LOC110502390 (LOC106606232)


Basic Information

Item Value
gene id LOC110502390
gene name LOC106606232
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18777758 ~ 18787759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580378.2
ctctcccctctctctctctttatttcagcTCCTCCAGCCTGCAACCCTATCAGCATTGCTCATACTCAgagtgtgtgtgggcatgtgtgGGTGTCAAtggggagagtgtgtgtatgtgtgcccagGTGCCAGAGTACGGGCTGAGAGAAATCAGCTCCAGGACATTATAGCTGAAGGAGAGTGGACAGAGCCCTCTGATGGGGCCCTGACAACTATGGAGCAAACGCATTGAGGGCCCCTCCGCCCCAGAAAGACAAAAAAGACAGACAAACGGACAGAAACACAAAAAAGGGGAAGGTATCACACAATAATGGTGTCAGAAGAAGTTGTAATCACCTTGTCCGGTGGAGCACCATGGGGCTTTCGTCTCCAGGGGGGCGTGGAGCACCAGAAACCACTTCAGGTGGCCAAGGTGCGTAAGCGCAGTAAGGCGTGCAAAGCAGGACTGCGGGAGGGTGATGAGCTGGTGTCCATCAACGACCAGCCATGTGGAGGTCTGTCCCACGCCCAGGCCATGACCATAATCGACAGCTCCCCAGGAATACTACACATCCAGGTCAAGAGGGCGCCGGCAGGCTTCCAGTCCGTGGTGCTATTGACCCGCGCCCCATCACCCCGTATCGACAAAGAGTACCGAGCCACCCTGCGCGCCATGTCCCCCTCCTCCAGACTGCACCACACAGCCACTGTCATGGAGGTCCCCCATGGCAGGTCCTCCCTCCTATCCCCCATGGTGCGCAGATGCCTCACCTCGCCCCCAGGCAGCGAGGCCTACTACGGGGAGACAGACAGTGACGCAGAAGTGGCGGCCAACGAGAGGCAGAGGAGGCAGAAGCACAGAAATCCCAGCAACTTATCCGGAAAAGCCTTCGGTAGAGCATCCCCGGAGGGAGGGGAGACCTCAGAGTTTAGCGGCTATGACAGTGCCCCAGATGCCCGGGTCTACCCAGGCATACTGGATggcagaggagggggggagggccTGCCAGGGGTGGCCCGCAGGGAGGTGATCTACCAGCCCCCTCCAGGGATGTGGTCCTCCCAGACCTCCACAGAGACATCCTCCATCATCTCCTCGGCTGAGGAccaggtctcagggcaggacagagTGATGGAGGAGGACAGAACCTTCCAGGAGCCATCCAACGTTGTCCCACTAGTGTCACCCGAGAGGGCAAAGGAGGCCATGCAGCTGAGCTCCCGTAGGCAGATGGTGCCCATGGTGGGGCCTATAGACACCCCTCTGGACGAGGAGCTCAGTGTCACCTACATGGACAAGGCCAAGCAAGCCAAACTGAACCGGGGTGACACGGTTCAAGACAAAAAGGTGAAGGAGGCCAGAACCAAGTGCCGCTCTATCGCCTCCCTTCTGACAGACGCCCCCAACCCCAACTCCAAGGGCGTGCTGATGTTCAAGAAGCGCAGGCAGCGCTCCAAGAAGTACACGTTGACCAGCTTCGGCAGCGTGGACGAGGACATGCAGCACAATTCCCCAGAGGAAGATGGTCTCTTCCCAGGAAGCGAGTCGGAGTTTGATGAGGATGGCTTCTCGGCCGCCCCCGACACCACCTGGGACAGTGACTACCTGGATGCGCTGGAGAAGAGGGCGACCGCAGGTGGAGAGCGAGGGGACGGGGCAGAAGATGCCCCCAGTCCCGGCCTGAGTGACATCTCTGGGAAGGGCGCCCAGCTGTTTGAGCAGCAGAGGAAGAGGGCGGCCGAGCACGCCAAGAAGGTGGCTGCCGCCCAACCTCAGATAAGGACCCAATCACCGAACCAACTACAGATCCAGGAGCAGCCTCAGCCATATGTACAGAGCCAGCCCCAGCCAAAAACACAACCACAGATGTACCAGTCTCAGCAGCCTATGGCACCACCGCCCCTTGTAGCCTTCCAGGAGGAGGCTCGGTCTGTGGCAGAGGGGCCTATGGCACCGGCCCCAGCTGCTCCTACTGCCTACAGCATGGCTAATGGAGACGTCGCCTACTCTCCAGTGAGCACGGCTGGCATGGTGATGTCACCCTTGACTGTGGCACCCAACCCAATCACCACCCAAGTGTCAATCTTAACCACTCACATACCTCCACCCCAAACACCGCTGCCAGAACTCTCCTCCAGCTCTGTTCTCAACAGAACAGCCCGCCCCTTCAACCCAGGGTTCGTGACCAACCGAGCCGCCACCGCTCCTGTTGTGTTCCGCCCCGTCGTCACCAAAAGTGCCCCGCGCCCGGCGACCTCTGTGTCTATTGTAGGACCTCCCTTCTCCACCTCATCAGAGCCGCCTCCAAGTGGTAATCCCGCCTTCTTCTCTCCCCCGTCCTCTGTGTCCAGAGGACCCTTCTCCACCTCAGCCTCAGCACTGGCGACTCATCCTCGTCCTGCCTTCTCTGTGGAGAACCTGGCAGAACCACCCATGCCCTCTGTTCCACAGGCTTCCTTCACAGCCATACCTCCACCCCCAGCACAATTCTCAGGTGGCCCCATACCCCCACCTCCAGGATCATTTGCCAATGTACCCTCAATTCCACCCTCATCACCATTCTCAGGTGCACCCATACCCcaagccccagtctcagtggctCAATCAGCCCCAGCTCCAGTGTCTTTTGACCCCATACACCAACCTCAAGTTTCTGTTGCCCAGATGCCCCAAGCTTCTGTCTCAGTTGTCCCACTCCCAAACCCCACAACTCCAACACCTATACTCAGATCCCCCATGTCCAAGGTCCCACCTGCCCCTGGTGGTCGTACCGGCATCCTCCTGGAGGCTCGTCGGTGCAGCGGCAGGAGGCCCATGTTTCGAGTACCTGCTGAGAAGAAGAACTCTCCCAACCCTGACCTGCTGAACATGGTGCAGAACCTGGATGACAGGCCCCGCTACAGAAGCTACTCAGAGAGTGTGATGGGCTTTGAGTCTGGTGCAGAAGAAGACCAGGGTGCTGAAGTCTGCCGGGGAAGGATGCCTCCACTGGTGGCCCCCAAACCTAGGGTCATCCACGAGGCCCCTCAGATCCCCCAGGAAGAAGGCAAGGGGGCTCAGCTGTTTGCCCGCAGGCAGAGCCGCATGGACCGGTATGTGGTGGACACTCCACAGGAGACCGCCTACCGGCAGGAGGTCTCCCACCCAGGGGTCGGGCCCCAGGATGCTCCCAACCTCGATATCAACTCACAGTGGAAGTTATCCCCCAACATCCGCGCCCCCCCGCCTATCGGCTACAACCCTCTGCTGGCCCCTTCCTGTCCTGTGGGGCCACAGAGAGATACCAGCAGGTCTGCCAGGGGGGACTGGGGAGGTAAAGGAGGGATCGCCTTTCAGAGGGAGGGAATCAAAGCTCTGGATTTCATGAGAAGGCAGCCTTACCAGCTCAACTCAGCTATGTTCGGGGGTAGTGTTGCCAAGCTGTCGGCGATTCCCTCCTACCAAGACCAGAGGCAGCAGCAGGGAGGGTACACTACTATGGTGGGTAGCACCATGACCCCTCCCAGACAGATCCCAGTCAAAGCGGCCCGTGTGTATGAGATCAAACGCTTCTCCACACCCACGCCCATGTCAGCCCCGAGCCTGGCCCCCACCGTAATCGCTCCTCGCTCAGCCACAACGCTGGGAGAGCGCTTGACCCGCTCCGATATGATCTCCCCaacccctgctcctctctccccaccccctgcccCTTTCTTTGCCCCAGCTCCTGTCTCTGCCTCACCTTCCGTCCTTGCTCCTACCTATTCAGGGGGCCTGCCTGGACTGCCCAGAATCAATGTTACCCCTGTCCGcaaccccatccccatcccagcaCCCTATCCTGGAGTGTCCTACAGTGGGCTCCAAGGAGCAAAGCAGTTTCAGAGTGCCCCTGAGCTTAGTTTCCTTGCTAACCTTCCCACTCCCCTAAGGGCGAATGCCATGCAGGCGCCAAAACCCCGCTTCATCGCCACCAAGGTGGGCGTCCAGCCGTGTGTGTGGAGACCAGGTGCCATGTGATCAGGTGGGAGTGGGAGACTTTGTCTGTCACTAAGAACTGGACACATCTCAGCCATAAAACAAATATCTGCAAAACAATAAAGTAATAAGGTGGTCAAATACTGATCAATGAGCTTGTTCAGTACCTAACAAAAATGTTTTTAcgagtgccttgcaaaagtattcatccccccatttttcctattttgttgcattacaacctgtaatttgaatatattttttatttggattttgtaatggacatacacaaaatagtccaaattggt

Function

NR:

description
synaptopodin 2-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580378.2 True 4248 mRNA 0.58 4 18777758 18787759

Neighbor

gene id symbol gene type direction distance location
myoz1a LOC106606220 coding downstream 17216 18740296 ~ 18760542 (-)
LOC110502387 LOC106606172 coding downstream 39462 18624309 ~ 18738296 (-)
LOC110502386 opn4m1a1 coding downstream 176228 18527366 ~ 18601530 (-)
LOC110503086 LOC106606152 coding downstream 274795 18434552 ~ 18502963 (-)
LOC110502384 LOC106606127 coding downstream 343618 18373928 ~ 18434140 (-)
LOC110502393 LOC106606239 coding upstream 35825 18823584 ~ 18828968 (-)
LOC110502394 LOC106606249 coding upstream 61630 18849389 ~ 18854222 (-)
LOC110502395 LOC106606259 coding upstream 67198 18854957 ~ 18860989 (-)
LOC110502397 LOC106608657 coding upstream 119323 18907082 ~ 18910807 (-)
LOC110502401 LOC106606294 coding upstream 295615 19083345 ~ 19092148 (-)
G1838521 NA non-coding downstream 158613 18618299 ~ 18619145 (-)
G1838416 NA non-coding downstream 293969 18466496 ~ 18483789 (-)
LOC110502380 syu non-coding downstream 450468 18310906 ~ 18327329 (-)
G1838322 NA non-coding downstream 560347 18213772 ~ 18217411 (-)
G1838628 NA non-coding upstream 16318 18804077 ~ 18805565 (-)
G1838709 NA non-coding upstream 153528 18941287 ~ 18941544 (-)
G1838711 LOC100380853 non-coding upstream 154522 18942281 ~ 18943024 (-)
G1838716 NA non-coding upstream 158984 18946743 ~ 18946960 (-)
G1838720 NA non-coding upstream 160994 18948753 ~ 18948980 (-)
LOC110502361 LOC106605890 other downstream 1047246 17725263 ~ 17781515 (-)
G1837980 NA other downstream 1058554 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 1352438 17420323 ~ 17425430 (-)
G1835092 NA other downstream 3030023 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 3106578 15666203 ~ 15671223 (-)
si:dkey-51a16.9 LOC106576688 other upstream 324283 19111958 ~ 19145332 (-)
LOC110502408 LOC106606370 other upstream 497637 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2155548 20943307 ~ 20943615 (-)
G1841959 NA other upstream 2557755 21345514 ~ 21371799 (-)

Expression


Co-expression Network