polr1c (rpac1)


Basic Information

Item Value
gene id polr1c
gene name rpac1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20796170 ~ 20801471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580460.2
TGTTGTCAGTTTTCATTTTAACTGACGCTTGAGAGCGCCACAATAAGTAGAGCGAAGCTTGTGACGTCATTGAAAACACGAGCTAAAATGGCAGCGACCATGAGCAACGTGGATGAAATTCGGAATAGAGTGATATTAGGTGAATTTGATATAAAAAATGTTCATACAACAGATTACCCTGGCAATTATCCTGGCTACGATGACACATGGAACTTGCAGAAATTTCAAAAGAATTTCAGAATCGACGTGGTGCAAATGGATGAGACTTCTCTGGAGTTCGACATGGTGGGCATAGATGCTGCTCTCGCCAATGCCTTTCGAAGGATATTGCTTGCAGAGGTCCCCACTATGGCTGTCGAGAAGGTGCTTATTTACAACAACACATCTATCATTCAGGATGAGATCCTTGCCCACAGGCTGGGCTTGATCCCTATCAAGGCTGACCCACGACTGTTCGAGTACAGAAGTGCAGGGGACGAAGAAGGCACAGAAATCGACACAATTCAACTTCAACTGAAGATCAAATGCACCAGGAACCCCAGAGCCACCAAAGACTCCGCTGACCCCCGGGAACTTTACCTGAATCACATGGTGTACTCTAAGGACATGAAGTGGGCCCCTATTGGGAACCAAGCTGATGTGTTTGCAGATGCTAACATCGGTCCAGTACATGGGGACATCCTTCTGGCGCAGCTCCGGCCTGGACAGGAGCTGGATATAGTCATGCACTGTGTGAAAGGCATTGGTCAAGACCATGCCAAGTTTTCACCTGTGGCTACAGCCAGTTACAGACTCCTTCCTGAGATCACACTAATGGAAACAGTGGAGGGGGAGAAAGCAGAGCGACTAAAACGCTGCTTCTCACCTGGAGTCATTGAAGTGGAGAACCATGGGGGAAAGGTTGTTGCCAAGGTGGTGAACAGCCGCTTAGATACCTGCAGTAGGGAGGTTCTCCGACATGACGACCTCAAGAATGCTGTGAAACTTGCAAGAGTGCGGGACCATTTTATCTTTTCTGTAGAATCCACTGGCATCCTGGCACCTGATGTCCTGGTCACAGAGGCCATCAAAGTTCTCATGACCAAGTGTCAGCGATTCCTCGGTGAACTCGATTCCACAGAGATGGAATAAGAGCTATGTTGGACCAAATGGAAATACCCACTACGGGGGTTGGATATATGCGTGTGTTGAGCCGGTGTGCAACATGCTTTGGATAGTAGAATACAACACCAGTTGGAATAGCAGAACAATGCGGGAATGCTGAGGATGCTTTATTTTAGATTAACTAGACTATGGATTAGTTTGTTCAAATATGTACCCAGCATGACTTTGTCGTCCTCAAATAGTTGTGCTACTTATATATTTTCTATTCTGATTCATGCTAATGTCACTTGCAAATCCTTATGGCTCACCCATGTCATTAGGCCATTTGTAGAATTCTGCCTGAATTCTGTCCTTTTGGGTATACAAGAAAAATAGGTTGATGTCTTTACTGAATGAAGACGGATTTAGAACAAATTTGTCAATGGCGGGATTGGCTCTTCTCAGCCAGGTGCacagttgtgttgtgttctgtatGGACTTGTTTCATGAAACAATAAAGGTAAAGCATATTACTCTAAA
>XM_036959798.1
AACCCTACTACATCTCTGGCTGCATACAGCAGCAGACAGCATGATTCTTGAATGAAGAGTGACAGTCTAAAACGCATTTAGGTTCATACAACAGATTACCCTGGCAATTATCCTGGCTACGATGACACATGGAACTTGCAGAAATTTCAAAAGAATTTCAGAATCGACGTGGTGCAAATGGATGAGACTTCTCTGGAGTTCGACATGGTGGGCATAGATGCTGCTCTCGCCAATGCCTTTCGAAGGATATTGCTTGCAGAGGTCCCCACTATGGCTGTCGAGAAGGTGCTTATTTACAACAACACATCTATCATTCAGGATGAGATCCTTGCCCACAGGCTGGGCTTGATCCCTATCAAGGCTGACCCACGACTGTTCGAGTACAGAAGTGCAGGGGACGAAGAAGGCACAGAAATCGACACAATTCAACTTCAACTGAAGATCAAATGCACCAGGAACCCCAGAGCCACCAAAGACTCCGCTGACCCCCGGGAACTTTACCTGAATCACATGGTGTACTCTAAGGACATGAAGTGGGCCCCTATTGGGAACCAAGCTGATGTGTTTGCAGATGCTAACATCGGTCCAGTACATGGGGACATCCTTCTGGCGCAGCTCCGGCCTGGACAGGAGCTGGATATAGTCATGCACTGTGTGAAAGGCATTGGTCAAGACCATGCCAAGTTTTCACCTGTGGCTACAGCCAGTTACAGACTCCTTCCTGAGATCACACTAATGGAAACAGTGGAGGGGGAGAAAGCAGAGCGACTAAAACGCTGCTTCTCACCTGGAGTCATTGAAGTGGAGAACCATGGGGGAAAGGTTGTTGCCAAGGTGGTGAACAGCCGCTTAGATACCTGCAGTAGGGAGGTTCTCCGACATGACGACCTCAAGAATGCTGTGAAACTTGCAAGAGTGCGGGACCATTTTATCTTTTCTGTAGAATCCACTGGCATCCTGGCACCTGATGTCCTGGTCACAGAGGCCATCAAAGTTCTCATGACCAAGTGTCAGCGATTCCTCGGTGAACTCGATTCCACAGAGATGGAATAAGAGCTATGTTGGACCAAATGGAAATACCCACTACGGGGGTTGGATATATGCGTGTGTTGAGCCGGTGTGCAACATGCTTTGGATAGTAGAATACAACACCAGTTGGAATAGCAGAACAATGCGGGAATGCTGAGGATGCTTTATTTTAGATTAACTAGACTATGGATTAGTTTGTTCAAATATGTACCCAGCATGACTTTGTCGTCCTCAAATAGTTGTGCTACTTATATATTTTCTATTCTGATTCATGCTAATGTCACTTGCAAATCCTTATGGCTCACCCATGTCATTAGGCCATTTGTAGAATTCTGCCTGAATTCTGTCCTTTTGGGTATACAAGAAAAATAGGTTGATGTCTTTACTGAATGAAGACGGATTTAGAACAAATTTGTCAATGGCGGGATTGGCTCTTCTCAGCCAGGTGCacagttgtgttgtgttctgtatGGACTTGTTTCATGAAACAATAAAGGTAAAGCATATTACTCTAAA

Function

NR:

description
DNA-directed RNA polymerases I and III subunit RPAC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03027 RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580460.2 False 1623 mRNA 0.45 9 20796170 20801346
XM_036959798.1 True 1545 mRNA 0.46 9 20796170 20801471

Neighbor

gene id symbol gene type direction distance location
LOC110502435 LOC106606749 coding downstream 530 20780780 ~ 20795640 (-)
LOC110502434 LOC106606739 coding downstream 21719 20765181 ~ 20774451 (-)
LOC110502426 NA coding downstream 489780 20302293 ~ 20306390 (-)
LOC110502422 LOC106606541 coding downstream 626958 20156403 ~ 20169212 (-)
LOC110502421 pdzd8 coding downstream 660167 20069197 ~ 20136003 (-)
si:dkey-191g9.7 LOC106606765 coding upstream 8666 20810137 ~ 20815145 (-)
LOC110502440 LOC106606775 coding upstream 31030 20832501 ~ 20849619 (-)
LOC110502444 LOC106606853 coding upstream 343169 21144640 ~ 21285931 (-)
LOC110502445 NA coding upstream 497123 21298594 ~ 21304431 (-)
LOC110502447 LOC106606998 coding upstream 711500 21512971 ~ 21516875 (-)
G1841547 NA non-coding downstream 88288 20676815 ~ 20707882 (-)
G1841470 ltbp1 non-coding downstream 137835 20652789 ~ 20658335 (-)
G1841394 NA non-coding downstream 384359 20394056 ~ 20411811 (-)
G1841334 LOC106606575 non-coding downstream 393938 20273007 ~ 20402232 (-)
G1841610 NA non-coding upstream 2916 20804387 ~ 20804679 (-)
G1841612 NA non-coding upstream 5145 20806616 ~ 20806961 (-)
G1841614 NA non-coding upstream 6772 20808243 ~ 20808453 (-)
G1841646 NA non-coding upstream 60941 20862412 ~ 20862668 (-)
G1841648 NA non-coding upstream 66682 20868153 ~ 20868472 (-)
LOC110502408 LOC106606370 other downstream 1411128 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 1674827 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 1941998 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 3065658 17725263 ~ 17781515 (-)
G1837980 NA other downstream 3076966 17709772 ~ 17719204 (-)
G1841694 NA other upstream 141836 20943307 ~ 20943615 (-)
G1841959 NA other upstream 544043 21345514 ~ 21371799 (-)
G1843946 NA other upstream 2381516 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 2414014 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 2543620 23344353 ~ 23358461 (-)

Expression


Co-expression Network