LOC110503055


Basic Information

Item Value
gene id LOC110503055
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17780327 ~ 17785281 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039098.1
ATGTGCGGTAGCTAAAATGGCAAGAAACATTGAGTTTTGTCTGTTTTTTTGTAGAACCACCTGCAACTGGACACAAACATTTCAGATACATTTCCACCAGATCGAGAACCAAGACAGTATCGCCATGAGCAGTTGGACTTGTTGACTGATGCCAAGGCGGTGGTTACTAAGAAGAAAGGAGCATCTGTGAAACAGAAGATTGCAGCCAAGGCAGCACTGGTTCACACCTGCCTTGTCTGTCGGATGCAGACCCGAAGACATTCAAGCAGCACTTTGAGAGCAAGCATCCCATGTCTCCAATGGTCCCAGTACCGGTTGATGTGCAGACATAAGTgaccacacacactcaaatggACCTATAGCTGGGACACACGATGACCACGATTTGAATGCTTACAACTGACACGGAATGACGTGACCCCGAGAATGACTGGACATGGGCTGGATATTTGTGACAACATCCTAAAAGGGGTGCAGACGCACACTAGCACCCCATTTTATGTTTATTCCATAGCCAATCATATCTCTAGCTAACCCCTTATTCCACACTATGCCTTTTATGCCCTGTGGTCCCTCAACTTCTGACACTTTGTAACTCTCCATCTTATAAACCCACACTACCTTCACCCATTTTCCCTATGCTGCTTATTAACGTATTATTCTCCTGATTTGATAACATTTAGACTCAATAACATGTTTCAAGGTGCTTACACATGGGCGGTGGTAAGCGGCAATTGAACCACGAGAAAATCTGCCTACCGTGTGTAGAGACCAGTGATCCAGGTTGCTGTCAGCTTGAAAGTTGTCATTAAAACATTGTTTGATTGGTTGACAAGAGGAACTCTGCTCATTGGTCAACCATGCGCGGCGGCAGCTCAGGACTTTAGCTAATGACATCTTTTGGTGCCTCGGGCTCCGAGCCAGCTTCGCCTCTCATGGGAGCGAGCACCACAAACAGGGCCGCTTGCAAAACTGCTTGCATTTTGCCGCCAGCCGCTCTACCCCAATTGAAGTCTGTAAACTTTGCCGCTTACCACGGCCTGTTATCTTTTTGCGGTGTACTGTTTTTAATACCTTCAGACTGAATGCAGTGGTAAATGTGTTGCTCACAATTGACAGCCGCAACATGGACCTGTTAAATTGACAAGGGTGTTGATATAGTTGAGTTTAGGCATGGCTTCCTTGTTTTGAGTCTGTTAAGTTTGTTTCTCTTTGACCTAGTATTTTATATCAcgtttatttataaagcccttcttacatcagctgatatctcaaagtgctgtacagaaatccaccctaaaaccccaaacacaagcaatgcaggtgtagaagcacggtggctaggaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039098.1 True 1349 mRNA 0.45 4 17780327 17785281

Neighbor

gene id symbol gene type direction distance location
LOC110502364 mea1 coding upstream 56007 17721666 ~ 17724320 (+)
LOC110502359 LOC106605853 coding upstream 76057 17672221 ~ 17704270 (+)
LOC110502358 LOC106605838 coding upstream 276676 17488998 ~ 17503651 (+)
LOC110502355 LOC106605823 coding upstream 298572 17452366 ~ 17481755 (+)
LOC118943817 NA coding upstream 310680 17467629 ~ 17469647 (+)
LOC110502368 LOC106605956 coding downstream 105610 17890891 ~ 17925131 (+)
LOC110502370 NA coding downstream 158056 17943337 ~ 17947408 (+)
entpd6 enp6 coding downstream 268638 18053919 ~ 18065273 (+)
LOC118943922 LOC106606023 coding downstream 367050 18152331 ~ 18154303 (+)
LOC110502377 LOC106606050 coding downstream 403979 18177713 ~ 18241498 (+)
G1837123 NA non-coding upstream 68306 17695495 ~ 17712021 (+)
G1837055 NA non-coding upstream 97362 17605675 ~ 17682965 (+)
G1836999 NA non-coding upstream 260102 17519938 ~ 17520225 (+)
G1836998 NA non-coding upstream 261737 17518388 ~ 17518590 (+)
G1837187 NA non-coding downstream 26635 17811916 ~ 17827556 (+)
G1837206 LOC106605930 non-coding downstream 61844 17847125 ~ 17850977 (+)
G1837240 NA non-coding downstream 96199 17881480 ~ 17882041 (+)
G1837281 NA non-coding downstream 154372 17939653 ~ 17939964 (+)
G1837313 NA non-coding downstream 209848 17995129 ~ 17995387 (+)
G1836916 NA other upstream 454967 17322174 ~ 17325360 (+)
G1836646 NA other upstream 667500 17112370 ~ 17112827 (+)
G1836321 NA other upstream 886988 16892235 ~ 16893339 (+)
LOC110502341 LOC106605225 other upstream 1243095 16534553 ~ 16537430 (+)
LOC110502340 kcng3 other upstream 1255501 16519036 ~ 16528382 (+)
LOC100136626 LOC106606089 other downstream 504599 18269654 ~ 18300278 (+)
G1838719 NA other downstream 1163236 18948517 ~ 18949003 (+)
G1839383 NA other downstream 1736983 19522264 ~ 19523012 (+)
LOC110502420 slc18a2 other downstream 2251842 20037044 ~ 20058237 (+)

Expression


Co-expression Network