LOC110502372 (LOC106605977)


Basic Information

Item Value
gene id LOC110502372
gene name LOC106605977
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17963757 ~ 17967763 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580340.2
ccaaacctatagtttgttaacaagaaatgtgtggagtggttgaaaaatgagttttaatgactccaacttaagtgtatgtaaacttcagaccccaACGGTACGTTTCAGGAAAATTTgatttttagcatttatagcaatgTTTTTCAACTTTACTGCAGGGTTGGAATGTATTTCGCAGAAAactgaggttgtggtggcagctgcagagaagtatttgggtatgcgagacttgacatcagaagagttacagggtgtgttaatTGGTGATGTCCCATCTATTTCAGGTTGGCATGAGGTAggactaaatatatttaaatagtggagtaggatggtgttatttttatttgattgattTTTTAACATTTGTTTTGTGATTTtagtgttagatggtagggtatttatatttttttatttatatttttttaaccaaagtataagggagttgtactccagtctagtaggtggcggtaatgcaacacgTTGGAATTCCAACTTCCGTTAACCTcatcaaagaagaagaagacccgGAAGTACTTTTCTATTGTTGTTGACGAGATGCTGATGTCATCTTGTTGAATGAAATAGTTAGCCAGTGAACTACAATGTGACAGCATCTACTGCGTAATCATAACGTTATATTTGTCTAAATGTAGGCTTAAAAATCTCAGGGAAAATGTCACGTTTAAAGGATCAACTGGCCACCGTCATGAGGCTTTTAGTAAATGCAGCTGTGGTGGAAATAAGTAAATTGTTGGACGAGTGCACGAGTCAAAACGTTTACACCGAGTCACAGAGACAGTGCACTGGCCCTGGGACTGAGCTGTCTGCCACCATGAAGAGATTGTGCAAAGAGGCCATGCAAAAAATCATTAGTCTCATAGATGAGGATACAGCTTCTCTGCGTCTGcaagtgtctgtgtgtcagagagataatCAGGTTCTGAAGGAGAATCTCCAGGTGATGGATGGGGATCTGAGGTCGACTGGAGGGCTTGGAGAGGTGGATGcagaggacaggaagacccaAGGAAAAGACCTGACTAAATTTGTGCACTTGTCTGAAGTCAACAGTGGCACGTCTGCAGAGACGGAGGAGGAATGTGCTGAATGGATCACGTTGAAGGAGGGTACCCTGCAACAGGACacccagacaggacacacacatgaGCACACAGATGGAGAATCCAGGACAGAGGATGGGGAGGATGCTACTATTGAACACAACTTAGAGGAGGAGATTACTACACCACTCTCACCAGCAAAGGCCCAAGATGACCAAGACTTAGAGCCTGCTGTGCCCACAGACATATCCAATGATGCTAAGATGGCGGCTCCCACAGTACGTCAAATGAGACTGCGTGCAGTGAGACGCACCCAGGGCCAGAAATCTGTCAAAGGAGACAAATGTTTAAGCTGTGTACAGTGTGGGAAGGCTTTTAGTAAACTAAGTAACCTGAAAGCCCACCAGGTTGTCCACACAGGTGAGAGGCCATTTAAGTGTACGCATTGTGGGAAGGGCTTTACAGCAAAGTGCAGTCTCAAAGTACACCACGTTATAGTCCACAAAAGGGAGAAGCGATTCAAGTGCACATACTGCGGGAAGATATTTGGCACCCAGAGCCAGCTTAAAGAACACCAGGTGGTTTTCAAAGGCGAGAAAGAGAAGGTATTAAGATGTACTTTGTGTGCTAAGGCTTTCCCTGCCAAATGTAGCCTCAAAGCTCACAGAATAGCTgtacacagaggagagaagagattcAAGTGCTCTCAGTGTGGGAAGGTTTTTGCCAGGCAGAGAGATATGATAGTACACCAGGGTGTACACACAGGAGAAAGACCATTTAAGTGTACAGCGTGTGGGAAGTCTTTTACAGCTAGACGAAGTTTAAATGTACACGTGCTGACTGTACACAAAGGAGAGCGACCTTTCAGCTGTGACATATGTGGCAATAGATTCAGCCAGAGAAGTGGCCTCAAGGCTCACCGAAGGACCCACACCGGAGAGAAGCCCTACATGTGTGACCAATGCGGAAAAGGCTTCAGCCTGAAAAGTGCCCTTAATACCCACCACGTAGTTCACACTGGTGAGAAAGCATTTAGCTGTGAGATCTGTGGCAAATGTTTTAGTTTAGCGCCTAACCTCCGCAGACACCAGCAGACTCACTCTGGTGTTAAAGCGTTCACCTGTGACATATGCCAGAAGAGTTTCACTCAAGCTAGTCATCTCAAAGTCCACCAGCGCATTCACACAGGTGAGAAAACGTTTGTATGTGACGTATGTGGAAAGAGCTTCAACCAAAAGAGTTCGCTGATGATCCACCAGAAGATACACAGTGGGGACAAACCCTATGACTGCTTAGAGTGTGGAAAATGCTACCGGTCTGCAAACTATCTGAAAAGGCACCaggtgacacacacagagaaaaaaaCTCACTCTTGTGAAGAATGCGGAAAGAATTTCCACACCGCTACCAATCTCAAAACTCATCGTCGGGTCCACACAGGCAAGAAGACATTTACCTGTGATATATGTGGACAAGGGTACAGTTCCCTAAGTTACTATAACGCTCACCGGCTCATTCACACTGAGGGGAAACCATTCAGCTGCACCATGTGTGAGAAGCAGTTCGCCAAACAGCGTTTCCTCAATCTTCACCTACGCACTCACACTGGAGAAAGGCCACATACCTGTGACCTGTGTGGGAAGTGCTTCAGTTTTGCACAGAACCTTGTTCGCCACAAACGCGTGCACACTGGGGAGAAACCGTTTCTCTGCATTTTGTGTGGGAAGACTTTCAGCCAAGCGAACAATCTCAAGGCTCACCGGCAAGTGCACACTGGGGAAAAACCATACAACTGCTCCAAATGCAGGAAGAGCTTCTCCTGTATGAGAAATCTGAAGGAACACAAGTGTATTGAAGTTCAAGAACAAATAGTGGAAGTGACTGTTGGGAGACTCTCACAAGTACTGTAATAATGTATGAATAATGGCACAATACCAACACACCTGACTAACTGGAGCTGCTTAGCAAAAAATGCTATGAATGTTGCAAATCCATGTAGCAATTATAATTCTAGAATATCTAGCTATTACACAAGCTGCATAAATGACAATGCAAGCCTTCTACTGTACGTCCATGGTCCTTCCATGGATTCCCCCTGATGTCATATTAGGATGGGTTGAAATTTGCATCACTGTTGCTATCATCATGTCTCTCAGGTAACCTGGGCCTAGTCTAATGATAAGTACTACTATGTTATTATATGTATGTAATATGTATTTAGCATTTCCATATTTCAACCCACATGCACCAGTAATATTGCAGCATGAGTATTTTACAGTATGTTGCAATACATTTGCTCATTTTACAACTCAGGTAACAAGAGGTGTTTGACTTGTGTTTTGTCCCTGTAAATCTGAATTAAATAAATCTATTTAGAatcaaattata

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580340.2 True 3452 mRNA 0.44 4 17963757 17967763

Neighbor

gene id symbol gene type direction distance location
LOC110502369 apmap coding downstream 7275 17948121 ~ 17956482 (-)
LOC110502367 LOC106605930 coding downstream 81919 17842636 ~ 17881838 (-)
LOC110502366 LOC106605925 coding downstream 135058 17815233 ~ 17828699 (-)
LOC110502365 LOC106605918 coding downstream 156579 17792830 ~ 17807178 (-)
LOC110502361 LOC106605890 coding downstream 182242 17725263 ~ 17781515 (-)
LOC110502373 LOC106605981 coding upstream 29513 17997276 ~ 17999926 (-)
LOC110502375 LOC106605994 coding upstream 116178 18083941 ~ 18127862 (-)
LOC110502376 LOC106606039 coding upstream 179776 18147539 ~ 18151845 (-)
LOC110502378 NA coding upstream 274935 18242698 ~ 18255850 (-)
LOC110502380 syu coding upstream 343143 18310906 ~ 18327329 (-)
G1838166 NA non-coding downstream 22436 17941100 ~ 17941321 (-)
G1838165 NA non-coding downstream 22917 17940563 ~ 17940840 (-)
G1838048 NA non-coding downstream 243721 17662654 ~ 17720036 (-)
G1837942 NA non-coding downstream 382508 17520967 ~ 17581249 (-)
G1838191 NA non-coding upstream 20844 17988607 ~ 17988939 (-)
G1838196 NA non-coding upstream 27371 17995134 ~ 17995487 (-)
G1838199 NA non-coding upstream 33960 18001723 ~ 18002084 (-)
G1838202 NA non-coding upstream 38293 18006056 ~ 18006277 (-)
G1838254 NA non-coding upstream 170958 18138721 ~ 18170916 (-)
G1837980 NA other downstream 244553 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 538437 17420323 ~ 17425430 (-)
G1835092 NA other downstream 2216022 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 2292577 15666203 ~ 15671223 (-)
LOC110502394 LOC106606249 other upstream 881934 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 1144279 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 1317633 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2975544 20943307 ~ 20943615 (-)
G1841959 NA other upstream 3377751 21345514 ~ 21371799 (-)

Expression


Co-expression Network