Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110502420 |
| gene name | slc18a2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048587.1 |
| NCBI id | CM023241.2 |
| chromosome length | 62880378 |
| location | 20037044 ~ 20058237 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| slc18a2 | Predicted to enable serotonin:sodium symporter activity. Acts upstream of or within swimming behavior. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane and terminal bouton. Is expressed in brain and neurons. Used to study anxiety disorder. Human ortholog(s) of this gene implicated in Parkinson's disease and type 1 diabetes mellitus. Orthologous to human SLC18A2 (solute carrier family 18 member A2). |
| description |
|---|
| synaptic vesicular amine transporter-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021580445.2 | False | 2196 | mRNA | 0.49 | 16 | 20037044 | 20058237 |
| TU2106759 | True | 466 | TUCP | 0.50 | 3 | 20037123 | 20039940 |
20,032,000
20,036,000
20,040,000
20,044,000
20,048,000
20,052,000
20,056,000
20,060,000
20,064,000
20,068,000
20,072,000
20,076,000
NC_048587.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110502419 | kcnk18 | coding | upstream | 5761 | 20008638 ~ 20031283 (+) |
| LOC110502418 | pla2g4f | coding | upstream | 42148 | 19937700 ~ 19994896 (+) |
| eno4 | eno4 | coding | upstream | 218316 | 19767745 ~ 19818728 (+) |
| LOC110503088 | NA | coding | upstream | 364589 | 19669130 ~ 19732445 (+) |
| LOC110502413 | LOC100136797 | coding | upstream | 377690 | 19640206 ~ 19659354 (+) |
| LOC110502423 | LOC106606565 | coding | downstream | 89370 | 20147607 ~ 20156413 (+) |
| LOC110502425 | LOC106606648 | coding | downstream | 146241 | 20204478 ~ 20207839 (+) |
| LOC110502424 | LOC106606575 | coding | downstream | 150381 | 20208618 ~ 20349384 (+) |
| LOC110502429 | ttc27 | coding | downstream | 300354 | 20358591 ~ 20516930 (+) |
| LOC110502431 | ltbp1 | coding | downstream | 460574 | 20518811 ~ 20662857 (+) |
| G1839747 | NA | non-coding | upstream | 144430 | 19891684 ~ 19892614 (+) |
| G1839765 | NA | non-coding | upstream | 179186 | 19857585 ~ 19857858 (+) |
| G1839760 | NA | non-coding | upstream | 182286 | 19854529 ~ 19854758 (+) |
| G1839753 | NA | non-coding | upstream | 190392 | 19846438 ~ 19846652 (+) |
| G1839723 | NA | non-coding | upstream | 238931 | 19796185 ~ 19798113 (+) |
| G1839872 | NA | non-coding | downstream | 3827 | 20062064 ~ 20064987 (+) |
| G1840104 | NA | non-coding | downstream | 22271 | 20080508 ~ 20080832 (+) |
| G1840108 | NA | non-coding | downstream | 25811 | 20084048 ~ 20084400 (+) |
| G1840116 | NA | non-coding | downstream | 37081 | 20095318 ~ 20095694 (+) |
| G1840122 | NA | non-coding | downstream | 42532 | 20100769 ~ 20101115 (+) |
| G1839383 | NA | other | upstream | 514032 | 19522264 ~ 19523012 (+) |
| G1838719 | NA | other | upstream | 1088041 | 18948517 ~ 18949003 (+) |
| LOC100136626 | LOC106606089 | other | upstream | 1736768 | 18269654 ~ 18300278 (+) |
| LOC110502370 | NA | other | upstream | 2089669 | 17943337 ~ 17947408 (+) |
| G1836916 | NA | other | upstream | 2711684 | 17322174 ~ 17325360 (+) |
| G1840558 | fbxo28 | other | downstream | 723628 | 20781865 ~ 20785203 (+) |
| G1844044 | LOC106607169 | other | downstream | 3286807 | 23345044 ~ 23346489 (+) |
| G1845108 | NA | other | downstream | 4268027 | 24326264 ~ 24354246 (+) |
