LOC110502420 (slc18a2)


Basic Information

Item Value
gene id LOC110502420
gene name slc18a2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20037044 ~ 20058237 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580445.2
GACACTGCTGTGCTCTAGGTGAGGATGTTCATGATAAAAGTTGCATGACGTCAAGGACCAGTCAAGAAACTAAAACGCCCTGCACATATCGTTTCTTTCACCACGGTTTGCAGCCGCAAAGTGATTTTTGCTAATGTGCATCTAAGAGCAAATCTTTTTTCGCTCGCTCCTTTGTGGACTCAAAAAATGGGAAGATTAGACACTCTGAGAGAATTTAATTTATTGTCATGGATGAGAGAGGAAAGACAATCGAGGAAGTTGACCCTGGTCATCGTTTTCATCGCCTTGCTGCTGGATAATATGCTTCTAACGGTGGTCGTCCCCATCATCCCCAGCTACCTATACACAGTTGATGATGCAGCAGCCAACATGGCCAAGAATCACACCACGGCCTCCCCACACACCCCTTCTGGAACCTTCCAGACCATCGTGTCCCTCTATGACAACTCTGTCAGGGTAACCAGCGGGGGCCCAATGGACTCCACACCCATACCCTTGGATCAGGCGCAGGCGGTCTCTCTTTCCACCTCGGCTCTCACACCCCACAATTCCACAGAGCCTGACTGCCCCAAAGCAGATGACCAGCTTCTCAATGAGAATGTGAAAGTGGGACTACTTTTTGCCTCCAAGGCCACCGTACAGCTCATCACCAACCCCTTTATTGGGCCTCTCACCAACAGAATAGGATACCAGATCCCCATGTTTGCCGGGTTCTGTATTATGTTCCTGTCAACCATTATGTTCGCCTTCTCATCGAGCTACACTCTGCTGTTTCTGGCCAGATCCCTGCAGGGTGtgggctcctcctgctcctccgtGGCTGGGATGGGGATGCTTGCCAGTGTGTACACAGatgatgaggagaggggaaatgCCATCGGGATAGCACTGGGTGGTCTGGCCATGGGCGTGCTGGTGGGCCCACCATTCGGCAGCGTCATGTATGAGTTTGTGGGGAAAACGGCGCCTTTCCTCATTCTGGCTGTTCTGGCTGTGCTGGATGGAGCACTGCAACTGTTCATTCTCCAGCCCTCAAAGGTGGAACCAGAGAGCCAGAAAGGGTCCTCACTTTGGAGCCTTATTAAAGATCCATACATACTCATTGCTGCAGgatccatttgttttgcaaacatgGCCATTGCAATGTTAGAACCAGCGTTGCCTATTTGGATGATGGAGACCATGTGTCCAAGAAAATGGCAGCTAGGCGTTGCCTTTGTGCCAGCCAGCATCTCCTACCTTATTGGAACTAACATCTTTGGCGTCCTCGCGCACAAGatggggagATGGCTGTGCTCTCTCATCGGGATGGTCCTCGTGGGGGTTAGCATCCTCTGTGTCCCTTTCGCTAAGGACATCTATGGACTGATACTTCCGAATTTTGGTGTTGGTTTTGCAATTGGCATGGTGGATTCCTCTATGATGCCAATCATGGGATATTTGGTGGACCTGAGACATGTGTCAGTCTATGGCACTGTGTACGCCATTGCTGATGTGGCTTTCTGCATGGGCTTTGCTTTAGGTCCGTCCGCTGGAGGCGCCATAGCAAAGAACATTGGGTTCCCCTGGCTCATGACCATCATCGGCGTCGTGGACATCCTCTTCGCTCCCCTCTGCTACTTCCTCAGGAGTCCTCCTGGGAGGGAAGAGAAAATGGCCATCTTGATGGACTCTAACTGCTCGATGAAGACCCGATCATACTCAACACAGGGGAACACAGAGTAcgaagagatggagacagagtaCGATGAGTATTAATGGACACCAGACATGTATGTTACCTTCCAGAGGATCTATTTTGTTGTACAAAAACAGAGATAcaatgtttattatttttaacAGCGAAGCTGTTTCGTTGTGAGTGTCCGTCTTCACTGTTCTGTGTCATTGTTATTGTACGACTAGAGCAAACCAAAGTTGTTGTCATTGCCCTGTGTTTATTTTGAGCCAACAGCCTTATCCAATGGAAGTGGGGCCGTGTCAAAACAGGGTTTTCATGGGCCGTAATagcagactgctgtgagtcataTTTACTGAATAGTTCAGATGAGGGTGGTATTATACAGTCGTGTccaaaagttttgaaaatgacacaaatattaattttcaaagtctgctgtctcagtttgtatgatgccaatttgcatatactccagaatgttatgaagagtgaccagatgaattgcaaagtccctc
>TU2106759
CTGCACATATCGTTTCTTTCACCACGGTTTGCAGCCGCAAAGTGATTTTTGCTAATGTGCATCTAAGAGCAAATCTTTTTTCGCTCGCTCCTTTGTGGACTCAAAAAATGGGAAGATTAGACACTCTGAGAGAATTTAATTTATTGTCATGGATGAGAGAGGAAAGACAATCGAGGAAGTTGACCCTGGTCATCGTTTTCATCGCCTTGCTGCTGGATAATATGCTTCTAACGGTGGTCGTCCCCATCATCCCCAGCTACCTATACACAGTTGATGATGCAGCAGCCAACATGGCCAAGAATCACACCACGGCCTCCCCACACACCCCTTCTGGAACCTTCCAGACCATCGTGTCCCTCTATGACAACTCTGTCAGGGTAACCAGCGGGGGCCCAATGGACTCCACACCCATACCCTTGGATCAGGCGCAGGCGGTCTCTCTTTCCACCTCGGCTCTCACACCCCA

Function

symbol description
slc18a2 Predicted to enable serotonin:sodium symporter activity. Acts upstream of or within swimming behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane and terminal bouton. Is expressed in brain and neurons. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in Parkinson's disease and type 1 diabetes mellitus. Orthologous to human SLC18A2 (solute carrier family 18 member A2).

NR:

description
synaptic vesicular amine transporter-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580445.2 False 2196 mRNA 0.49 16 20037044 20058237
TU2106759 True 466 TUCP 0.50 3 20037123 20039940

Neighbor

gene id symbol gene type direction distance location
LOC110502419 kcnk18 coding upstream 5761 20008638 ~ 20031283 (+)
LOC110502418 pla2g4f coding upstream 42148 19937700 ~ 19994896 (+)
eno4 eno4 coding upstream 218316 19767745 ~ 19818728 (+)
LOC110503088 NA coding upstream 364589 19669130 ~ 19732445 (+)
LOC110502413 LOC100136797 coding upstream 377690 19640206 ~ 19659354 (+)
LOC110502423 LOC106606565 coding downstream 89370 20147607 ~ 20156413 (+)
LOC110502425 LOC106606648 coding downstream 146241 20204478 ~ 20207839 (+)
LOC110502424 LOC106606575 coding downstream 150381 20208618 ~ 20349384 (+)
LOC110502429 ttc27 coding downstream 300354 20358591 ~ 20516930 (+)
LOC110502431 ltbp1 coding downstream 460574 20518811 ~ 20662857 (+)
G1839747 NA non-coding upstream 144430 19891684 ~ 19892614 (+)
G1839765 NA non-coding upstream 179186 19857585 ~ 19857858 (+)
G1839760 NA non-coding upstream 182286 19854529 ~ 19854758 (+)
G1839753 NA non-coding upstream 190392 19846438 ~ 19846652 (+)
G1839723 NA non-coding upstream 238931 19796185 ~ 19798113 (+)
G1839872 NA non-coding downstream 3827 20062064 ~ 20064987 (+)
G1840104 NA non-coding downstream 22271 20080508 ~ 20080832 (+)
G1840108 NA non-coding downstream 25811 20084048 ~ 20084400 (+)
G1840116 NA non-coding downstream 37081 20095318 ~ 20095694 (+)
G1840122 NA non-coding downstream 42532 20100769 ~ 20101115 (+)
G1839383 NA other upstream 514032 19522264 ~ 19523012 (+)
G1838719 NA other upstream 1088041 18948517 ~ 18949003 (+)
LOC100136626 LOC106606089 other upstream 1736768 18269654 ~ 18300278 (+)
LOC110502370 NA other upstream 2089669 17943337 ~ 17947408 (+)
G1836916 NA other upstream 2711684 17322174 ~ 17325360 (+)
G1840558 fbxo28 other downstream 723628 20781865 ~ 20785203 (+)
G1844044 LOC106607169 other downstream 3286807 23345044 ~ 23346489 (+)
G1845108 NA other downstream 4268027 24326264 ~ 24354246 (+)

Expression


Co-expression Network