Function

NR:

description
leucine-rich repeat-containing protein 73-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580317.2 False 2029 mRNA 0.49 6 17488998 17503651
XM_021580319.2 True 2015 mRNA 0.49 6 17489000 17503651

Neighbor

gene id symbol gene type direction distance location
LOC110502355 LOC106605823 coding upstream 7243 17452366 ~ 17481755 (+)
LOC118943817 NA coding upstream 19351 17467629 ~ 17469647 (+)
LOC110502352 LOC106605787 coding upstream 85202 17300197 ~ 17403796 (+)
LOC110502351 LOC106605778 coding upstream 259285 17212463 ~ 17229713 (+)
LOC110502347 LOC106605756 coding upstream 464309 17019443 ~ 17024689 (+)
LOC110502359 LOC106605853 coding downstream 168570 17672221 ~ 17704270 (+)
LOC110502364 mea1 coding downstream 218015 17721666 ~ 17724320 (+)
LOC110503055 NA coding downstream 276676 17780327 ~ 17785281 (+)
LOC110502368 LOC106605956 coding downstream 387240 17890891 ~ 17925131 (+)
LOC110502370 NA coding downstream 439686 17943337 ~ 17947408 (+)
G1836987 NA non-coding upstream 4192 17484245 ~ 17484806 (+)
G1836968 LOC106605805 non-coding upstream 64961 17420367 ~ 17424037 (+)
G1836879 NA non-coding upstream 196180 17292518 ~ 17292818 (+)
G1836855 NA non-coding upstream 214450 17274337 ~ 17274548 (+)
G1836991 NA non-coding downstream 1264 17504915 ~ 17505168 (+)
G1836994 NA non-coding downstream 1923 17505574 ~ 17506069 (+)
G1836993 NA non-coding downstream 2572 17506223 ~ 17507897 (+)
G1836992 NA non-coding downstream 8176 17511827 ~ 17512017 (+)
G1836998 NA non-coding downstream 14737 17518388 ~ 17518590 (+)
G1836916 NA other upstream 163638 17322174 ~ 17325360 (+)
G1836646 NA other upstream 376171 17112370 ~ 17112827 (+)
G1836321 NA other upstream 595659 16892235 ~ 16893339 (+)
LOC110502341 LOC106605225 other upstream 951766 16534553 ~ 16537430 (+)
LOC110502340 kcng3 other upstream 964172 16519036 ~ 16528382 (+)
LOC100136626 LOC106606089 other downstream 786229 18269654 ~ 18300278 (+)
G1838719 NA other downstream 1444866 18948517 ~ 18949003 (+)
G1839383 NA other downstream 2018613 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 2533472 20037044 ~ 20058237 (+)

Expression


Co-expression Network