LOC110502364 (mea1)


Basic Information

Item Value
gene id LOC110502364
gene name mea1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17721666 ~ 17724320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580328.2
ATAATTGCGtgtctacttatattaactatataattatatatatacgcCGACTGTATGAcagctagcaaattaattagttaactaacgttagcctgcctagctggaacttctgaagaatGAAActgttttatttctacaatttccaaaagaataagcaaacaaaaacataattacttTTACGACACGTGTTTATGCCGTCATCTGCATTAGAGGCACAATTTCTAACcgttttacttacacttgtatgttgattTATCCATACTGAGGTTGGGGTTCTAAGTGTCGGcagacttttcttagcggatgtacaattattgcgaattgaattatggggcgTATCAGGCCCGAATGGAACATAATGAATTATATACTCGCAAACTCGATCAAAAACGAAggctgaggggcttacgttgcaGACTTCCTTTGTTTGTCTAATCGTTTGGACAGACATCCAAGATGGTGACGGGGATacccccaagggcataaggcgaggCTAAACTCAGTGGACAATGGACCTGATCGGACAGCTCAGAGCCTCTGCTCTTTTCTGTCCATAAaacgagggtgtgtcttttatgagTTTGAAACGCAGCCAAGGTCACAGGATGACTATACAATGTTAACTTCGGCTGTGAGTgcctggggggaaaaaaacaacatcTAAGACAGTTCATGGAAACATTCTATTGATATATTTGGTATAAAGGTGATAACAAAAGTGTCGTTTTGGGAATTTTGAAAATGTTCTTCTCAAATGGGGACGTCTATTGGAATTGTCTTTCTGGGCTCGGCGTCAGTTAAAGTGCAGTACCGCCAGTCTCCTATGGGTATATGGGATGGCGTACTTCCCAACCGGAACCCTGACATCAAAACGCGACGACTTCAAATCCGCCTCGATTTCCGTTTCATTGACATACGGGAACAGGAACCACAACAGTAGCTGGCTGGTGGCCCAAAACATTGAGAAAAATCTAACTTTCAAAGGGCTTGTGCCTGAGTCAGACCTCCGTGGATGGAAGTGGAGATTGCGTTCGAGATGGGTCCTGAGAGAATCTTACCGAACTCTGAGGAGGAGCTAGGTCATGAGCGGCCGTCGGACGCTGGGGTGCCTGAGGTGGgcggggagtggagtggagaggaggaggatgataatGGAGGTTACTATTACCAGCCACTAAACCAGGACCCTGATGGACTAAATGCTGCACCAGGGGACCATCCTGAGGATATGCCCCCAGTAGCAGAGCAACTGCAAGAAGTCCAGGAGAGAATAGAGCCCCCTCCCCCAGATAGTGATGAAGACCCAGAAGGAGCACACAGCAGCGCAGCCTCCATCCCCATGGATGAAGACCACGTGGAGCTGGTGAAGAGGACCATGGCAGCAGTGGCCCTGCCCTCTCTGGCCATCCCGGCCTGGGCTCAGGAGATCTCGGACGACCAGTGGAAGGACATGGTCCAGCAGACGCTCCAGACTCGCCAAAGCTCAGAAGGCCTGAGGCTAGAGCACAAATAAGACTGAATTGCCTCTTTCCCTCAGTCTGTCTTTAACTCTGTCCTGCATTTCACCAACACACTTAACCCAGGGGAGTCTGCACTGAGGTCCTCTCTGAGCAGGTGTTAGGTGTCTCAATTCTCAAGAGATTGTGAACTCCTCTACGTCCAATTCTCATTAGATGATATTTCTGATGAATATTTGTTTTTCAAAGGAGGCTCTTGGTACCTACTACACCTAACCTGCTGCTTAAGGTAATTTGTAGGGTTTGTGAAGGAGTTCGCATGAGTATAGTATATTTTGTCTCTCAGATCAGGCAAACTCTTACCGTTTCTGCTGGAGTACGTATTATGAGCCTCAATGACAGTTTGGCCTTGAGTACAGAAGCACTATTATATTCCCCTCCCCAATGCTTCCTGAGACATTCCAACATCAGATCacctttgtttgtttttaatgtgATACTTACTATTGGTTCTGATTACCATATTATAATACTATTAAATCAGTTTTTGTTGAACGTAA
>XM_021580327.2
aattagttaactaacgttagcctgcctagctggaacttctgaagaatGAAActgttttatttctacaatttccaaaagaataagcaaacaaaaacataattacttTTACGACACGTGTTTATGCCGTCATCTGCATTAGAGGCACAATTTCTAACcgttttacttacacttgtatgttgattTATCCATACTGAGGTTGGGGTTCTAAGTGTCGGcagacttttcttagcggatgtacaattattgcgaattgaattatggggcgTATCAGGCCCGAATGGAACATAATGAATTATATACTCGCAAACTCGATCAAAAACGAAggctgaggggcttacgttgcaGACTTCCTTTGTTTGTCTAATCGTTTGGACAGACATCCAAGATGGTGACGGGGATacccccaagggcataaggcgaggCTAAACTCAGTGGACAATGGACCTGATCGGACAGCTCAGAGCCTCTGCTCTTTTCTGTCCATAAaacgagggtgtgtcttttatgagTTTGAAACGCAGCCAAGGTCACAGGATGACTATACAATGTTAACTTCGGCTGTGAGTgcctggggggaaaaaaacaacatcTAAGACAGTTCATGGAAACATTCTATTGATATATTTGGTATAAAGGTGATAACAAAAGTGTCGTTTTGGGAATTTTGAAAATGTTCTTCTCAAATGGGGACGTCTATTGGAATTGTCTTTCTGGGCTCGGCGTCAGTTAAAGTGCAGTACCGCCAGTCTCCTATGGGTATATGGGATGGCGTACTTCCCAACCGGAACCCTGACATCAAAACGCGACGACTTCAAATCCGCCTCGATTTCCGTTTCATTGACATACGGGAACAGGAACCACAACAGTAGCTGGCTGGTGGCCCAAAACATTGAGAAAAATCTAACTTTCAAAGGGCTTGTGCCTGAGTCAGACCTCCGTGGATGGAAGTGGAGATTGCGTTCGAGATGGGTCCTGAGAGAATCTTACCGAACTCTGAGGAGGAGCTAGGTCATGAGCGGCCGTCGGACGCTGGGGTGCCTGAGGTGGgcggggagtggagtggagaggaggaggatgataatGGAGGTTACTATTACCAGCCACTAAACCAGGACCCTGATGGACTAAATGCTGCACCAGGGGACCATCCTGAGGATATGCCCCCAGTAGCAGAGCAACTGCAAGAAGTCCAGGAGAGAATAGAGTTGATGGGCTTGCATCTTCCCCAGCCCCCTCCCCCAGATAGTGATGAAGACCCAGAAGGAGCACACAGCAGCGCAGCCTCCATCCCCATGGATGAAGACCACGTGGAGCTGGTGAAGAGGACCATGGCAGCAGTGGCCCTGCCCTCTCTGGCCATCCCGGCCTGGGCTCAGGAGATCTCGGACGACCAGTGGAAGGACATGGTCCAGCAGACGCTCCAGACTCGCCAAAGCTCAGAAGGCCTGAGGCTAGAGCACAAATAAGACTGAATTGCCTCTTTCCCTCAGTCTGTCTTTAACTCTGTCCTGCATTTCACCAACACACTTAACCCAGGGGAGTCTGCACTGAGGTCCTCTCTGAGCAGGTGTTAGGTGTCTCAATTCTCAAGAGATTGTGAACTCCTCTACGTCCAATTCTCATTAGATGATATTTCTGATGAATATTTGTTTTTCAAAGGAGGCTCTTGGTACCTACTACACCTAACCTGCTGCTTAAGGTAATTTGTAGGGTTTGTGAAGGAGTTCGCATGAGTATAGTATATTTTGTCTCTCAGATCAGGCAAACTCTTACCGTTTCTGCTGGAGTACGTATTATGAGCCTCAATGACAGTTTGGCCTTGAGTACAGAAGCACTATTATATTCCCCTCCCCAATGCTTCCTGAGACATTCCAACATCAGATCacctttgtttgtttttaatgtgATACTTACTATTGGTTCTGATTACCATATTATAATACTATTAAATCAGTTTTTGTTGAACGTAA
>TU2103708
aattacttTTACGACACGTGTTTATGCCGTCATCTGCATTAGAGGCACAATTTCTAACcgttttacttacacttgtatgttgattTATCCATACTGAGGTTGGGGTTCTAAGTGTCGGcagacttttcttagcggatgtacaattattgcgaattgaattatggggcgTATCAGGCCCGAATGGAACATAATGAATTATATACTCGCAAACTCGATCAAAAACGAAggctgaggggcttacgttgcaGACTTCCTTTGTTTGTCTAATCGTTTGGACAGACATCCAAGATGGTG

Function

symbol description
mea1 Predicted to act upstream of or within spermatogenesis. Orthologous to human MEA1 (male-enhanced antigen 1).

NR:

description
arrestin domain-containing protein 3-like isoform X2

GO:

id name namespace
GO:0007283 spermatogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580328.2 False 2017 mRNA 0.45 4 17721666 17724320
XM_021580327.2 False 1970 mRNA 0.46 4 17721737 17724320
TU2103708 True 294 lncRNA 0.41 1 17721834 17722127

Neighbor

gene id symbol gene type direction distance location
LOC110502359 LOC106605853 coding upstream 17396 17672221 ~ 17704270 (+)
LOC110502358 LOC106605838 coding upstream 218015 17488998 ~ 17503651 (+)
LOC110502355 LOC106605823 coding upstream 239911 17452366 ~ 17481755 (+)
LOC118943817 NA coding upstream 252019 17467629 ~ 17469647 (+)
LOC110502352 LOC106605787 coding upstream 317870 17300197 ~ 17403796 (+)
LOC110503055 NA coding downstream 56007 17780327 ~ 17785281 (+)
LOC110502368 LOC106605956 coding downstream 166571 17890891 ~ 17925131 (+)
LOC110502370 NA coding downstream 219017 17943337 ~ 17947408 (+)
entpd6 enp6 coding downstream 329599 18053919 ~ 18065273 (+)
LOC118943922 LOC106606023 coding downstream 428011 18152331 ~ 18154303 (+)
G1837123 NA non-coding upstream 9645 17695495 ~ 17712021 (+)
G1837055 NA non-coding upstream 38701 17605675 ~ 17682965 (+)
G1836999 NA non-coding upstream 201441 17519938 ~ 17520225 (+)
G1836998 NA non-coding upstream 203076 17518388 ~ 17518590 (+)
G1836992 NA non-coding upstream 209649 17511827 ~ 17512017 (+)
G1837169 NA non-coding downstream 46247 17770567 ~ 17829727 (+)
G1837187 NA non-coding downstream 87596 17811916 ~ 17827556 (+)
G1837206 LOC106605930 non-coding downstream 122805 17847125 ~ 17850977 (+)
G1837240 NA non-coding downstream 157160 17881480 ~ 17882041 (+)
G1837281 NA non-coding downstream 215333 17939653 ~ 17939964 (+)
G1836916 NA other upstream 396306 17322174 ~ 17325360 (+)
G1836646 NA other upstream 608839 17112370 ~ 17112827 (+)
G1836321 NA other upstream 828327 16892235 ~ 16893339 (+)
LOC110502341 LOC106605225 other upstream 1184434 16534553 ~ 16537430 (+)
LOC110502340 kcng3 other upstream 1196840 16519036 ~ 16528382 (+)
LOC100136626 LOC106606089 other downstream 565560 18269654 ~ 18300278 (+)
G1838719 NA other downstream 1224197 18948517 ~ 18949003 (+)
G1839383 NA other downstream 1797944 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 2312803 20037044 ~ 20058237 (+)

Expression


Co-expression Network