LOC110502376 (LOC106606039)


Basic Information

Item Value
gene id LOC110502376
gene name LOC106606039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18147539 ~ 18151845 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580346.2
TATTTGTGCGTAAATGAAATCAGGTGTGAGTAGAGTAGTGGTGGAGAGGATGCGTGTGCGCGTTTATGATTAATGTAACATTAGTCTAGGTAGCCTCCTATCTACTGGGTTTTTAAATCACAGAGAATAAATTATACATAGCTTAGTTTAGAGAGAGCAAGACCGAAAATGAATGAGACTGAATATCATCAAGTCCCACTTTCTCAATATGGTTTCGAGCAGCAATTTGACGAGCGAGGCGCTATCGAATGGATGCAAGAAAACTGGAGCAAGGCCTTTGTGTTCTGTGGCCTGTATGCAGCGCTGGTCTTTGGAGGCCAACATTTCATGAAGGAGAGGCCTAAACTTAATCTGCGCAGACCACTGGTGCTGTGGTCACTCAGCCTGGCCATCTTCAGTATCATTGGAGCAATTCGAACAGGATGGTACATGCTGTATGTCCTCTCAACCAGCGGTTTCAGACAGTCTATATGTGACCAGAGCTTCTACAATGGACCAGTGAGCAAGTTCTGGGCCTATGCCTTTGTCCTGAGCAAAGCCCCTGAACTGGGCGACACGGCATTCATTGTGCTCCGTAAGCAGCGGCTGATCTTCCTGCACTGGTACCACCACATTACCGTGCTGCTCTACTCCTGGTACTCCTACAAGGATCAAGTGGCTGGAGGCGGCTGGTTCATGACCATGAACTACTCTGTTCACGCACTCATGTATAGCTACTACGCGGTGCGGGCAGCTGGCTACCGGGTGCCACGCCCCTTTGCCGTGGTCATCACCACCTTCCAAATCGCTCAGATGGCCATGGGGCTGACGGTCAGTTGGCTGGTCTACCACTGGATGCAGGAGGGGGACTGCCACTCCTACCTGAACAACATTATGTGGAGCTCCCTCATGTACCTCAGCTAcctgctcctcttctcctccttcttctacCAGACCTACATGAAAGGCAAAGGTGGCAAGAGCTCCAAGATGGACTAAATTGTGGGGGGAGGGATTGCTACGTTGCCTGACGGGGCCCAGTTTTAAGCTTTTCGCGACAATGGCAAGTCTATCCATTCCCTATACACCTTATGCCATTAGTTTACCAGCAGTGAACTATTTTCCTGAACCTGTCAAGTGACCTCCACTGTCTGAAGTGTTTACAGAAATGTTTTCATGAAGATGTTGCTCTTTGTATCATAGTTCCGATCTGTGCTTTTCAAAAGGCACATGTAATGGCACCCCCTGCGAGTTTCTGTTCAGGCTGGTGCGACTGGTTTTCATACACATTTTCATGGTTCTCTTCTGAGCTTGTCAATGGACCAATAAGAGGGCTGGCAGCTGGTACGCCCATACCCAACCCCAATATTTGGCATTTCTCATTACCTTGGATCAGCCTACACCAGCATATTTCACTGTGACTGTCTCGTAGGTGTGGGCCTTTGGTTTCTCTGAACTGGTTTCCAAAACTCACCCTGTGAGATATTTGGTCACTTTAAATGGTGTAGTTGTGTTCTAACTCAAAGGAATCTTCCTGAAAGCAGCTATTTGTCGGGTGttcacaaatgtatttatttatttgatcgTATGATGGCAGCTGGAATAGTGCCGGAAAAGTCAAACTTTCCCATGGTCTCTCACTGCACAATTATTCAATTTTTGCACCAGAGATGACTGGTTTATTTTTGTGCTCTTAGGATGCAAGCAATGCCATGTTGCTTTTTTTCTGATGCATCACAGGAGTGGTTTTTGGTTTCACTGTCACTTTCTGGTGAGAATGCTGTGTCTCCTGAAAGGAATTCCTAACTAAAAAAAAAAGCCTGTTCTGCTGTGAAAATGTCAGGTATTTTTGTCCTCATTCTAAAGTTGTTTTTTAGAAAGGGAATGTTGAGCTTTGTTTTTATGTAGCTGGAAACAGACTTGGTATCTTGACATGCATATATTTGTTGTCTTGCTGATAATTCAGTTCTGTTTATTTAATGAATAATATTTATTGGTCTTTACAGGTTAAAGGGAGTATGAATGTATTTtgttccggggggggggggggtggctgaGCAAGATACTTTTATTATGCTCAGCGTTAAACACCATTTCCACTAACTAAACTTGCCAGTGGAATTTGAATGCCATGTTTACATTTTGTTAAAATTTGCAGCAGAAAAAGCTAAATGTATTTTAAGATGTGCCAAATGATGCTGAACAACCCTATGTCAAGATTATCTATGTATTGCCATATTGAGCAGATGGCCATCAGCCGATGAATTCTGTGATCCTGATCCGACGTGTTTGACATTGACATGTACTACGTGTTATAAATGAAAACGGACCAACTAAAGCCTTCTAATATTTGAAATGTACTATAATAAAGCACTCTTTTGAAATC

Function

NR:

description
elongation of very long chain fatty acids protein 6-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K10203 ELOVL6; elongation of very long chain fatty acids protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580346.2 True 2365 mRNA 0.44 4 18147539 18151845

Neighbor

gene id symbol gene type direction distance location
LOC110502375 LOC106605994 coding downstream 19677 18083941 ~ 18127862 (-)
LOC110502373 LOC106605981 coding downstream 147613 17997276 ~ 17999926 (-)
LOC110502372 LOC106605977 coding downstream 179776 17963757 ~ 17967763 (-)
LOC110502369 apmap coding downstream 191057 17948121 ~ 17956482 (-)
LOC110502367 LOC106605930 coding downstream 265701 17842636 ~ 17881838 (-)
LOC110502378 NA coding upstream 90853 18242698 ~ 18255850 (-)
LOC110502380 syu coding upstream 159061 18310906 ~ 18327329 (-)
LOC110502384 LOC106606127 coding upstream 222083 18373928 ~ 18434140 (-)
LOC110503086 LOC106606152 coding upstream 282707 18434552 ~ 18502963 (-)
LOC110502386 opn4m1a1 coding upstream 375521 18527366 ~ 18601530 (-)
G1838202 NA non-coding downstream 141262 18006056 ~ 18006277 (-)
G1838199 NA non-coding downstream 145455 18001723 ~ 18002084 (-)
G1838196 NA non-coding downstream 152052 17995134 ~ 17995487 (-)
G1838191 NA non-coding downstream 158600 17988607 ~ 17988939 (-)
G1838168 NA non-coding downstream 160558 17949453 ~ 17986981 (-)
G1838299 LOC106606050 non-coding upstream 37721 18189566 ~ 18189923 (-)
G1838322 NA non-coding upstream 61927 18213772 ~ 18217411 (-)
G1838416 NA non-coding upstream 314651 18466496 ~ 18483789 (-)
LOC110502361 LOC106605890 other downstream 417027 17725263 ~ 17781515 (-)
G1837980 NA other downstream 428335 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 722219 17420323 ~ 17425430 (-)
G1835092 NA other downstream 2399804 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 2476359 15666203 ~ 15671223 (-)
LOC110502394 LOC106606249 other upstream 697852 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 960197 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 1133551 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2791462 20943307 ~ 20943615 (-)
G1841959 NA other upstream 3193669 21345514 ~ 21371799 (-)

Expression


Co-expression Network