LOC110502393 (LOC106606239)


Basic Information

Item Value
gene id LOC110502393
gene name LOC106606239
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18823584 ~ 18828968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580384.2
CATTGACTGCTACAATTGTATGACTTCTGAGAAGTATAAAGAACACGTTAAATTTAGGTGacctgattttttattttttttgctttgaAACTATTTCTACTTCTACTATACAAATAATAACAATGAATACTACAGTGTATGTTAGCTGTACCTACTCCTACTCTATCCCTCACCATAGGAGCGACAGTGGGAAGGTAGCAGTAATGAAGCAGACCGTCATAGAGCAGACCATCAACAGTCCCCAAACAACCTCAACCCCTCTCAGGCTGACATCTCACCTTGCTCAGCTTCCAAAGAGGACCTCAACACCTCCCTGGGGATGTCAGACCTCAGGACCAGGTTGTCACATGAAGAACTCACCTTCAGGTCACCTGGGCAGCAGCCCCGGCCGACACAGCCCCTCCAGCCGACCCCTGGAGGTCCATAGCTTCTCTACTCCACTCAGACCCAAGTGGACCTCCACTCTGCTATCCTCCCTCTCGCCTTCCTACATCCCCAATTTGCGCCCCTccagacagagacggacagagcTGAGAATGGTCGCAGGTGAAGTTTATCAATCACgtgaagagggaggggaaacgtATCTAAATGTAGGCCCTTCAGTGGGCGACCCCCAGGTTCGCTCCAACCCTGCGCTCCACACCATGTCCCCCCACCAGGCCAACTCCTGGCCCTGTGCCATTTCCAGCTCCCTGCCCCACTCCCCAGACCGACACTCTTCGAGCTGGGACCCTGATAAGGAGTATCAGACCCTCCTGGACTACACCTACCCCCTGAGGCCAGGTAGGGGGGTGGGTGGATGGGATACCTCAGAGCTTGGGGGTGGGTCTCTCATTCAGACAGACCCAGGCCTCCTGGATTCGGGGATAGAACTGGACCGTCTCTGCAGCTCCATCAGCCTATCAGCTTTGGACTTTTCCCTAAGTGTCACGGCAGGGGTGGGCACTAGTAGGGCCAGGGAGATGGGGATGCTGGGTATAGGTCAGAGGTCATCTGAGCTGCGTGGGTTCTCACACTCCAAGTCCTCTGATGGTCGCCTCTCCACTAGccccttcttctctgcagaccctaTTGGTCTATCAGTAGAGAGTCTGGACTATAGTGGAAGTGGTGGTGGTCTGAACCATTCACATCGTAGCGGGGGAGGTCACTACCGCCAACATggcagctcctcctcctcttccaccacgTTCATCCGCAGAACCAGTATCCTTCCCCGGCCAGGGTACCTCGGAGAGTGGGATTTGGACGAGGAGTTCTGGCCTCTCCCGGAGCAGTTGGAGGAGCTCCAGGGTTTGTCCCAGCAAGTCAGGGAGGTGACGGCCCAACTCAGCCAATCTGTCACAGCCTATTGGGACTCCATGGAGAGGGGGAACACCTCCGTCCAGTCCTGCATGACCATGGCAGAGAAacaggaggcagaggaggagagagaagaacaggAGCAGAATAAGGAggaagaaagggaggaagagaaggagaaagaggaagagtcCATTTCTGAAGCACTTCAACACTTCAATAAAGCGAGCAATTGTGGGGAGTCCTTCCAGGCAGCCAGAGGCCCTGGTTTTAGGATGGAGGCTGGGGTAGTAAGCAGGGGAGTGAGAATGGCCAGTCTGAGGGAGGCGGCAGGCATGGTGGGTGGACTAACCCTGCCTGAGTTCCAGACGGGGAGCCAGGGGGAGCAGGAGCAAAGGGAGTCCCTCATGCAGCACATCCAGACCTTCTGTTCTAACCTGGAGGTGCTCATCCAATGGCTGTACACGGTGGTGGAGAGGATGGAGGTACTGGAGCCGCCCACTGTGGACATCAAGAGTGTCAAGTCATCCCTGGCGGATTATAAGAGGTTTCAGAGAGAAGTGAACACACACCAGCCCCTGACCACCTCTATTCTGCAAACTGGAGGGCTTCTCCTGGGTTGTTTGACCTCCACTTCTTCCGTTCTGAAAGAGACCCTCTGTCTTATTGAGAGGCAGTCCAAGGCGCTGGAGACCCACTCAGAGCACCACTTCTCCTCTATTATCTCGGTCATGGACAGACTGACCCAGCCCAGGGAGTCcagtgggagagaggagacccAGGCAGGAGACCCGGATAGGATGGCGGTCCAGAAGACCGCTCAGTGAAGGCTCTACGGTTATGTAGAGATTGGGATATGATTACTCTATAGCACCCTCTAGTGACATGTTATCAGGTTTATTATTTATCATCAGAAGAAGTGCTCTAGTCGCACAAACTGGAATAATATAATGGTGCAGATAAAGTTCAGAATTACATAATTTCACGTGTACAACATCTAATGACCTGTATCACTAAAATAatgtatttgggtgtttttggagcctttgttTGTGGTTTTCCACAGCCCCCATACTGCAGAGCATGCAACGAGGAAGTCTATTGCGGGTGGTTTCTCAAAACAAGGTGAAATCGCCCAAAAAGTGTCTGCACCCTTCTGTAGCATGCAATTTATATCACAAATAGACATTTGGTTAAAAAATAGTGAAACGATCCTTGCTGTGTTGAAAAGAGACCACTTGACTGTTGTCATGCTTTTGATTCATTATTTTGTTAAGTGCTTTTTAAATttaaagtgccttcagaa
>XM_036960763.1
TTTGTTTTACATCGCAACAACTATTTACAGActgaaatgtacattttttttggtTTCTGTCAATTTCAGCGGTTGCCTTGGACACATGACGCATCTCTGGGCCTTTCCTTGTAACCATGGAGCTGGGAGTTGACAGGGCCTTCCCAGCATACGTCTCTCCGATGGAGTCCAAGGGCTGCAGTGGGCGACAGAAGACCAGGATTCCAGAGTTTATCCAGAGGAGTGGGACAGGCAGAACAACCCAACATTCCAAAGACAAaggcgaggagaggaggaaaggggacagcGGTGGTTCCAGGAAGAATGCTGACATGGCATCCACCTCCGGGTATATGAGTGACAGGAGGCAGTACACTATAAGGACCCCGGTGGTCACCACCACGGAGCAGCAGCAGGCCTCCATCCTAAAGAAATCATACGTACAGGAGCACCCAGAAAACGAGCGACAGTGGGAAGGTAGCAGTAATGAAGCAGACCGTCATAGAGCAGACCATCAACAGTCCCCAAACAACCTCAACCCCTCTCAGGCTGACATCTCACCTTGCTCAGCTTCCAAAGAGGACCTCAACACCTCCCTGGGGATGTCAGACCTCAGGACCAGGTTGTCACATGAAGAACTCACCTTCAGGTCACCTGGGCAGCAGCCCCGGCCGACACAGCCCCTCCAGCCGACCCCTGGAGGTCCATAGCTTCTCTACTCCACTCAGACCCAAGTGGACCTCCACTCTGCTATCCTCCCTCTCGCCTTCCTACATCCCCAATTTGCGCCCCTccagacagagacggacagagcTGAGAATGGTCGCAGGTGAAGTTTATCAATCACgtgaagagggaggggaaacgtATCTAAATGTAGGCCCTTCAGTGGGCGACCCCCAGGTTCGCTCCAACCCTGCGCTCCACACCATGTCCCCCCACCAGGCCAACTCCTGGCCCTGTGCCATTTCCAGCTCCCTGCCCCACTCCCCAGACCGACACTCTTCGAGCTGGGACCCTGATAAGGAGTATCAGACCCTCCTGGACTACACCTACCCCCTGAGGCCAGGTAGGGGGGTGGGTGGATGGGATACCTCAGAGCTTGGGGGTGGGTCTCTCATTCAGACAGACCCAGGCCTCCTGGATTCGGGGATAGAACTGGACCGTCTCTGCAGCTCCATCAGCCTATCAGCTTTGGACTTTTCCCTAAGTGTCACGGCAGGGGTGGGCACTAGTAGGGCCAGGGAGATGGGGATGCTGGGTATAGGTCAGAGGTCATCTGAGCTGCGTGGGTTCTCACACTCCAAGTCCTCTGATGGTCGCCTCTCCACTAGccccttcttctctgcagaccctaTTGGTCTATCAGTAGAGAGTCTGGACTATAGTGGAAGTGGTGGTGGTCTGAACCATTCACATCGTAGCGGGGGAGGTCACTACCGCCAACATggcagctcctcctcctcttccaccacgTTCATCCGCAGAACCAGTATCCTTCCCCGGCCAGGGTACCTCGGAGAGTGGGATTTGGACGAGGAGTTCTGGCCTCTCCCGGAGCAGTTGGAGGAGCTCCAGGGTTTGTCCCAGCAAGTCAGGGAGGTGACGGCCCAACTCAGCCAATCTGTCACAGCCTATTGGGACTCCATGGAGAGGGGGAACACCTCCGTCCAGTCCTGCATGACCATGGCAGAGAAacaggaggcagaggaggagagagaagaacaggAGCAGAATAAGGAggaagaaagggaggaagagaaggagaaagaggaagagtcCATTTCTGAAGCACTTCAACACTTCAATAAAGCGAGCAATTGTGGGGAGTCCTTCCAGGCAGCCAGAGGCCCTGGTTTTAGGATGGAGGCTGGGGTAGTAAGCAGGGGAGTGAGAATGGCCAGTCTGAGGGAGGCGGCAGGCATGGTGGGTGGACTAACCCTGCCTGAGTTCCAGACGGGGAGCCAGGGGGAGCAGGAGCAAAGGGAGTCCCTCATGCAGCACATCCAGACCTTCTGTTCTAACCTGGAGGTGCTCATCCAATGGCTGTACACGGTGGTGGAGAGGATGGAGGTACTGGAGCCGCCCACTGTGGACATCAAGAGTGTCAAGTCATCCCTGGCGGATTATAAGAGGTTTCAGAGAGAAGTGAACACACACCAGCCCCTGACCACCTCTATTCTGCAAACTGGAGGGCTTCTCCTGGGTTGTTTGACCTCCACTTCTTCCGTTCTGAAAGAGACCCTCTGTCTTATTGAGAGGCAGTCCAAGGCGCTGGAGACCCACTCAGAGCACCACTTCTCCTCTATTATCTCGGTCATGGACAGACTGACCCAGCCCAGGGAGTCcagtgggagagaggagacccAGGCAGGAGACCCGGATAGGATGGCGGTCCAGAAGACCGCTCAGTGAAGGCTCTACGGTTATGTAGAGATTGGGATATGATTACTCTATAGCACCCTCTAGTGACATGTTATCAGGTTTATTATTTATCATCAGAAGAAGTGCTCTAGTCGCACAAACTGGAATAATATAATGGTGCAGATAAAGTTCAGAATTACATAATTTCACGTGTACAACATCTAATGACCTGTATCACTAAAATAatgtatttgggtgtttttggagcctttgttTGTGGTTTTCCACAGCCCCCATACTGCAGAGCATGCAACGAGGAAGTCTATTGCGGGTGGTTTCTCAAAACAAGGTGAAATCGCCCAAAAAGTGTCTGCACCCTTCTGTAGCATGCAATTTATATCACAAATAGACATTTGGTTAAAAAATAGTGAAACGATCCTTGCTGTGTTGAAAAGAGACCACTTGACTGTTGTCATGCTTTTGATTCATTATTTTGTTAAGTGCTTTTTAAATttaaagtgccttcagaa

Function

NR:

description
centrosomal protein of 68 kDa-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580384.2 False 2611 mRNA 0.52 5 18823584 18828494
XM_036960763.1 True 2873 mRNA 0.53 6 18823584 18828968

Neighbor

gene id symbol gene type direction distance location
LOC110502390 LOC106606232 coding downstream 35825 18777758 ~ 18787759 (-)
myoz1a LOC106606220 coding downstream 63042 18740296 ~ 18760542 (-)
LOC110502387 LOC106606172 coding downstream 85288 18624309 ~ 18738296 (-)
LOC110502386 opn4m1a1 coding downstream 222054 18527366 ~ 18601530 (-)
LOC110503086 LOC106606152 coding downstream 320621 18434552 ~ 18502963 (-)
LOC110502394 LOC106606249 coding upstream 20421 18849389 ~ 18854222 (-)
LOC110502395 LOC106606259 coding upstream 25989 18854957 ~ 18860989 (-)
LOC110502397 LOC106608657 coding upstream 78114 18907082 ~ 18910807 (-)
LOC110502401 LOC106606294 coding upstream 254406 19083345 ~ 19092148 (-)
si:dkey-51a16.9 LOC106576688 coding upstream 282990 19111958 ~ 19145332 (-)
G1838628 NA non-coding downstream 18019 18804077 ~ 18805565 (-)
G1838521 NA non-coding downstream 204439 18618299 ~ 18619145 (-)
G1838416 NA non-coding downstream 339795 18466496 ~ 18483789 (-)
LOC110502384 LOC106606127 non-coding downstream 448626 18373928 ~ 18434140 (-)
LOC110502380 syu non-coding downstream 496294 18310906 ~ 18327329 (-)
G1838709 NA non-coding upstream 112319 18941287 ~ 18941544 (-)
G1838711 LOC100380853 non-coding upstream 113313 18942281 ~ 18943024 (-)
G1838716 NA non-coding upstream 117775 18946743 ~ 18946960 (-)
G1838720 NA non-coding upstream 119785 18948753 ~ 18948980 (-)
G1838778 NA non-coding upstream 122528 18951496 ~ 19016128 (-)
LOC110502361 LOC106605890 other downstream 1093072 17725263 ~ 17781515 (-)
G1837980 NA other downstream 1104380 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 1398264 17420323 ~ 17425430 (-)
G1835092 NA other downstream 3075849 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 3152404 15666203 ~ 15671223 (-)
LOC110502408 LOC106606370 other upstream 456428 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2114339 20943307 ~ 20943615 (-)
G1841959 NA other upstream 2516546 21345514 ~ 21371799 (-)

Expression


Co-expression Network