XLOC_037388 (ube2e3)


Basic Information

Item Value
gene id XLOC_037388
gene name ube2e3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 43797902 ~ 43883267 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073562
AACATCCCCTCATTCTCGGGGACAGGACGGTCGGTCACCGCTTATGCCTTCTTCACACGCATGCAGGCTGATGCATTGACAAATCCAGCTCAAGTGGAGCGTATCGTGAGGCGAAACAGTTTCACGTTGGTTTTAAAGGTTTTGTGAAAGCAGCCGAGGCGGTAGACGCTTATGTCCACGCGCCGTACAGCGCCACCTGTCGGCCCCGAGTAAAAGTGCAGCGCCTCCTCTCCTTCCTACTCTCCAATGTTCACAGCTCGGCCGGAGCCCGTCGTCTTCCCGGCTCCATTTCAACTGGATTTTTAACACTCCTAACCACCCCAGTTCAGGACAGGACCGCGTCTAAGGTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGTAGTTCTGATGCGGATCAGAGAGATCTCCCGGTGCCAGAACCAGAGGAACAAGAGGAGCGAAAACAACCAACGCCTCCACAACAGCAGAAAAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCAAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGtGCGGGACCCAAAGGTGACAACATCTATGAGTGGAGATCCACCATCCTGGGTCCACCAGGTTCAGTCTATGAGGGCGGCGTCTTCTTTCTGGACATCACCTTCTCCTCGGATTACCCCTTTAAGCCACCAAAGGTCACGTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGTGTGATCTGCCTGGACATCCTGAAGGATAACTGGAGCCCGGCTCTGACCATCTCCAAGGTCCTGCTTTCCATCTGTTCTCTGCTGACAGACTGCAATCCAGCGGATCCTCTGGTGGGAAGCATAGCTACTCAGTACCTGACCAACAGAGCAGAGCATGACAGAATAGCTCGACAGTGGACCAAGAGATACGCCACATAGACGGCAGGTCACCGACACCTCCAACCTCTGGTCTGCCCTTCCTCCTCTTCCCAAATCCCCTTCGTCCATCCCTCGCTCCGCACACTCTTCTCTGCCGCCACCGCCCCCAGTTCCCTTCCACCCGCAGGAGTGTAAAGATCCAGGAGAGGCAACTTTACAACGTGCAACAAATCTTTATAGCCTTTACAATACGGACTTCTGTGTATATGTCATACTGATTCTACCCCGTGTTTTTACCCGATAACGGACTGGGAGCGCAGACAGGACCCACCAAGGTGTAAAGGCTGCCGGAGTAGAATTTTGTAGCTGTAGATTTAGTTCTGTTTAAAAGCCTACTTGCAAGTCTTGCTTCTTtgggatataaaaaaaaacaaatgtattttgtgATGTAATAAGGAAAATGttcctaaagtcaaccaaatattaTGGTGCATTTTAGCCTAATTCATTATCTGTATGAAGTcaaagaaaaacgaaaaaaaaaagataaaaaaagaaaatgaaaaacaagcTGTAGATTATTAGAAATGATGTCATTTATATGAGACCCACACTCATTTCCAGTTCTGTGGTACATGCTGTTGTGAATCTGTTATACCTTTGTCAGTTTGTAATGAAGCGATCTCATTGAACGTTTTGTAGCTCAGCTGAGATGAGCAACCACTGTAACATCCCctcaaacacaataataaa
>TCONS_00073563
CTCCAATGTTCACAGCTCGGCCGGAGCCCGTCGTCTTCCCGGCTCCATTTCAACTGGATTTTTAACACTCCTAACCACCCCAGTTCAGGACAGGACCGCGTCTAAGGTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGTAGTTCTGATGCGGATCAGAGAGATCTCCCGGTGCCAGAACCAGAGGAACAAGAGGAGCGAAAACAACCAACGCCTCCACAACAGCAGAAAAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCAAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGGTATGTTATTTAACGCATGCTGTCATATTTGATCTGCTTTGAGAAGGAATCGCTATAGGAAGGAATTGACTTTTTAGCTCCAACTGTTAAAGTTTTTAagcctcttttttttaaaaaactaatggTCTCATTCTTGATCAATGTGGCATTTTGCTCCTCTGCTTCAAAGAGTTGGGaaggatgagttttttttttctccctcagaGCATTATTGTTACTGATGTTCCTGTGGTCTTGGCGCTgttgtgtttttaataatatgGCAGATGCTGCTCCGAAGCATATGGCTTTGATTTCACATCCTCATGCTGAACTTACTGCTGAACCCCCCCATCTGCTTTAATGAGCTGACCTAGAGATGCCAGAACAAGACGAGGGAGCTTTTAAAATTCCCTCTGTAGCGCTTGTGTTATTTTGCTTTGAAGGACGGCCGTTTTTGGGTTGT
>TCONS_00073564
GTGGAAAATGTCCAGTGAAAGACAACGGTCAGATGATGAAAGTCCCAGCACCAGCAGCGGTAGTTCTGATGCGGATCAGAGAGATCTCCCGGTGCCAGAACCAGAGGAACAAGAGGAGCGAAAACAACCAACGCCTCCACAACAGCAGAAAAAATCCACCAAACTGTCCAGCAAAACAACAGCCAAATTATCCTCCAGCGCAAAGAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGtGCGGGACCCAAAGGTGACAACATCTATGAGTGGAGATCCACCATCCTGGGTCCACCAGGTTCAGTCTATGAGGGCGGCGTCTTCTTTCTGGACATCACCTTCTCCTCGGATTACCCCTTTAAGCCACCAAAGGTCACGTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGTGTGATCTGCCTGGACATCCTGAAGGATAACTGGAGCCCGGCTCTGACCATCTCCAAGGTCCTGCTTTCCATCTGTTCTCTGCTGACAGACTGCAATCCAGCGGATCCTCTGGTGGGAAGCATAGCTACTCAGTACCTGACCAACAGAGCAGAGCATGACAGAATAGCTCGACAGTGGACCAAGAGATACGCCACATAGACGGCAGGTCACCGACACCTCCAACCTCTGGTCTGCCCTTCCTCCTCTTCCCAAATCCCCTTCGTCCATCCCTCGCTCCGCACACTCTTCTCTGCCGCCACCGCCCCCAGTTCCCTTCCACCCGCAGGAGTGTAAAGATCCAGGAGAGGCAACTTTACAACGTGCAACAAATCTTTATAGCCTTTACAATACGGACTTCTGTGTATATGTCATACTGATTCTACCCCGTGTTTTTACCCGATAACGGACTGGGAGCGCAGACAGGACCCACCAAGGTGTAAAGGCTGCCGGAGTAGAATTTTGTAGCTGTAGATTTAGTTCTGTTTAAAAGCCTACTTGCAAGTCTTGCTTCTTtgggatataaaaaaaaacaaatgtattttgtgATGTAATAAGGAAAATGttcctaaagtcaaccaaatattaTGGTGCATTTTAGCCTAATTCATTATCTGTATGAAGTcaaagaaaaacgaaaaaaaaaagataaaaaaagaaaatgaaaaacaagcTGTAGATTATTAGAAATGATGTCATTTATATGAGACCCACACTCATTTCCAGTTCTGTGGTACATGCTGTTGTGAATCTGTTATACCTTTGTCAGTTTGTAATGAAGCGATCTCATTGAACGTTTTGTAGCTCAGCTGAGATGAGCAACCACTGTAACATCCCctcaaacacaataataaaaaaatgtcccCAGGGTgaggtgtttgtgtgtttttctccATTCATGGTATACACTGGTATTACGCTACGTTTACATGACAGTGATGTAGTTTTTCCATTGCATTTTGATGAAGCTTCACGTCtacagaacttttttttaaatgatccgCGTTTACAACACTCCACTGGCTGTACTACTGTGCATATGCCAGGCCAGTATTTTGTGCTCTTAGAAAATGGTACCTATCAgtttgttaagtggtgacgtatgtaatactgtttccgggtccaagccgccactcatttgagttgagacatcattcgtttatgatcacgttttattcctatcacacattaaagttaattttatataaaatgatagtgtacacaacaatctctgcgcttgctgcataacaaataccaaaaatttaacaatttataaaaaaatgaatcactttctggccactGGATATTagacatggacatatatattgcgatcatgattttcgaaagtattaaatcgctttgtaaacgtttattataaccatttcatgagtcttcccattcagttgaatagagcgcttgtcacacgtcacacttaacaagcggataggtaaGTGATGATGTGCCTTTGGTGGCTTGGCATTTGTGTTTATGTATTATTGGTCATGTGTGTAAGACACATCTTTGTGTCAAAGTTTTAGcttcttgtacattaaggtagcgtttgGAAAAcggtgtcgagtttcttcactggtgttttgtttttactgaatgctaccttaatgtaaaagtagctaaaactcgcttatTCCGAGTTGCGAACTGGTGGATGTGCTACAACATTAATCattaggtaaacacaaaacaacagtttccatctggagttccttcatgggactcgacgTTTGTAAACAATCGCACCATCTGGCTCAAGGCTCTCAGCACCGTCGACCAATcacagcgataccaagccgaccaatcacagagcttgtacgcatcgttgcgacgtagttaccaagcggcaacctcctgctctccctcaggaagccaatacggaagtaactgaaactacAATTCATCCACTACGTAAGCACAAGGACTAGCGTGAATGTTAAAACCTCAGTATCCTCAGTATAAGTATTTTAGCTTTTTTCATATAGGTTACATAGaatagagaagaaaaaaaaagaacaaatactCAGCATGTGCTTTTTTCCACACTTCTTatgaatcataaaataaatgacattgGTCAGATGTTGCTTTTTACAGGAACATGCACATTTCCTCTTCTTAGATTTACGAtttgttattttaagttatttaatataTTGGGCTCTAAAAATATGCAACCTGACGGGACTATCGTGGCACTGGCAAAATGTCTACTGTAACAACATGAAATACTTTCAGTTTGTGTGTTGCTTGCAAAATatttcatcagaataaacagcagaGACGAGGGCACAAAGTGTCTACTATCAAGTCTGAAGTCCCAGAGCACACAAAACAAGCAGGTTTTCACAGTATCTAAATTCATTTTCACAACTATAtatgcgtgcgtgtgcgtgtgtgtgtgtgtgtgcgtgcgtgcgtgcgtgtgtgtgtgtgtgtttgtatataattCATAATTTGTCCTTCTGTAATAGTTGCATATGAATCCCTCAGTTGTAAAAAGATGaatcataaaatattaaagtcATTTCAGTAAGGGTAAATACAACTGATGAAAAATGAATTTTGGGGACCTGAAAGATTTTTATAAAGTACAGAAAGCATTATAGCTGCTCAGAAGGGACTTATGATAATAATTGCTGTTGTTCATTCAggtaataatacattattaagaatcaactgtatgtaatttttcttattcatttatttttttaatacttttattgtttcagaaaaaaatgtgatgcattcattttcttgtcagcttagtccctttattaacccagggtcgacacagcggaatgaaccgccaacatatccagcacgtgttttacacagcagatgcccttccagctgcaacccatctctgggaaacatcaactcAAACATaacacactcattcgcactcgtacactacggacaatttagcttaccagttcacctgtacagcagaaaccggagcacccagaggaaacccatgtgaacgcaggaagaacatgcaaactccacacagaaacgccaactgacccagccgaggctcgaaccagcgaccttcttgctgcactaccaactgtgccactgcgtcTTCAATGTGATACAAACATACTGTATTTGTAACTAAATACCAATCAAAGAACACTCACCCCATCCCAATAAagccataatatatatatatataaccctaaccatgcaaaaaaaaaaaaagattaaaaaaataataaaaagggtaactttgtaataatattaataacattaagaCATTGACAGTTAGTCATAAACacaggtgaggcagtggcgcagtaggtagtgctgttgcctcacagcaagaaggtcgctgggtcgctgtttcaaacctcagctcagttggcatttctgtgtggagtttgcatgttctccctgcctttgcgtgggtttcctccgggtgctccggtacaggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgtgtgtgaatgtgtgtggatttggatgtttcccagagttgggttgcggctggaaaggcatccgctgtgtaaaaacttgctggataagttgggggttcattccgctgtggcgacccaagattaataaagggactaagccgacaagaaaatgaatgaatgaataacaaacaCAGTGCACAttaacagtgtatgtaaacttttgaatcTGTACATTGCACACTAAATGTTGCTTTAGGTAGTTTGTTTGTCTGAGAGTGAGAATGTAGCTACAGTGTTTAAATGGaaacgtttttatttatttatttattta
>TCONS_00073565
CGTGCAGTAAACGCAGCAGAGGTAGAGGGCAGTGTAATTCCCTGGCTGCTTGCAATTCTTACagctttctctccctctcttctcCTCTCGCAGAATCCAGAAAGAGCTTGCAGAAATCACTCTGGATCCTCCACCCAACTGCAGtGCGGGACCCAAAGGTGACAACATCTATGAGTGGAGATCCACCATCCTGGGTCCACCAGGTTCAGTCTATGAGGGCGGCGTCTTCTTTCTGGACATCACCTTCTCCTCGGATTACCCCTTTAAGCCACCAAAGGTCACGTTTCGTACGAGGATCTATCACTGCAACATCAACAGTCAGGGTGTGATCTGCCTGGACATCCTGAAGGATAACTGGAGCCCGGCTCTGACCATCTCCAAGGTCCTGCTTTCCATCTGTTCTCTGCTGACAGACTGCAATCCAGCGGATCCTCTGGTGGGAAGCATAGCTACTCAGTACCTGACCAACAGAGCAGAGCATGACAGAATAGCTCGACAGTGGACCAAGAGATACGCCACATAGACGGCAGGTCACCGACACCTCCAACCTCTGGTCTGCCCTTCCTCCTCTTCCCAAATCCCCTTCGTCCATCCCTCGCTCCGCACACTCTTCTCTGCCGCCACCGCCCCCAGTTCCCTTCCACCCGCAGGAGTGTAAAGATCCAGGAGAGGCAACTTTACA

Function

symbol description
ube2e3 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

GO:

id name namespace
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0070936 protein K48-linked ubiquitination biological_process
GO:0070979 protein K11-linked ubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-408 Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein K11-linked ubiquitination; protein K48-linked ubiquitination; and protein K63-linked ubiquitination. Predicted to be active in nucleus. Orthologous to human UBE2E3 (ubiquitin conjugating enzyme E2 E3).

Ensembl:

ensembl_id ENSDARG00000012244

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073562 False 1677 mRNA 0.48 6 43797902 43880326
TCONS_00073563 False 809 lncRNA 0.45 3 43798143 43801464
TCONS_00073564 False 4271 mRNA 0.41 5 43799829 43883267
TCONS_00073565 True 682 lncRNA 0.54 4 43800876 43879792

Neighbor

gene id symbol gene type direction distance location
XLOC_037387 BX470133.1 coding upstream 22537 43775251 ~ 43775365 (+)
XLOC_037386 CU855879.1 coding upstream 466391 43331395 ~ 43331511 (+)
XLOC_037385 NA coding upstream 892280 42732199 ~ 42905622 (+)
XLOC_037384 gulp1a coding upstream 1147279 42546504 ~ 42650623 (+)
XLOC_037383 NA coding upstream 1297618 42348958 ~ 42500284 (+)
XLOC_037390 itga4 coding downstream 151523 44034790 ~ 44088067 (+)
XLOC_037391 itprid2 coding downstream 421713 44304980 ~ 44369857 (+)
XLOC_037392 itprid2 coding downstream 507987 44391254 ~ 44420380 (+)
XLOC_037393 ppp1r1c coding downstream 547438 44430705 ~ 44489978 (+)
XLOC_037394 NA coding downstream 571876 44455143 ~ 44456108 (+)
XLOC_037381 NA non-coding upstream 1639286 42158376 ~ 42158616 (+)
XLOC_037397 BX571855.1 non-coding downstream 1048908 44932175 ~ 44932293 (+)
XLOC_037399 NA non-coding downstream 1156498 45039765 ~ 45044991 (+)
XLOC_037400 BX510317.1 non-coding downstream 1180888 45064155 ~ 45064269 (+)
XLOC_037401 NA non-coding downstream 1229229 45112496 ~ 45122990 (+)

Expression


Co-expression Network