LOC110502449 (LOC106607006)


Basic Information

Item Value
gene id LOC110502449
gene name LOC106607006
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21523734 ~ 21528655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580473.2
TACGGAATACGGAGGATATTCAGTGACATAAGATCTGATCGTCTCAATGTCTCATTACTGAGCTGAGCTGTGTTggcagaggaaaggagggatAACTAGCTGGCCTGCTAAGTGGAAGAAGAGAGACTCTCTCACTGTCACGTTAACCATGGGCAAGGAAAAGCTTCACATCAACATTGTGGTGATCGGCCACGTGGACTCTGGAAAGTCCACCACCACTGGCCACCTGATCTACAAGTGCGGTGGCATTGACAAGAGGACCATCGAGAAGTTTGAGAAGGAGGCTGCTGAGATGGGGAAGGGCTCCTTTAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCAGAGAGGGAGCGTGGCATTACCATTGACATCTCACTGTGGAAGTTTGAGACCAGCAGGTACTACGTCACCATTATCGATGCTCCCGGACACAGGGACTTCATCAAGAACATGATTACTGGAACCTCCCAGGCGGACTGTGCAGTGCTGATCGTGGCGGCTGGCGTGGGGGAATTCGAGGCGGGCATCTCAAAGAACGGGCAGACCCGCGAGCACGCCCTCCTAGCCTACACCCTGGGGGTCAAGCAGCTGATCGTGGGAATCAATAAGATGGACTCCACTGAGCCCAACTACAGTCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAGCCCGGATATGGTAGCCTTTGTTCCTATCTCTGGCTGGAACGGAGACAACATGCTAGAGGCCAGTCCTAATATGACCTGGTTTAAGGGATGGAAGATCACCCGGAAGGATGGCAGCTCGTCCGGGACCACCCTGCTGGAAGCTCTGGATGCCATCCAGCCCCCGTCCCGCCCCACCGACAAGCCCCTCCGCCTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGCACAGTGCCCGTGGGGCGTGTGGAGACGGGTATGATCAAGCCAGGCATGGTGGTGACCTTTGCCCCTGTTAACGTGACAACCGAAGTGAAGTCTGTGGAGATGCACCACGAGGCTCTGACCGAAGCAATGCCCGGAGACAACGTGGGCTTCAACGTCAAGAACGTGTCCGTCAAAGATATTCGCCGTGGCAACGTGGCCGGAGACAGCAAGAACGACCCCCCAATGGAGGCAGCCGTCTTCACTGCTCAGGTGATCATCCTGAACCACCCAGGTCAGATCAGTGCTGGGTATGCCCCGGTGCTGGACTGCCACACCGCCCACATCGCTTGCAAGTTTGCTGAGCTCAAGGAGAAGATAGACCGTCGCTCAGGCAAGAAACTGGAGGACAACCCCAAGGCCCTGAAGTCTGGGGATGCCGCCATCGTGGATATGGTCCCGGGAAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCTCCACTGGgtcgTTTTGCAGTGCGTGACATGCGCCAGACAGTGGCAGTCGGGGTGATCAAGGGTGTGGAGAAGAAAGCTCCCTCCACTGGCAAGGTCACCAAGTCTGCCCAGAAGGCCCAGAAGACCAAATGAATGTTGTGCTGTGCTGCCGACTCCAGAGTCACCCATGGCAGGACAGTAGTCACCCAACCCCATCCCCCTATTGGCTGCTTCAACTCCATAGTCAAGGACTGGTTAATAATCACAATGCATCGCAAAAGTATCAgaaggaaagaaaaaaaaaagcctAGTCCTTAAGACAGTGTTTGTTCTTCCTCCCATTTCAAAGTGGCTATATTCATATGTATTTACGTTGTAATAGCACATTGCTAGTTTTAAACGTGTACTGTTAAATAAGTGAATGACCATGTTCCCCGTGTGTGAGATATTTTAACCATAGAGGGGCGCGGTTATAACTCACTCTTCACGCAGTCTGTTGTCTTGCTTTTAGTGTTTCTTTGTAAACTACCTGGTGCTTTATAGCAGCCTATGGTAATACAACTTAAAACTCTTATAAGTAGAACATTTGAGAAAAGTTAAGTGTATGTTGTATTATAGCTTTAAAGGAAACAAAAAAgctgaacattttacatttgtctCACTCTAGGCATACTGAGCCGACCAATTGTTGACTCTAAGCACTTTTAATTGGCGTTTTGTTAACTTTGCACTGGAAAACGTTTTAATTGGCAGAAGCTGTTGCATCTTATTCTGTTCAAGATGGCAGAAGCCCTGTTCATGACATTAAAGATGTTTCAACCAAC
>XM_021580472.2
GTATGGACTGATGGCGGCTCAATGTTGTCGCTAGCAAAACGCGGGACCTGTTATCGTAACTCAACTGTGCCTCAATGTAAGAAAACGGAGTTGAGTGTGCCTTATCTACTCGTTCCCTTGCTCTGATGCTCTGTCTAGGACGGTCTAGGAGGGGGTATGAGAATTGAGCGCAATTGCATAACCCCCTACTGTCTGGGATATAAGCGGATCAGCATCTCGTCACACACGGTCTTTCATTCAGCACCGAACTTGACTATCGTTTGAGCAGACTCTCTCACTGTCACGTTAACCATGGGCAAGGAAAAGCTTCACATCAACATTGTGGTGATCGGCCACGTGGACTCTGGAAAGTCCACCACCACTGGCCACCTGATCTACAAGTGCGGTGGCATTGACAAGAGGACCATCGAGAAGTTTGAGAAGGAGGCTGCTGAGATGGGGAAGGGCTCCTTTAAGTACGCCTGGGTGCTGGACAAGCTGAAGGCAGAGAGGGAGCGTGGCATTACCATTGACATCTCACTGTGGAAGTTTGAGACCAGCAGGTACTACGTCACCATTATCGATGCTCCCGGACACAGGGACTTCATCAAGAACATGATTACTGGAACCTCCCAGGCGGACTGTGCAGTGCTGATCGTGGCGGCTGGCGTGGGGGAATTCGAGGCGGGCATCTCAAAGAACGGGCAGACCCGCGAGCACGCCCTCCTAGCCTACACCCTGGGGGTCAAGCAGCTGATCGTGGGAATCAATAAGATGGACTCCACTGAGCCCAACTACAGTCAGAAGCGCTATGAGGAGATTGTGAAGGAAGTCAGCACCTACATCAAGAAGATTGGCTACAGCCCGGATATGGTAGCCTTTGTTCCTATCTCTGGCTGGAACGGAGACAACATGCTAGAGGCCAGTCCTAATATGACCTGGTTTAAGGGATGGAAGATCACCCGGAAGGATGGCAGCTCGTCCGGGACCACCCTGCTGGAAGCTCTGGATGCCATCCAGCCCCCGTCCCGCCCCACCGACAAGCCCCTCCGCCTGCCCCTTCAGGATGTCTACAAGATTGGAGGAATTGGCACAGTGCCCGTGGGGCGTGTGGAGACGGGTATGATCAAGCCAGGCATGGTGGTGACCTTTGCCCCTGTTAACGTGACAACCGAAGTGAAGTCTGTGGAGATGCACCACGAGGCTCTGACCGAAGCAATGCCCGGAGACAACGTGGGCTTCAACGTCAAGAACGTGTCCGTCAAAGATATTCGCCGTGGCAACGTGGCCGGAGACAGCAAGAACGACCCCCCAATGGAGGCAGCCGTCTTCACTGCTCAGGTGATCATCCTGAACCACCCAGGTCAGATCAGTGCTGGGTATGCCCCGGTGCTGGACTGCCACACCGCCCACATCGCTTGCAAGTTTGCTGAGCTCAAGGAGAAGATAGACCGTCGCTCAGGCAAGAAACTGGAGGACAACCCCAAGGCCCTGAAGTCTGGGGATGCCGCCATCGTGGATATGGTCCCGGGAAAGCCCATGTGTGTGGAGAGCTTCTCTGAGTACCCTCCACTGGgtcgTTTTGCAGTGCGTGACATGCGCCAGACAGTGGCAGTCGGGGTGATCAAGGGTGTGGAGAAGAAAGCTCCCTCCACTGGCAAGGTCACCAAGTCTGCCCAGAAGGCCCAGAAGACCAAATGAATGTTGTGCTGTGCTGCCGACTCCAGAGTCACCCATGGCAGGACAGTAGTCACCCAACCCCATCCCCCTATTGGCTGCTTCAACTCCATAGTCAAGGACTGGTTAATAATCACAATGCATCGCAAAAGTATCAgaaggaaagaaaaaaaaaagcctAGTCCTTAAGACAGTGTTTGTTCTTCCTCCCATTTCAAAGTGGCTATATTCATATGTATTTACGTTGTAATAGCACATTGCTAGTTTTAAACGTGTACTGTTAAATAAGTGAATGACCATGTTCCCCGTGTGTGAGATATTTTAACCATAGAGGGGCGCGGTTATAACTCACTCTTCACGCAGTCTGTTGTCTTGCTTTTAGTGTTTCTTTGTAAACTACCTGGTGCTTTATAGCAGCCTATGGTAATACAACTTAAAACTCTTATAAGTAGAACATTTGAGAAAAGTTAAGTGTATGTTGTATTATAGCTTTAAAGGAAACAAAAAAgctgaacattttacatttgtctCACTCTAGGCATACTGAGCCGACCAATTGTTGACTCTAAGCACTTTTAATTGGCGTTTTGTTAACTTTGCACTGGAAAACGTTTTAATTGGCAGAAGCTGTTGCATCTTATTCTGTTCAAGATGGCAGAAGCCCTGTTCATGACATTAAAGATGTTTCAACCAAC

Function

NR:

description
PREDICTED: elongation factor 1-alpha, somatic form-like

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K03231 EEF1A; elongation factor 1-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580473.2 False 2208 mRNA 0.51 8 21523734 21527540
XM_021580472.2 True 2351 mRNA 0.51 8 21523734 21528655

Neighbor

gene id symbol gene type direction distance location
LOC110502447 LOC106606998 coding downstream 6859 21512971 ~ 21516875 (-)
LOC110502445 NA coding downstream 219303 21298594 ~ 21304431 (-)
LOC110502444 LOC106606853 coding downstream 237803 21144640 ~ 21285931 (-)
LOC110502440 LOC106606775 coding downstream 674115 20832501 ~ 20849619 (-)
si:dkey-191g9.7 LOC106606765 coding downstream 708589 20810137 ~ 20815145 (-)
LOC110502450 LOC106607022 coding upstream 31345 21560000 ~ 21604318 (-)
LOC118943877 LOC106607043 coding upstream 131803 21660458 ~ 21663289 (-)
LOC110502452 LOC106607058 coding upstream 149545 21678200 ~ 21822311 (-)
LOC110502455 LOC106607083 coding upstream 1287602 22816257 ~ 22870825 (-)
LOC110503091 LOC106607091 coding upstream 1351132 22879787 ~ 22950292 (-)
G1842039 NA non-coding downstream 61575 21460956 ~ 21462159 (-)
G1842008 NA non-coding downstream 95847 21427462 ~ 21427887 (-)
G1841964 NA non-coding downstream 141473 21354681 ~ 21382261 (-)
G1841909 NA non-coding downstream 195448 21260825 ~ 21328286 (-)
G1841823 NA non-coding downstream 411316 21112208 ~ 21112418 (-)
G1842145 NA non-coding upstream 119591 21648246 ~ 21651632 (-)
G1842169 NA non-coding upstream 157426 21686081 ~ 21686343 (-)
G1842170 NA non-coding upstream 160641 21689296 ~ 21689536 (-)
G1842257 NA non-coding upstream 284995 21813650 ~ 21816666 (-)
G1842419 NA non-coding upstream 501802 22030457 ~ 22030728 (-)
G1841959 NA other downstream 151935 21345514 ~ 21371799 (-)
G1841694 NA other downstream 580119 20943307 ~ 20943615 (-)
LOC110502408 LOC106606370 other downstream 2138692 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 2402391 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2669562 18849389 ~ 18854222 (-)
G1843946 NA other upstream 1654332 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other upstream 1686830 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 other upstream 1816436 23344353 ~ 23358461 (-)
G1846858 NA other upstream 3911152 25439807 ~ 25440387 (-)
G1850441 NA other upstream 6546270 28074925 ~ 28078251 (-)

Expression


Co-expression Network