LOC100136607 (LOC100136607)


Basic Information

Item Value
gene id LOC100136607
gene name LOC100136607
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 19891713 ~ 19927867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124597.1
GGTTTATTTAAGTATGGCAACCTTGGTGGGAAACAGGACAATGGACATCAACGGTCCTGCTGcggcaaggacacacacacaagctgtgaCCAGAAACTACATCTCTCAACCAAGGCTGACATATTCTACTGTGTCTGGAGTGAATGGCCCCCTGGTGATTCTGGATAATGTGAAGTTTCCCAGGTATGCAGAGATTGTGCACCTGACTTTACCTGATGGCACCAGGAGGAGTGGCCAGGTGCTGGAGGTGATTGGCACCAAGGCTGTCGTACAGGTGTTTGAGGGGACATCTGGTATTGATGCCAAGAAGACGGCCTGTGAGTTCACCGGTGACATCCTGCGCACACCTGTGTCTGAGGACATGCTGGGACGTGTTTTCAATGGCTCAGGCAAGCCCATTGACCGTGGCCCCACTGTGCTGGCTGAAGACTATCTGGACATCATGGGCCAGCCCATCAACCCTCAGTGCCGTATCTACCCCGAAGAGATGATCCAGACCGGTATCTCTGCCATTGATGGGATGAACAGCATCGCCCGAGGTCAGAAGATTCCCATCTTCTCTGCAGCAGGCCTGCCCCACAACGAGATTGCTGCCCAGATTTGTCGTCAGGCTGGCCTGGTGAAGAAATCCAAGGATGTGATGGACTACAGCGACGATAACTTTGCCATCGTCTTTGCCGCCATGGGGGTGAACATGGAAACTGCTCGCTTCTTCAAGTCCGACTTTGAGGAGAATGGATCCATGGACAATGTTTGCCTGTTCTTGAACCTAGCCAACGACCCCACTATTGAGCGCATTATCACCCCTCGCCTTGCTCTGACCTCAGCTGAGTACCTGGCCTACCAGTGTGAGAAGCATGTCCTGGTCATCCTGACTGACATGAGCTCATACGCCGAAGCTCTGAGAGAGGTGTCTGCTGCCAGAGAGGAGGTCCCTGGTCGTCGTGGTTTCCCCGGTTACATGTACACTGATCTGGCCACCATCTACGAGCGTGCTGGGAGAGTGGAGGGCAGGAACGGCTCCATCACTCAGATCCCCATCCTCACCATGCCCAACGATGATATCACCCACCCCATTCCTGATCTCACAGGGTACATCACTGAGGGACAGGTCTATGTGGACAGACAGCTGCacaacagacagATTTACCCACCCATCAATGTGCTGCCCTCTCTGTCTCGATTGATGAAGTCTGCCATCGGTGAAGGAATGACCCGTAAAGACCATGCTGATGTCTCCAATCAGTTGTATGCCTGCTATGCCATTGGTAAGGACGTGCAGGCCATGAAGGCCGTGGTAGGAGAGGAGGCCCTCACCTCCGATGATCTGCTCTACCTGGAGTTCCTGCAGAAGTTTGAGAAGAACTTCATCGCTCAGGGCCCTTACGACAACAGGACTGTGTATGAGACCCTGGACATTGGCTGGCAGCTGCTCCGAATCTTTCCCAAAGAAATGCTGAAGCGGATTCCCCAGAGCACCCTGGCTGAGTTCTACCCCAGGGAGTCTGCAGCTCGTCACTGAGCTCCCCTCAACTCAGAGATCAGAGCAGTAATCTCAGCTCcctctgtaatgtattgtactgtatctgTGTCCAGAGTCCCGTATGGATTGTGTCTGATTATCTCCTTTTATTTAGAGATTTAAGCTTACCCTTAAATCAAAAAATTATCCTGTTATTTATTGGGATATGTTACTGTTGGATTTTGTTCATTGAATGTTGTCCCCACCTAAAGTAAATGAAACTTTCCAAGAAGGTAAAACATCCTATACATTTAGATCTCAAAGGAAGTTGTGTGTTCTCTTTCACATTTCAATGGTTTAAATTTGTCAAATATGTTTGTTACTGTCACCCTGAAGATAGCACTTCAATCACTTATTTCAGATGGTGGGGCAATTACTGTCAAATTGTAGGACTTCATCAAACACCCAGGAGGTCTGAAAGTGACATGACATAGTTTAATTTATTACACTGAACCTCATTGGTACTTAAATGTTTACTTGTATAGGCTTCAGGTAAGGGTTTCGATATTGGACAAACTTTTGGGCTACTTGAAATTGATTTATATTGTAGATGTCGAACTTTGTAGACTGTAATTGCTTATTTATTGGCCTCTAATTACTATTGATAGATAATTGTTTACATGGTTTATTATTGCTATATATATGCGCTGTAAAAAGAGTACTAAACATTCCCCTGTTTCGTTGTTAATTCTCTTGTTCGTTTGCCGAAATCATCTCTGTTATGGC

Function

NR:

description
V-type ATPase B subunit

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124597.1 True 2248 mRNA 0.48 14 19891713 19927867

Neighbor

gene id symbol gene type direction distance location
LOC110503056 NA coding downstream 10562 19879021 ~ 19881151 (-)
hspa12a LOC106606490 coding downstream 166337 19678988 ~ 19725376 (-)
LOC110502410 LOC106606442 coding downstream 260664 19505830 ~ 19631049 (-)
LOC110502408 LOC106606370 coding downstream 506248 19261070 ~ 19385465 (-)
LOC110502406 LOC106608672 coding downstream 630833 19244295 ~ 19260880 (-)
LOC110502416 vax1 coding upstream 16168 19944035 ~ 19955946 (-)
LOC110502421 pdzd8 coding upstream 141330 20069197 ~ 20136003 (-)
LOC110502422 LOC106606541 coding upstream 228536 20156403 ~ 20169212 (-)
LOC110502426 NA coding upstream 374426 20302293 ~ 20306390 (-)
LOC110502434 LOC106606739 coding upstream 837314 20765181 ~ 20774451 (-)
G1839974 NA non-coding downstream 31460 19860017 ~ 19860253 (-)
G1839962 NA non-coding downstream 46369 19844927 ~ 19845344 (-)
G1839917 NA non-coding downstream 77448 19776227 ~ 19814265 (-)
G1839919 NA non-coding downstream 109678 19778916 ~ 19782035 (-)
G1839892 NA non-coding downstream 146036 19745441 ~ 19745677 (-)
G1840096 NA non-coding upstream 133429 20061296 ~ 20062015 (-)
G1840167 NA non-coding upstream 137687 20065554 ~ 20067364 (-)
G1840170 NA non-coding upstream 139660 20067527 ~ 20067952 (-)
G1840169 NA non-coding upstream 140150 20068017 ~ 20068926 (-)
si:dkey-51a16.9 LOC106576688 other downstream 770370 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 1037541 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 2161201 17725263 ~ 17781515 (-)
G1837980 NA other downstream 2172509 17709772 ~ 17719204 (-)
G1841694 NA other upstream 1015440 20943307 ~ 20943615 (-)
G1841959 NA other upstream 1417647 21345514 ~ 21371799 (-)
G1843946 NA other upstream 3255120 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 3287618 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 3417224 23344353 ~ 23358461 (-)

Expression


Co-expression Network