LOC110502413 (LOC100136797)


Basic Information

Item Value
gene id LOC110502413
gene name LOC100136797
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19640206 ~ 19659354 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580436.2
CTGTAGTGGACTTGTCGCACAAGATATTTAGCATAAAGTCAGTCCCCCCGCTGTATGGGGTTCAGGCTTTCACTCTTCGACTGCCTTCATGTCTGACAACATTGAAAGAAGGAAACAGTCACTTTTTTACTTTACAGCCGGAGGAACTTTCTTCATGTCAGCAGCATCTCATTCGGACAATCATTAACCTAAACATCAAGCTTGTATTTTCGGGGGATTAAtttaaccagaccagaccaggatTTCATAGCCGGGAGGCCGGGGTTATGGATTTTAACCTTCTGACGGACAGTGAAGCCCGTAGCCCGGCGCTATCGCTCTCGGACTCCGGGACCCCACAACATGATCAGGGATGTAAAGGCCAAGACAACAGCGACACAGAGAAGTCCCACCAGAACCAAACAGATGAGTCGAACGCAGAGGACGGCTCTCTGAAGAAGAAGCAGCGCAGGCAGAGGACCCACTTCACCAGCCAGCAGCTCCAGGAGCTGGAGGCCACCTTTCAGAGGAACCGCTACCCCGACATGAGCACACGGGAGGAGATCGCCGTGTGGACCAACCTCACAGAGGCACGGGTTAGAGTATGGTTTAAAAATCGCCGTGCCaagtggaggaagagggagaggaaccaGCAGGCTGAGCTGTGTAAAAACGGCTTTGGTGCCCAGTTCAATGGACTAATGCAGCCCTATGATGACATGTACTCTGGCTACACTTACAACAACTGGGCCACCAAGAGTCTGGCCAGCAGTCCACTATCAGCCAAGAGCTTCCCCTTCTTCAACTCCATGAATGTAAGCCCCCTGTCATCCCAGCCCATGTTCTccccctccagctccatcccctcCATGAACATGGCCTCCTCCATGGTTCCCTCGGCGGTGGCCGGGGTGGCTGGCTCGGGCCTCAACAACCTGGGCAACCTCAACAATCTCAATAGCCCCACGCTGAACTCGGTCGCAGTCACCGCCAGCACCTGCCCCTACGCCACCACCGCCAGCCCTTACATGTACAGAGACACCTGCAACTCCAGCCTGGCCAGCCTCCGGCTCAAGGCCAAGCAGCATGCCAACTTCGCCTACCCGACCGTGCAAAACACAGTGTCTAACCTAAGCCCTTGCCAGTACGCAGTGGACCGGCCGGTATGAAtgacacccacacccacccagccTGCCCTGTAGCCCCCAACCCCCCTCTTAGACCCACTGACCCCCATCTTCCTCCTGGTCCCTGCCATGCTCCATCAGTAAATCAGAGTGAACGGCACACATCACCATTACACTCTTCGAAAAATggttccaaaatggttcttcggctgtccccataggataaccgttttctgttccatgtagaacccttttgggttccatgtagaaccctctgtagaaagggttttACATGGGACCCAATAGGGTTCTACTTGGAAATAAAAAGGGTTGTTCAAAGGGTTCTACTATGGGGAcaaccaaagaacccttttaggatccatgtttttctaagagtgtacatggACTGGTTAAGAAAATGTTGTTTGTCTAACTGATGGTACACAACAGGAATAATCTTCAACAGTTAGAACaaatcccctgatggaccaccaCGCTTCAAAGAACTCTCTCAAATATGGTGAGACTTTGTTGCTGAACCGACCAACTGTTAAAAATAATTTCTGAATTGAATCTGGGATAATGTTTTGGGACTGCATGACTAGAGTGGATTTGAAATGAAGAAAACCTGGATGCTCCAACTGCACTGGTGGTCAAACATGAACTCATTGTGACGCTTGCCACCATCACGGGAAAGGGACCTGTGGTTGCAATATGGGATAGAGGATGTATATAATGgacttgttttgttttgtatgtGACAAAACTATCTATGAAACGTAGAACTTTGGAGATGAGAAAAGCATGTTCTTCAAGAGCAGACCCTAGATTGATGTACTATGAGTACCTCCTTTAGGAATTTTAATCTTTGTTATGAATTCCACTCACCTCAGAAGGTCAGGTGTCAAAGGTCAAATCAGAAACAAGAGAGGAGCTAGCAGAATGTAGCCTCAGAGAGTAAAAATAACGGGGAGCGGAGACAAAACAACAATTTACACATCTGTCAGAGAACCAATATCAGAAACGTTTTAAAGAAAAGCTTAAAAAAGCCATTGAATATAAAAGTTTGTGTGGTGTTATAAAAAGGGAGTCCATGACTGTAAAAATTTATGTAAGAGTGGAGTTATAAAACAAGCTTTTTTCTGGTGTAGCCTGCTTTGTCTCATTAACATAATAAAAATGATCTGTTTTTATGAACAACA
>TU2106327
TGGTTGCAATATGGGATAGAGGATGTATATAATGgacttgttttgttttgtatgtGACAAAACTATCTATGAAACGTAGAACTTTGGAGATGAGAAAAGCATGTTCTTCAAGAGCAGACCCTAGATTGATGTACTATGAGTACCTCCTTTAGGAATTTTAATCTTTGTTATGAATTCCACTCACCTCAGAAGGTCAGGTGTCAAAGGTCAAATCAGAAACAAGAGAGGAGCTAGCAGAATGTAGCCTCAGAGAGTAAAAATAACGGGGAGCGGAGACAAAACAACAATTTACACATCTGTCAGAGAA

Function

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580436.2 False 2308 mRNA 0.48 4 19640206 19659354
TU2106327 True 307 lncRNA 0.38 1 19658857 19659163

Neighbor

gene id symbol gene type direction distance location
LOC110502412 LOC106606477 coding upstream 134365 19498334 ~ 19505841 (+)
LOC110502405 LOC106606354 coding upstream 413214 19193917 ~ 19226992 (+)
calhm3 calhm3 coding upstream 468979 19168800 ~ 19171227 (+)
LOC110502403 LOC106606339 coding upstream 471568 19151185 ~ 19168638 (+)
LOC110502400 NA coding upstream 562271 19076477 ~ 19078412 (+)
LOC110503088 NA coding downstream 9776 19669130 ~ 19732445 (+)
eno4 eno4 coding downstream 108391 19767745 ~ 19818728 (+)
LOC110502418 pla2g4f coding downstream 278346 19937700 ~ 19994896 (+)
LOC110502419 kcnk18 coding downstream 349284 20008638 ~ 20031283 (+)
LOC110502420 slc18a2 coding downstream 377690 20037044 ~ 20058237 (+)
G1839382 NA non-coding upstream 118852 19520889 ~ 19521354 (+)
G1839379 NA non-coding upstream 124148 19515839 ~ 19516058 (+)
G1839378 NA non-coding upstream 124959 19515016 ~ 19515247 (+)
G1839377 NA non-coding upstream 125711 19513814 ~ 19514495 (+)
G1839375 NA non-coding upstream 127290 19512684 ~ 19512916 (+)
G1839500 NA non-coding downstream 9266 19668620 ~ 19668835 (+)
G1839509 LOC106606490 non-coding downstream 19656 19679010 ~ 19686607 (+)
G1839514 NA non-coding downstream 39490 19698844 ~ 19699349 (+)
G1839694 NA non-coding downstream 86216 19745570 ~ 19745922 (+)
G1839383 NA other upstream 117194 19522264 ~ 19523012 (+)
G1838719 NA other upstream 691203 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 1339930 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 1692831 17943337 ~ 17947408 (+)
G1836916 NA other upstream 2314846 17322174 ~ 17325360 (+)
G1839872 NA other downstream 404490 20062064 ~ 20064987 (+)
LOC110502429 ttc27 other downstream 699443 20358591 ~ 20516930 (+)
G1840558 fbxo28 other downstream 1122511 20781865 ~ 20785203 (+)
G1844044 LOC106607169 other downstream 3685690 23345044 ~ 23346489 (+)

Expression


Co-expression Network