LOC110502373 (LOC106605981)


Basic Information

Item Value
gene id LOC110502373
gene name LOC106605981
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 17997276 ~ 17999926 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580342.2
CCTCATCACCCAAGCTGCAGGGAAAAGAGAAGTATAGAGCTTTACAATGACAACCATGATAGGAAGAGAGGATGGCGCGGATGAAAAGCCCAAAGTCAAGATGCTGGCGCCTGCATTTGGGATCGATAAATCACGACTTCATGGATCTGGGTTTAGGTCTAAAGGCTTTGCCATCACGGACCTACTGGGTCTTGAAACGGATCTCCAGCCTCGCCCATCCGGACCTTATGGAGTAGGAGGACACGGGGATGTTCAGAGCGCTGGGATGGGATTCCCTTTCGCTGGAGGATCCTTGCCTCTTGGTCTGGGGTTCCTGTGCAGTTTGGCGGCTCAGCAACCTCCGGGGGGGCCCTGCTTCCTACCGAGTCACATACCCCTCCTTCAGTCCAGGACGGAGAGCCATTTCATGCAGAATATGGAGCAACAAAGAGACGCCTACTCTGATGACGAGTGTCTCTCTGGTGAACGAAACGATTCGAAAAACTCAGGGAACTCAcagaagagaaagaaaaggaggcaCAGAACTGTGTTCACTTCTCATCAACTGGAGGAGCTGGAAAAGGCATTCCATGAGGCACATTACCCAGATGTGTATGCCAGGGAAATGTTAGCAATGAAGACAGAATTGCCTGAGGACAGAATACAGGTTTGGTTTCAGAATCGTCGGGCCAAGTGGAGGAAGCGTGAGAAGTGCTGGGGACGCAGCAGTGTGATGGCAGAGTATGGGCTCTACGGTGCCATGGTCCGCCACTCCATCCCTCTGCCAGAATCAATCATCAACTCCGCCAAAAGCGGGATGATGGGCTCCTGTGCTCCCTGGCTTCTAGGAATGCACAAGAAGTCCATGGATATAGTAAAGAAGTCCCCAGGAATGCCAGAGTTTACCCACTCGGATACTAACTCCGAGGAAACTAAAGGGAAAGACAACGACATGTCCTGGCCAAATCGCTCTCGTGGTATAGACGACAGCGAGGACATGGCAATAGACCTATCCAGCACCTCTAAGCAGGACAGCAGCAAGAGCACTTTGAAGTCATCGTCGCCCCAAAGGGATCCCATTCGCAACAGTGATTCAGACGATGAAAGCTAAATTAATCCCGGTTGCAGACAGTGATTCAGACGATGAAAGCTAAATGAATCCCGGTTGCAGACAGTGAGCTTGAACATTTGCGTGGAAATTATGCTCACCTGGAAGACAATTATTTTCCAAAGATGCGCAACATTCCCATCACATTAGGGGTGTACAGTGTACTTGTCTTATTTCTTAATAATTGTATTTGGACATATGTTTTATAAAGttgtttggttttaaatataagaAAATATTTCATGTTTTATTCAACTTTTGTTTGATTTGTGTGTTGTTGAAATGATATTTcaaaaaagaagagagaggaccAAGGAGAGGATATATCACCTCTTCTCCTGCAGAAACGTGTTACATGATAAATCCAAATGCAATTTCTCTAAAAAACAATTAGTGAAAATGTACAAACCTCATGCCTACATTTCATTTCATGTTTTTGAAAGGTGGTGGTTAGGGTGTAAACCCCACCACCTGCATTTGATATAAAatataaactaaaatacacagaTTATCAAATGGCACAATTATGAAGCACTTTAGTTGTGTTGATACTGAATGTCATTCAGAGGTCAATTTCACCGCAATGACAGCAATAATAACAACACTGTAATAACAGTAATATCAGGAAAACAGTACCTGGATAAAGAAATAAAAGTATTTTTTTGAAA
>XM_021580341.2
CCACCTCATCACCCAAGCTGCAGGGAAAAGAGAAGTATAGAGCTTTACAATGACAACCATGATAGGAAGAGAGGATGGCGCGGATGAAAAGCCCAAAGTCAAGATGCTGGCGCCTGCATTTGGGATCGATAAATCACGACTTCATGGATCTGGGTTTAGGTCTAAAGGCTTTGCCATCACGGACCTACTGGGTCTTGAAACGGATCTCCAGCCTCGCCCATCCGGACCTTATGGAGTAGGAGGACACGGGGATGTTCAGAGCGCTGGGATGGGATTCCCTTTCGCTGGAGGATCCTTGCCTCTTGGTCTGGGGTTCCTGTGCAGTTTGGCGGCTCAGCAACCTCCGGGGGGGCCCTGCTTCCTACCGAGTCACATACCCCTCCTTCAGTCCAGGACGGAGAGCCATTTCATGCAGAATATGGAGCAACAAAGAGACGCCTACTCTGATGACGAGTGTCTCTCTGGTGAACGAAACGATTCGAAAAACTCAGGGAACTCAcagaagagaaagaaaaggaggcaCAGAACTGTGTTCACTTCTCATCAACTGGAGGAGCTGGAAAAGGCATTCCATGAGGCACATTACCCAGATGTGTATGCCAGGGAAATGTTAGCAATGAAGACAGAATTGCCTGAGGACAGAATACAGGTTTGGTTTCAGAATCGTCGGGCCAAGTGGAGGAAGCGTGAGAAGTGCTGGGGACGCAGCAGTGTGATGGCAGAGTATGGGCTCTACGGTGCCATGGTCCGCCACTCCATCCCTCTGCCAGAATCAATCATCAACTCCGCCAAAAGCGGGATGATGGGCTCCTGTGCTCCCTGGCTTCTAGGTGAGCCAGCAGGAATGCACAAGAAGTCCATGGATATAGTAAAGAAGTCCCCAGGAATGCCAGAGTTTACCCACTCGGATACTAACTCCGAGGAAACTAAAGGGAAAGACAACGACATGTCCTGGCCAAATCGCTCTCGTGGTATAGACGACAGCGAGGACATGGCAATAGACCTATCCAGCACCTCTAAGCAGGACAGCAGCAAGAGCACTTTGAAGTCATCGTCGCCCCAAAGGGATCCCATTCGCAACAGTGATTCAGACGATGAAAGCTAAATTAATCCCGGTTGCAGACAGTGATTCAGACGATGAAAGCTAAATGAATCCCGGTTGCAGACAGTGAGCTTGAACATTTGCGTGGAAATTATGCTCACCTGGAAGACAATTATTTTCCAAAGATGCGCAACATTCCCATCACATTAGGGGTGTACAGTGTACTTGTCTTATTTCTTAATAATTGTATTTGGACATATGTTTTATAAAGttgtttggttttaaatataagaAAATATTTCATGTTTTATTCAACTTTTGTTTGATTTGTGTGTTGTTGAAATGATATTTcaaaaaagaagagagaggaccAAGGAGAGGATATATCACCTCTTCTCCTGCAGAAACGTGTTACATGATAAATCCAAATGCAATTTCTCTAAAAAACAATTAGTGAAAATGTACAAACCTCATGCCTACATTTCATTTCATGTTTTTGAAAGGTGGTGGTTAGGGTGTAAACCCCACCACCTGCATTTGATATAAAatataaactaaaatacacagaTTATCAAATGGCACAATTATGAAGCACTTTAGTTGTGTTGATACTGAATGTCATTCAGAGGTCAATTTCACCGCAATGACAGCAATAATAACAACACTGTAATAACAGTAATATCAGGAAAACAGTACCTGGATAAAGAAATAAAAGTATTTTTTTGAAA

Function

NR:

description
visual system homeobox 1-like isoform X1

GO:

id name namespace
GO:0050896 response to stimulus biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0007601 visual perception biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09335 VSX1; visual system homeobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580342.2 False 1755 mRNA 0.45 5 17997276 17999923
XM_021580341.2 True 1770 mRNA 0.45 5 17997276 17999926

Neighbor

gene id symbol gene type direction distance location
LOC110502372 LOC106605977 coding downstream 29513 17963757 ~ 17967763 (-)
LOC110502369 apmap coding downstream 40794 17948121 ~ 17956482 (-)
LOC110502367 LOC106605930 coding downstream 115438 17842636 ~ 17881838 (-)
LOC110502366 LOC106605925 coding downstream 168577 17815233 ~ 17828699 (-)
LOC110502365 LOC106605918 coding downstream 190098 17792830 ~ 17807178 (-)
LOC110502375 LOC106605994 coding upstream 84015 18083941 ~ 18127862 (-)
LOC110502376 LOC106606039 coding upstream 147613 18147539 ~ 18151845 (-)
LOC110502378 NA coding upstream 242772 18242698 ~ 18255850 (-)
LOC110502380 syu coding upstream 310980 18310906 ~ 18327329 (-)
LOC110502384 LOC106606127 coding upstream 374002 18373928 ~ 18434140 (-)
G1838196 NA non-coding downstream 1789 17995134 ~ 17995487 (-)
G1838191 NA non-coding downstream 8337 17988607 ~ 17988939 (-)
G1838168 NA non-coding downstream 10295 17949453 ~ 17986981 (-)
G1838166 NA non-coding downstream 55955 17941100 ~ 17941321 (-)
G1838165 NA non-coding downstream 56436 17940563 ~ 17940840 (-)
G1838199 NA non-coding upstream 1797 18001723 ~ 18002084 (-)
G1838202 NA non-coding upstream 6130 18006056 ~ 18006277 (-)
G1838254 NA non-coding upstream 138795 18138721 ~ 18170916 (-)
G1838299 LOC106606050 non-coding upstream 189640 18189566 ~ 18189923 (-)
G1838322 NA non-coding upstream 213846 18213772 ~ 18217411 (-)
LOC110502361 LOC106605890 other downstream 266764 17725263 ~ 17781515 (-)
G1837980 NA other downstream 278072 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 571956 17420323 ~ 17425430 (-)
G1835092 NA other downstream 2249541 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 2326096 15666203 ~ 15671223 (-)
LOC110502394 LOC106606249 other upstream 849771 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 1112116 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 1285470 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2943381 20943307 ~ 20943615 (-)
G1841959 NA other upstream 3345588 21345514 ~ 21371799 (-)

Expression


Co-expression Network