LOC110502380 (syu)


Basic Information

Item Value
gene id LOC110502380
gene name syu
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18310906 ~ 18327329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580361.2
GTGTCCCAATCTGCCTCAGCAGCACAGATCAGTCcagcccctctctcgctctctgtctctctctctctcgctctctctctcataagaGCAGCGCATGCACATACACTCGCGCACACACCCACCTACCACGCAGAGACACAACCTCAGgcgcgctcacacacacgcagacacacacgcaggcacagaAGGGCACACTGAGCAACCTCATCTACCAGCTCCAAGACACAGCCAGAGCCAGCTAAAAGACACAGCCCTGTAACAGCAGACCAGCATGGATTACCTGAAGAAGGGATTCTCCATGGCCAAGGAAGGTGCGGTGGCTGCAGCGGAGAAGACCAAGGCAGGGGTGGAGGGGGCAGCTGCCAAAACCAAGGAGGGGGTAATGTATGTGGggaacaagacaaaggaCGGAATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACAACTGACCAAGCCAATATTGTCGGGGACGCAACGGTCGCCGGAGCCAATGAGCTGTCTCAGCAAACAGTGGAAGGGATGGAGAACGCAGCGGTGAACTCCGgattggtgaaccagAGTGACTTCTCTCAGGGAGCTGAGCAGGCAGGACAGTAgGAGTGTTGGTTCTGACATCAGTGATCTGCAGCAGCCTCCCTCGTCCTCTCTTCCGGAAGAAATGCCGTGTTAGATGCTGCTCGTCCTGCGTCTCCCATTGCCAACTCTTGTTTCTGGGGAGGGCTACCAACCCCggtgtgcccccccccctctgatGCTTTCTTTGTGTGACTCGATGGAAACGAAACATTCTGAAAGATCCTCCCCGTCCACAACATCCCTCACCATACAAGCTACACATTCCTGCCCCGTATACCTTTACCGTCCATATCCCTCACCCCTGACTATTACCCACCTTACcactgtgacccccccccccccattcccttTGCCCACCACTCCAGGTCATCCTACACGataccacacatacacatacacaaacatacagttcacacatgcatacacaccagGACATTGAGAAAGCCTTCGCAGAACAATACTTTTAGTCCTCTCCGAGAGGGTTGGCAATGTGAGACTTCCTGGTAGTGTGCACTCTGTCAGATAATGTAACACCAGTACTTATACAGTAGATGTACTCATGTCAGTGTATGCGTTGGTCAGGTTTGTTGATGAAGATGTGTTTTGAAGTGAGTTAATTTAACCCTGTGTGTCTTAATGCCTGACGCCCCCTCATCCTTATTGTGACAGAACAGAGGGTGACACTTTATTTAGATAGCCCGGATTTTCCATCTGTAGACGCTCTACAGATGGCCATGCGATCAGCAAACTATCTTGCTAAGGTTactgctagggttaggtttagaatatgggttagggttagtagatagttagttgaaatgttactgatagtctatAGATGGTCCATCTGTCGATACTCTacagactatccaaataaagtgttgccAAACAGGGTTCAGGGTCAGAGTGAAGGTGAAGTTATGGATTAACAGCTCCCCCATCACATGACCCAGGCCGTCTCGCACCTGCAGTGGGGCTGCAGTACAGACAGGCTACTCTGTATCTCATAAACAGATACTGTCGGTGGTGTTTCCTGCTGTCTCTCTGCCCCGAACCCTGGGTCTGCTATATAGAGAAATCAAAGAGAGAAAGGTGACGTTAGGAGTTTCCAACGGCCTTTATCTTGTGTTTGACTAGTTGCAATGAAAGGCaatgaaaaaaatgaaatgtaTGTATGTGATCAGATTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTATGTGATCAGACTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTAGGCCTACCTCAGACGTGAATACGAGTAGTCGACAGGTCAAATACCTTGACATCCCGTACATCTGGTCTTCGAGGAAAACAATTTCTCCACCCCCCTCATCATGCTTTCACTCTGATCCTTCATTCAAGCGACGCCTACAGGTCACTCAACAGTGTACCCTGccccctcccctgtctgtctgctttcgGTGACTTGAACAGGTCTTTTAAACCATCACGGTGTTTGTCCTTTGAAGCCGTCTCAAACGAGACTGCGTGTTGCCTTACTAACATCCAGACACATAGACTCAGACACACATTCATTGGGACTAAAAACACAACCTCAGACAAATTCAAATTCACCTATTGCACGCACGTATCCAAGAATTAGAGGttacatacacactgacacacacgttCATCCAAAAATGCAAAATATATATGTTGGCATCAAAGCAGACTGCTTCTTTTATAAACAGTACTACTGAActgaaataaatacaattttatttaaaTCCAAAA
>XM_036959996.1
CTTGTTAAGGGTGTCCCAATCTGCCTCAGCAGCACAGATCAGTCcagcccctctctcgctctctgtctctctctctctcgctctctctctcataagaGCAGCGCATGCACATACACTCGCGCACACACCCACCTACCACGCAGAGACACAACCTCAGgcgcgctcacacacacgcagacacacacgcaggcacagaAGGGCACACTGAGCAACCTCATCTACCAGCTCCAAGACACAGCCAGAGCCAGCTAAAAGACACAGCCCTGTAACAGCAGACCAGCATGGATTACCTGAAGAAGGGATTCTCCATGGCCAAGGAAGGTGCGGTGGCTGCAGCGGAGAAGACCAAGGCAGGGGTGGAGGGGGCAGCTGCCAAAACCAAGGAGGGGGTAATGTATGTGGggaacaagacaaaggaCGGAATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACAACTGACCAAGCCAATATTGTCGGGGACGCAACGGTCGCCGGAGCCAATGAGCTGTCTCAGCAAACAGTGGAAGGGATGGAGAACGCAGCGGTGAACTCCGgattggtgaaccagGAACAGGAAGAAGCTGTAGCTCTGGACGTTAAGCCTGAGGTGGCTGGTTCTGGTTCTGAAGGGGTGTGTGGTGGATAGTTTCgtagaatgaatgaatgaatgaatgaatgcatgGCATGATGCTTGCTGCCTTTATTGTCTTCTTCTCATTGAAGCACCATGCCTTTATATGCAGTAATACGCTGTCAACTTGGGTGCTGGCTGGTACAGTAGTCTATAGGAGTGATTGGGTGCTGGCAGGTAGGCAACAGTAGTGATTGGGTGCTGGCAGGTAGGCAGCAGTGGTGATTGGGTGCTGGCAGGTAGGCAGCAGTGGTGATTGGGTGCTGGCAGGTAGGCAGCAGTGGTGATTGGGTGCTGGTTGGTTTGAGGGTGGACAGGTGGGCCTGCGACCAGTCAGCTCCAAATGAGCTAATATTTCCTCAAGCTGGGAATTTATGTTCACATTGAGAAAACATTTCCAATCACAAATCACACAATGAATTCAAAGGAATGTAGACCATGTAATTGTTTTCTATGCATATACATGAAATATACATGAAATAACACAACACATGTCAAGGTAGAGTATGAATACCTTTATTAAAAGATTACATTGATTAAGATTCATTTAAAAGCTGCCCTTCAGTATTGTGTTGTGGTCGTTTGTACTGCAGTGAAGATACAGCAGCTGTGTCCCCGCGATATTACAGTCGGAGGCATCATGCCCAGAGGGGGCACAGGGGCACAGGGGCACGTGCTCCCTCAGATTTGtcttgtttaaaaatatatatttacaattttt
>TU2105092
CAGTCcagcccctctctcgctctctgtctctctctctctcgctctctctctcataagaGCAGCGCATGCACATACACTCGCGCACACACCCACCTACCACGCAGAGACACAACCTCAGgcgcgctcacacacacgcagacacacacgcaggcacagaAGGGCACACTGAGCAACCTCATCTACCAGCTCCAAGACACAGCCAGAGCCAGCTAAAAGACACAGCCCTGTAACAGCAGACCAGCATGGATTACCTGAAGAAGGGATTCTCCATGGCCAAGGAAGGTGCGGTGGCTGCAGCGGAGAAGACCAAGGCAGGGGTGGAGGGGGCAGCTGCCAAAACCAAGGAGGGGGTAATGTATGTGGggaacaagacaaaggaCGGAATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACAACTGACCAAGCCAATATTGTCGGGGACGCAACGGTCGCCGGAGCCAATGAGCTGTCTCAGCAAACAGTGGAAGGGATGGAGAACGCAGCGGTGAACTCCGgattggtgaaccagAGTGACTTCTCTCAGGGAGCTGAGCAGGCAGGACAGTAgGAGTGTTGGTTCTGACATCAGTGATCTGCAGCAGCCTCCCTCGTCCTCTCTTCCGGAAGAAATGCCGTGTTAGATGCTGCTCGTCCTGCGTCTCCCATTGCCAACTCTTGTTTCTGGGGAGGGCTACCAACCCCggtgtgcccccccccctctgatGCTTTCTTTGTGTGACTCGATGGAAACGAAACATTCTGAAAGATCCTCCCCGTCCACAACATCCCTCACCATACAAGCTACACATTCCTGCCCCGTATACCTTTACCGTCCATATCCCTCACCCCTGACTATTACCCACCTTACcactgtgacccccccccccccattcccttTGCCCACCACTCCAGGTCATCCTACACGataccacacatacacatacacaaacatacagttcacacatgcatacacaccagGACATTGAGAAAGCCTTCGCAGAACAATACTTTTAGTCCTCTCCGAGAGGGTTGGCAATGTGAGACTTCCTGGTAGTGTGCACTCTGTCAGATAATGTAACACCAGTACTTATACAGTAGATGTACTCATGTCAGTGTATGCGTTGGTCAGGTTTGTTGATGAAGATGTGTTTTGAAGTGAGTTAATTTAACCCTGTGTGTCTTAATGCCTGACGCCCCCTCATCCTTATTGTGACAGAACAGAGGGTGACACTTTATTTAGATAGCCCGGATTTTCCATCTGTAGACGCTCTACAGATGGCCATGCGATCAGCAAACTATCTTGCTAAGGTTactgctagggttaggtttagaatatgggttagggttagtagatagttagttgaaatgttactgatagtctatAGATGGTCCATCTGTCGATACTCTacagactatccaaataaagtgttgccAAACAGGGTTCAGGGTCAGAGTGAAGGTGAAGTTATGGATTAACAGCTCCCCCATCACATGACCCAGGCCGTCTCGCACCTGCAGTGGGGCTGCAGTACAGACAGGCTACTCTGTATCTCATAAACAGATACTGTCGGTGGTGTTTCCTGCTGTCTCTCTGCCCCGAACCCTGGGTCTGCTATATAGAGAAATCAAAGAGAGAAAGGTGACGTTAGGAGTTTCCAACGGCCTTTATCTTGTGTTTGACTAGTTGCAATGAAAGGCaatgaaaaaaatgaaatgtaTGTATGTGATCAGATTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTATGTGATCAGACTAAAGATATAGTATAATGGTCCCACTTCCAGATTCAGTATGTAGGCCTACCTCAGACGTGAATACGAGTAGTCGACAGGTCAAATACCTTGACATCCCGTACATCTGGTCTTCGAGGAAAACAATTTCTCCACCCCCCTCATCATGCTTTCACTCTGATCCTTCATTCAAGCGACGCCTACAGGTCACTCAACAGTGTACCCTGccccctcccctgtctgtctgctttcgGTGACTTGAACAGGTCTTTTAAACCATCACGGTGTTTGTCCTTTGAAGCCGTCTCAAACGAGACTGCGTGTTGCCTTACTAACATCCAGACACATAGACTCAGACACACATTCATTGGGACTAAAAACACAACCTCAGACAAATTCAAATTCACCTATTGCACGCACGTATCCAAGAATTAGAGGttacatacacactgacacacacg

Function

NR:

description
Synuclein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580361.2 False 2363 mRNA 0.48 5 18310906 18327319
XM_036959996.1 False 1356 mRNA 0.50 4 18316871 18327329
TU2105092 True 2229 lncRNA 0.49 5 18311011 18327290

Neighbor

gene id symbol gene type direction distance location
LOC110502378 NA coding downstream 55056 18242698 ~ 18255850 (-)
LOC110502376 LOC106606039 coding downstream 159061 18147539 ~ 18151845 (-)
LOC110502375 LOC106605994 coding downstream 183044 18083941 ~ 18127862 (-)
LOC110502373 LOC106605981 coding downstream 310980 17997276 ~ 17999926 (-)
LOC110502372 LOC106605977 coding downstream 343143 17963757 ~ 17967763 (-)
LOC110502384 LOC106606127 coding upstream 46599 18373928 ~ 18434140 (-)
LOC110503086 LOC106606152 coding upstream 107223 18434552 ~ 18502963 (-)
LOC110502386 opn4m1a1 coding upstream 200037 18527366 ~ 18601530 (-)
LOC110502387 LOC106606172 coding upstream 296980 18624309 ~ 18738296 (-)
myoz1a LOC106606220 coding upstream 412967 18740296 ~ 18760542 (-)
G1838322 NA non-coding downstream 93495 18213772 ~ 18217411 (-)
G1838299 LOC106606050 non-coding downstream 120983 18189566 ~ 18189923 (-)
G1838254 NA non-coding downstream 139990 18138721 ~ 18170916 (-)
G1838202 NA non-coding downstream 304629 18006056 ~ 18006277 (-)
G1838199 NA non-coding downstream 308822 18001723 ~ 18002084 (-)
G1838416 NA non-coding upstream 139167 18466496 ~ 18483789 (-)
G1838521 NA non-coding upstream 290970 18618299 ~ 18619145 (-)
G1838628 NA non-coding upstream 476748 18804077 ~ 18805565 (-)
G1838709 NA non-coding upstream 613958 18941287 ~ 18941544 (-)
LOC110502361 LOC106605890 other downstream 580394 17725263 ~ 17781515 (-)
G1837980 NA other downstream 591702 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 885586 17420323 ~ 17425430 (-)
G1835092 NA other downstream 2563171 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 2639726 15666203 ~ 15671223 (-)
LOC110502394 LOC106606249 other upstream 522368 18849389 ~ 18854222 (-)
si:dkey-51a16.9 LOC106576688 other upstream 784713 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 958067 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2615978 20943307 ~ 20943615 (-)
G1841959 NA other upstream 3018185 21345514 ~ 21371799 (-)

Expression


Co-expression Network