LOC110502394 (LOC106606249)


Basic Information

Item Value
gene id LOC110502394
gene name LOC106606249
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 18849389 ~ 18854222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580385.2
GCAGAGTTCATTTTGTCGCAATATGATGACGTTCCAGACGTCATTAATGCTTGCCAAAACACCATAAAGTTGTGTAAATGCCTGTTTGACCTTTCTTATCAAGCCAGTGTATCTAGCTAACGGCAATGAACATGTCTCTACTACGCGTATGTGCTTCTACATCGATTTTTCGTGCGACCAAAGGGTTATTCATGGAGTCTGCTTTTACAGGATGCTTGCGGACAGCAAGTGGAGCAGCTAAGGACAAGGAGCCACTGCGCAAGGCCAAAACCCCCCAGGGCCGCTTTGACATGAATGATGAGAAGATAAAGGATCCCCTTGAAAAGTTCCCTGATGATGTGAACCCAGCCACTAAGGAGCAGGGGGGGCCCCGAGGCCCAGAACCCACGCGCTACGGGGACTGGGAGAGGAAGGGCCGCTGTGTCGACTTCTAGTTTCCATTCCTGGTATATTACACATGCGATGTGGACATACCTTATCTATAACTTatgcatccatgtctgaggattgTTGTGCAAGAGACCAGGATTAGTACACCATACTGAATCAGTCTGGACTATTTCCCCATGAACCATACAATCTGATTTGTAGTTTCACATGTATACACATGTAGTCTGTAGAACAGTCTCACTTACTTTTTATGGTGCAATACTCACTTTGCACACTATTGTCTTTGTTGAGATGTATGATGAGGATGAGACATGATGACCTAGTGAACAATAAAGGCTGCTGAGGGAGGATGGCTCTTAATGGCTGAAATGAAGTGAATGGaatgacaaccccccccccccccaaaaaaagctgtttgattccatttactccattctgAACAATTTTATGAGCGATTGTCATGCAAGTTTATTGCTTCCTCTACAgagatgtcaatgttgtgaataaATGCAATGTAAAAAATTCTGGAGATTACTCTGGCATGTTTTTACTTTTTGATTATTGCTCATTATATTGAGTCATCGacaatgcctctgatctggtcaGTATTCCTACATTAGCCCCTGTCTCTTTTCACTCTACTCTCGTTCTCTTTCCTGCCTCTTGGTTGTTTATTGATTCTATGTGTACTGTACAATGAAGGGAAGCGCTCCTGCTCAGCGACACTCATCAGGCAACCACCTGGCATCCTGAGCGGCTCTTCTACGTCTTGTCTGACTGGCACACCCTTACCCTGTAacatgtactgaacaaaaatataaatgcaaaaat
>TU2105357
TTGCCAAAACACCATAAAGTTGTGTAAATGCCTGTTTGACCTTTCTTATCAAGCCAGTGTATCTAGCTAACGGCAATGAACATGTCTCTACTACGCGTATGTGCTTCTACATCGATTTTTCGTGCGACCAAAGGGTTATTCATGGAGTCTGCTTTTACAGGATGCTTGCGGACAGCAAGTGGAGCAGCTAAGGACAAGGAGCCACTGCGCAAGGCCAAAACCCCCCAGGGCCGCTTTGACATGAATGATGAGAAGATAAAGGATCCCCTTGAAAAGTTCCCTGATGATGTGAACCCAGCCACTAAGGAGCAGGGGGGGCCCCGAGGCCCAGAACCCACGCGCTACGGGGACTGGGAGAGGAAGGGCCGCTGTGTCGACTTCTAGTTTCCATTCCTGGTATATTACACATGCGATGTGGACATACCTTATCTATAACTTatgcatccatgtctgaggattgTTGTGCAAGAGACCAGGATTAGTACACCATACTGAATCAGTCTGGACTATTTCCCCATGAACCATACAATCTGATTTGTAGTTTCACATGTATACACATGTAGTCTGTAGAACAGTCTCACTTACTTTTTATGGTGCAATACTCACTTTGCACACTATTGTCTTTGTTGAGATGTATGATGAGGATGAGACATGATGACCTAGTGAACAATAAAGGCTGCTGAGGGAGGATGGCTCTTAATGGCTGAAATGAAGTGAATGGaatgacaaccccccccccccccaaaaaaagctgtttgattccatttactccattctgAACAATTTTATGAGCGATTGTCATGCAAGTTTATTGCTTCCTCTACAgagatgtcaatgttgtgaataaATGCAATGTAAAAAAT

Function

NR:

description
succinate dehydrogenase assembly factor 4, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580385.2 False 1221 mRNA 0.44 3 18849389 18854222
TU2105357 True 863 TUCP 0.44 3 18849697 18854172

Neighbor

gene id symbol gene type direction distance location
LOC110502393 LOC106606239 coding downstream 20421 18823584 ~ 18828968 (-)
LOC110502390 LOC106606232 coding downstream 61630 18777758 ~ 18787759 (-)
myoz1a LOC106606220 coding downstream 88847 18740296 ~ 18760542 (-)
LOC110502387 LOC106606172 coding downstream 111093 18624309 ~ 18738296 (-)
LOC110502386 opn4m1a1 coding downstream 247859 18527366 ~ 18601530 (-)
LOC110502395 LOC106606259 coding upstream 735 18854957 ~ 18860989 (-)
LOC110502397 LOC106608657 coding upstream 52860 18907082 ~ 18910807 (-)
LOC110502401 LOC106606294 coding upstream 229152 19083345 ~ 19092148 (-)
si:dkey-51a16.9 LOC106576688 coding upstream 257736 19111958 ~ 19145332 (-)
LOC110502406 LOC106608672 coding upstream 390073 19244295 ~ 19260880 (-)
G1838628 NA non-coding downstream 43824 18804077 ~ 18805565 (-)
G1838521 NA non-coding downstream 230244 18618299 ~ 18619145 (-)
G1838416 NA non-coding downstream 365600 18466496 ~ 18483789 (-)
LOC110502384 LOC106606127 non-coding downstream 474431 18373928 ~ 18434140 (-)
LOC110502380 syu non-coding downstream 522099 18310906 ~ 18327329 (-)
G1838709 NA non-coding upstream 87065 18941287 ~ 18941544 (-)
G1838711 LOC100380853 non-coding upstream 88059 18942281 ~ 18943024 (-)
G1838716 NA non-coding upstream 92521 18946743 ~ 18946960 (-)
G1838720 NA non-coding upstream 94531 18948753 ~ 18948980 (-)
G1838778 NA non-coding upstream 97274 18951496 ~ 19016128 (-)
LOC110502361 LOC106605890 other downstream 1118877 17725263 ~ 17781515 (-)
G1837980 NA other downstream 1130185 17709772 ~ 17719204 (-)
LOC110502353 LOC106605805 other downstream 1424069 17420323 ~ 17425430 (-)
G1835092 NA other downstream 3101654 15745638 ~ 15747735 (-)
tmem254 cj057 other downstream 3178209 15666203 ~ 15671223 (-)
LOC110502408 LOC106606370 other upstream 431174 19261070 ~ 19385465 (-)
G1841694 NA other upstream 2089085 20943307 ~ 20943615 (-)
G1841959 NA other upstream 2491292 21345514 ~ 21371799 (-)
G1843946 NA other upstream 4328765 23182987 ~ 23233423 (-)

Expression


Co-expression Network