LOC110502440 (LOC106606775)


Basic Information

Item Value
gene id LOC110502440
gene name LOC106606775
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 20832501 ~ 20849619 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960267.1
gacagtgtctactgtgtgtgagacagagggaaataaagacagagagggagagagggagagggagagggagagagaacgcaAGCGCAGTGACTGAAGACAGGGCACGCCTGGCCTGAAGCAgggctgctgctctctcattactgagtcaaacacacacactcacacacacacacacatacacacatacacacacatacagtatcgGCAGAGGAAGGAAGCCAGAGAGCCGGGATAAAATCCCAGGGAGACAGTAGTGAGCGCCTGCCGACCTGCAGCCATGGCCGACGTGGACTCCCTGACTGAGGCACTGAATGCCATCAGTGTGAGCACGGAGTTGGTAGAGCAGGAGCTGAAGCCTCATCTGGACACCCTGCTGGCTGTACTACTAGAGAAGAAGAAGGGTGCCGCAGTGGAGATTGCCTCCAGTGGTATCGTTCCCATCCTGGCCCAGTCCCTCGGAAAGAAGAGTCTCCTCACCAAACAGGTGGCACTGGTGGTGGCAGAAATGGCCAGGGAAGCGGCCGTGAGGGACACGTGCATTGAGGCAGGGCTAGTGAAGGTTCTGGTGCCCCTGCTGAACAGTGCAGATGAGGAACTGCTGCTCCACACTGGAAGAGCCATCGGACGCATCTGCTTCGACAACAcgGCCCAGCAGGATCAGCTGGTGCAGAGTGGGGTGATCCCCAGGCTGGTGGCCATCATGAGGGAGTATCCAGAGAATGACCCACTGGTCAACGTGTGTCTGCTGGCCCTCTGTAACCTGGCCGACATGGACACGGCGCGGGAGGCGCTGGTAGAGGTGGGCGTGGCAGAGGTGCTGACAGCCCAGCTGAAACGGGCTCCTGACGCAGAGAGAAGACACATCATACTGGAGGTTCTGGGATCCCTGGGAGAGAGTGACGTGCTAAAGCTGCAGTTTGTGGAGTCGGGGGTGCCTAAGGCTCTGTCTGAGATGATTCGAGGTCTACAGGGTGGCTCTGACCCCCATGATCTCTGCAGCATCAAGATCGGCTCCAACCTCATCGTGTCTCTCCTTCTGGGAGATGAGTCCATGCAGAAGTGTTTCGGCGAGGGCACAGGGGTGGTGTACCAGGACGTGCTCTCCTGGCTGCAGTCCTCCAACACTCAGCTGCAGCTGTCTGGAGCCCTGGCCATCGCCAATTTTGCCAGGAACGATAGTAActgtgtgaagatgttggagTTGGGGGTGGTTCCTCATATCCTGACCCTGCTAGAGCAGCATGTGGACGAAGGCGATGTGTCCGTCCAGCATGCCGGACTGAGCGCTCTCAGAAACCTGGCCATCCCAGCTACTAATAAGGTGAGGATGCTGAAGGACGGGGTGACAGAGAGAATCAGGACCTTGCTGCGCTCTGACATGCCCCCAGTGCAGTTCAAACTACTGGGCACCCTGCGCATGATGGTGGATGGCCAAGAGGAGGCAGCTACGGTGCTGGGCAAAGATGAGGTTCTCTTGGCGAGGGTCATGGAGTGGTGTGAGGCAAGGGACCATGCAGGGGTCAGGGGAGAGGCAAACCGCCTCCTGGCTGCCCTTATTAGACACAGTCGTGCtccgGAAGTCATCAACGCTGTAACCAAAGCAGATGGGGTGCGTCACCTCATCTCTATGGCAACCAGTGAACACGTCATCATGCAGAATGAAGCCCTGGTTGCCCTGGCGATTGCATCTGCCATTGACATTGACTCCATGCAGGAATCCTTCCAGGAGGCAGAGCTCTTGCCTACACTGCAGAAGATGCTGGAAGACCCAGTGGGGGCAGTGGAGGTCAAGTTCAGTGCCCTAGGCCTCATCTGTAGCCTGGCCAACTCCAgCATGATGAAGGAAGAAATGGAATCTCTAAACCTGAAGGAGACGCTCACCAAGCTCTCTGGTCACTCCAGCACCAAGCTAGCCACACAGGCCGACACAGTGCTGGCCATGCTCTCTGAAACGAACTAGACTGTCCTGACCGGACCACTGCCCTGGTCAATGTGATCATGGACTCTCCGCACCACGTGCCACCACAATCACCCCTACTACCGTGACCACACCATCCTACCCATCAACCGCACTTCACCAGAGAACAACCCATCCCTCGCTCTGAAAGGGGAAAAGAGGTGGAGGGTTTGAAAATACATATTGACAGTCTTCCAAAGCTGGGTTTTCATTCACCTGGCCTATGGAGAACACAGTTGGACAGAGATATACTAGGACTGACCAACCCAATCTGACAGAGAGGTCACAAGGTGATTGCCGATGTTCGAAGCACAAGCTGAATGAGCCAACCCATGTAAAACGCACACGAATCACAACATCCCCGGTTCACTCATCATGACCATCTGTAGAAAGAGTgtttactgtatgtgtgaaatAGCTATTCTAATCAGTACACCAATCAGTTGAATGTACACTATGTAGATTTCCTGTAGGGATCAGTGTATATTGTCAAAGGAAATGTTTGCGTATGTATGCGCCATAGAGTTAACGATGGCTACTATTCATAGCATCTACTGTGTTAACCCTCAATGGAAAACATAAAACTAACATCTGACACTGTTTATCAATGTGATGTTCTATATATGCTCTGTATTGACCAATGTATATGGATGTAAATGTTCCAAGAATATGACCATGCCTGTCTCTTCTCTGTGGATCTCGTATAGTGAGATTCTCTTGGCAATATCTACAGTGTACAggacaagaaaagcattcaaagtCAATATCTCAATCATGATCTTTTACCAAAGTACATTCTAATTGTTAAAACTGTGCGCGAGGAAGTAAGAAATCTAATCTGATTAACAATTGTGTGAGGCGTTTGATTCTTTGATTGTCATCCAGGTACCAGGAAGATAACAGTAACTGTAGACCTAAGAGGTTTTTATCCCATGTTGTCGGAGGGAAGATCTCCAGACAtttatccccccaaaaaattcCTACTGACACATCTAGCTCAGTCCTAGTTATGTAAGAGCCCGGGTGGGTGGGCACTGGGCAGGGTAATCATTACAGAGCTGTGAGAGTGTCAGGCAGCTTTCCCACTGGGTGCCAGCTCCAACATTCTGATGAAAAGAGATCAATATGTTGTGTGAATGCTGGGGCAGCAAAGGGCTCGTGATGAAGGGCGCTTTAATGTTGCACTCAGAGCCACGCTGATTCATCCAACTCCTTTTAAGACCAATTTGTTAAGGTGTCTAGAGCCCAACGGAGACTGGCTGGCTATTTCAAAAGCATTTACATAGTGAATATCAACTGAAAACAGCCCTCCGTCCCTCTGTCTGCCCTTAATAGTACCTAATAAGCTACTCAATGGGAGCTGAGTTGTTGTTATTGAATTTATCTTTGAAATATAACTATTTTGATGTTTTAAAAAGAGTGGCTTACAGAAACAActggaaataaaataaaaatatgaatgGCCATG

Function

NR:

description
rap1 GTPase-GDP dissociation stimulator 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960267.1 True 3425 mRNA 0.51 14 20832501 20849619

Neighbor

gene id symbol gene type direction distance location
si:dkey-191g9.7 LOC106606765 coding downstream 17356 20810137 ~ 20815145 (-)
polr1c rpac1 coding downstream 31030 20796170 ~ 20801471 (-)
LOC110502435 LOC106606749 coding downstream 36861 20780780 ~ 20795640 (-)
LOC110502434 LOC106606739 coding downstream 58050 20765181 ~ 20774451 (-)
LOC110502426 NA coding downstream 526111 20302293 ~ 20306390 (-)
LOC110502444 LOC106606853 coding upstream 295021 21144640 ~ 21285931 (-)
LOC110502445 NA coding upstream 448975 21298594 ~ 21304431 (-)
LOC110502447 LOC106606998 coding upstream 663352 21512971 ~ 21516875 (-)
LOC110502449 LOC106607006 coding upstream 674115 21523734 ~ 21528655 (-)
LOC110502450 LOC106607022 coding upstream 710381 21560000 ~ 21604318 (-)
G1841614 NA non-coding downstream 24048 20808243 ~ 20808453 (-)
G1841612 NA non-coding downstream 25540 20806616 ~ 20806961 (-)
G1841610 NA non-coding downstream 27822 20804387 ~ 20804679 (-)
G1841547 NA non-coding downstream 124619 20676815 ~ 20707882 (-)
G1841470 ltbp1 non-coding downstream 174166 20652789 ~ 20658335 (-)
G1841646 NA non-coding upstream 12793 20862412 ~ 20862668 (-)
G1841648 NA non-coding upstream 18534 20868153 ~ 20868472 (-)
G1841688 LOC106606791 non-coding upstream 77556 20927175 ~ 20928627 (-)
G1841696 NA non-coding upstream 94988 20944607 ~ 20944893 (-)
G1841704 NA non-coding upstream 106312 20955931 ~ 20956148 (-)
LOC110502408 LOC106606370 other downstream 1447459 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 1711158 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 1978329 18849389 ~ 18854222 (-)
LOC110502361 LOC106605890 other downstream 3101989 17725263 ~ 17781515 (-)
G1837980 NA other downstream 3113297 17709772 ~ 17719204 (-)
G1841694 NA other upstream 93688 20943307 ~ 20943615 (-)
G1841959 NA other upstream 495895 21345514 ~ 21371799 (-)
G1843946 NA other upstream 2333368 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 2365866 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 2495472 23344353 ~ 23358461 (-)

Expression


Co-expression Network