LOC110502419 (kcnk18)


Basic Information

Item Value
gene id LOC110502419
gene name kcnk18
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20008638 ~ 20031283 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580444.2
CCTTACCGTGGAGAGATAATTTGGAATTGCGATACAATAGCTCTTCAGAGACTGGAAGATGTCGGTGGCAGAGGGAAAGTCACGAAGTTCGATAGAGAAGTCAATAAAGTTGAATCTATGGAAGCTGTTTCCTCACGTTTTTCTCATACTTTCACTCGTCGGATATGCAGCCTTGGGTGCGGTGCTATTCTGGTACATAGAGGGAGGGCGTGTGTACAAAACAGAACGGGAATATCGTGAGTTTTTGGGTGAACTGGTGCGCACAATTCAGAATTATCCAGTTAATTTGTCCAGCAATTCTACTCAAGAACAAGATTTGGTAAAGGAGCTAGAGAAAGAAATCAACAGGGGGTTCAAGTCCATATGGCTTCAACGTCCAGAGCGATGGACATACGATGCATCCATGTTCTTCTGCTGTACTGTATTCACAACCGTGGGTTATGGAGAGATATATCCGGTGACCCTGAATGGTAAGGTGGTCTGTATCCTGTATGCCATGGTGGGTATCCCCCTCATGCTCCTGGTCATCACAGATGTGGGAGACCTCATGGCCGTGCTCCTGTCCAGGGCCTACATCCACCTGCACACTCTTTTCTGCAGGTTGCGTCAATATGGCCGCTGGCTCCCCTCCCATCACACAGAGAAGTCAGGGGACGGGGGCCAGGGGGACCGCCAGGACGGAACCTACACATTCAGCCACAAGGTGGTGGTCCGGGAGCCCATCGACATCCGACAGGTCCTTCACAGCCAGCAGTCTGTGAAGCGCAAGTCCAACCAGTTGCTGAACAACACAAAGATCTTTGACTGCATCATTGCACAGGAGAACTTCAATAGGCAGGGCCCACTGGTGCGGAGCCTTTCTTGCCATGAGCTTGACAGCATGCCTCCCTTGCCCAAGGACTTTGCCATCTGGGACTTCACAGGCATCGGGGAGAGTATGGACAAGCTAAACGTCCCGCTGCTCCTCATCCTGGTGGTGGTGTTTGCCTACATCCTGTTTGGAGGCCTCATCCTGCCCCTGTGGGAGACAGAGTTCAACACCTTTGACGCCTACTACTTTTGCTTCATCACCCTCACCACCATCGGCTTCGGTGACATCGTGCCCAACCACCCCAAGTTCTTCATGCTCACCTTCGTCTTCATCATCACTGGCATGGCCATCATGTCCATGGCCTTCAAGCTGGGCCAGTCACGCATCGTCAGCTGTTACCGCCAGTGCATGCGCTGTATCAGCGGGGGGAAGGTCAAGAGGTATGACGAGTTGGAGAGCGACTGAATCAAAGAGTTTTGGCCCCCATTGGGCAGCTCAAGGGTTCTAGGGTTATAAGGCCCTGCACTGTGGGTCAAAAAAGCACTAAGAGTGGAGTTGAAGTTCTGTACGGCTGACTTGGGAACAGTGTCTAGCTCAGGGCGGTGCAAAGATAACCCTTGAGTTGACCCCTCATCATTAGCATGAGCAAATGAAAATGTGCATGTGGACAATGCTTAAAGACATCctccagtgatttttttttttaaatgtccagtTGAAAAGtgatatcccaagtataaatacagtaaagtacacacactcAAGGGTAAAACCAAAAAGTTTAGAGAAAAATAGTGTTTTTTTAGACACAATTACAAACTTCAAGGAATAGggcattcaaggagttggtctgatgggaaGTCGTGATGTCATCACCCTCCCTCCTTGCCTGAGGAACAATAGAGGAACATtagagaacaaaagaggaaaggCCCACCCCCCTGTGATATGTCATGACTCACCttgaccacctattgagatgttccttttgttaagtaaatcaggtatTAAATGAGGTAAAAATGAGACGAGTGCCACTTTAAGCAAAATTGTGTGATGTTATCTGTGTGAGATTCATCTTACATGTCTGTTGCCTGAATATACACTGGGTGTACaataacattaggaacaccttgctAATATATTTGCACCCACTTTTGCCCTTAAAACAGCCTCAAGTTtgagactctacaaggtgtcaactACAAgatgtcaaaagcattccacagggatgctggcccatgtagaCTCCAGtgcttggctggatgtcctttgggtggtggaccat

Function

symbol description
kcnk18 Enables outward rectifier potassium channel activity. Acts upstream of or within stabilization of membrane potential. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and eye. Human ortholog(s) of this gene implicated in migraine with aura. Orthologous to human KCNK18 (potassium two pore domain channel subfamily K member 18).

NR:

description
potassium channel subfamily K member 18-like

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20007 KCNK18, K2P18.1; potassium channel subfamily K member 18

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580444.2 True 2099 mRNA 0.48 3 20008638 20031283

Neighbor

gene id symbol gene type direction distance location
LOC110502418 pla2g4f coding upstream 13742 19937700 ~ 19994896 (+)
eno4 eno4 coding upstream 189910 19767745 ~ 19818728 (+)
LOC110503088 NA coding upstream 336183 19669130 ~ 19732445 (+)
LOC110502413 LOC100136797 coding upstream 349284 19640206 ~ 19659354 (+)
LOC110502412 LOC106606477 coding upstream 502797 19498334 ~ 19505841 (+)
LOC110502420 slc18a2 coding downstream 5761 20037044 ~ 20058237 (+)
LOC110502423 LOC106606565 coding downstream 116324 20147607 ~ 20156413 (+)
LOC110502425 LOC106606648 coding downstream 173195 20204478 ~ 20207839 (+)
LOC110502424 LOC106606575 coding downstream 177335 20208618 ~ 20349384 (+)
LOC110502429 ttc27 coding downstream 327308 20358591 ~ 20516930 (+)
G1839747 NA non-coding upstream 116024 19891684 ~ 19892614 (+)
G1839765 NA non-coding upstream 150780 19857585 ~ 19857858 (+)
G1839760 NA non-coding upstream 153880 19854529 ~ 19854758 (+)
G1839753 NA non-coding upstream 161986 19846438 ~ 19846652 (+)
G1839723 NA non-coding upstream 210525 19796185 ~ 19798113 (+)
G1839872 NA non-coding downstream 30781 20062064 ~ 20064987 (+)
G1840104 NA non-coding downstream 49225 20080508 ~ 20080832 (+)
G1840108 NA non-coding downstream 52765 20084048 ~ 20084400 (+)
G1840116 NA non-coding downstream 64035 20095318 ~ 20095694 (+)
G1840122 NA non-coding downstream 69486 20100769 ~ 20101115 (+)
G1839383 NA other upstream 485626 19522264 ~ 19523012 (+)
G1838719 NA other upstream 1059635 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 1708362 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 2061263 17943337 ~ 17947408 (+)
G1836916 NA other upstream 2683278 17322174 ~ 17325360 (+)
G1840558 fbxo28 other downstream 750582 20781865 ~ 20785203 (+)
G1844044 LOC106607169 other downstream 3313761 23345044 ~ 23346489 (+)

Expression


Co-expression Network