LOC118943877 (LOC106607043)


Basic Information

Item Value
gene id LOC118943877
gene name LOC106607043
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21660458 ~ 21663289 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036960401.1
GCTGGCTGTGGACTGCTCGATAACCACTTCCGCTTTTTTTCCACGCAGGTCAACATTTGCGTTTACCTAgaaagacagtaaagacattgtAGAAAGGTTTTTGTTGGTTAAAACTCACGTTTAGGAGATCGACAGGTTGAGATATTTATGGAGCATAATAATGGAGATACTTCTAGCTGGTCGATGCAGCGACGAATGGAAGGTTTGGTCAACAAACACATGGCAGACATAGCACTAGAAACGCTCCAACAGAGACTATCAGCTGTGTCCGACGAAATGAACCATCTTGCGGAACATGTCTCGAGACGCTCGGAGGATGTTCCCAAGTATGATATTCCAAGACGCACAGATGTAAACTTTGACGTTGAGTCACTGAGTGCAACATTTAGCACGGGTGGTGTTGGGGAAAAGTTGGCGATCCCCGGCACCTCATCATCAGCAGAGACGGCTGCCCAGCGTAAAATCATCTCCCTGCTGGTGGAGATTAAGGAGGAGCAGCAGAGACAGTGGGGCGTTTTGAGGCAGATGCAGGCCAGGGTTCAGGGCCAGAGCTTTCCGGTggtagaggaagaggtggaggctCTAGACATTGACATCCCACTGAGGACCATGGAGCAGCTAGATGACACAGAGAGGCACCTGGAGGATGCAGGAGCACAGAAGAGAATGGTGTCTCACCTGTCACGAATGGGTGGGGCCACGTTTGATGATGCGGTGCGAAGGCTCATGCAGGCAGTGCTATCTTTTGCTGTGGGCTCTGAGCTCAACTGGGTGGGCCGAGGCCAGAAAAGGAGCTTCAGAAACACCCGCCTCCAAGGGGTTCTCTTCTGTGCTCTGAAAAGAACCCCAGTGGGCAAAGAGGCCACACATCACCAGTTTGCAGACGTGGTGAAGAAGTGGCTGCGGTTCGCCCCAttcagacagggagggagtggtCGACGGCATTATAAACCACCTGTTGACTTCCTGTGTCCAAAGGAATGTGTAGATCTGCCTACACATCAGCCTACACATCCACAGTAACTCACAATCAGCTTATTACATATATTATATTGTTTAACATTTTAGTATTTTTTTCCTAAGTTTGTTACATTGCAAAAAATAAATGCTATTTGAATGTGAATACATGTGGTTTGGCCCATGTTACTTCATACAGGGCCAAACCTGTGATCTGCTCAAGTAACTTGGACCCCTGCATAAATCATGCAACGATGTAAATCACGtgccaaactcattccacggagggtaGAGTGTCTGCGtgttttcactcctcccttgtacttgattgatgaattaaggtcactaattagtaaataACTTCAGTCACCTGGTTTTCTAGGTATTAATTGAAAATAAATCataaaaacct

Function

NR:

description
ras and Rab interactor 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036960401.1 True 1369 mRNA 0.47 4 21660458 21663289

Neighbor

gene id symbol gene type direction distance location
LOC110502450 LOC106607022 coding downstream 56140 21560000 ~ 21604318 (-)
LOC110502449 LOC106607006 coding downstream 131803 21523734 ~ 21528655 (-)
LOC110502447 LOC106606998 coding downstream 143583 21512971 ~ 21516875 (-)
LOC110502445 NA coding downstream 356027 21298594 ~ 21304431 (-)
LOC110502444 LOC106606853 coding downstream 374527 21144640 ~ 21285931 (-)
LOC110502452 LOC106607058 coding upstream 14911 21678200 ~ 21822311 (-)
LOC110502455 LOC106607083 coding upstream 1152968 22816257 ~ 22870825 (-)
LOC110503091 LOC106607091 coding upstream 1216498 22879787 ~ 22950292 (-)
LOC110502457 LOC106605630 coding upstream 1335950 22999239 ~ 23006480 (-)
LOC110502461 LOC106607165 coding upstream 1550616 23213905 ~ 23218749 (-)
G1842145 NA non-coding downstream 8826 21648246 ~ 21651632 (-)
G1841929 NA non-coding downstream 58526 21301999 ~ 21601932 (-)
G1842039 NA non-coding downstream 198299 21460956 ~ 21462159 (-)
G1842008 NA non-coding downstream 232571 21427462 ~ 21427887 (-)
G1841964 NA non-coding downstream 278197 21354681 ~ 21382261 (-)
G1842169 NA non-coding upstream 22792 21686081 ~ 21686343 (-)
G1842170 NA non-coding upstream 26007 21689296 ~ 21689536 (-)
G1842257 NA non-coding upstream 150361 21813650 ~ 21816666 (-)
G1842419 NA non-coding upstream 367168 22030457 ~ 22030728 (-)
G1842441 NA non-coding upstream 387733 22051022 ~ 22051511 (-)
G1841959 NA other downstream 288659 21345514 ~ 21371799 (-)
G1841694 NA other downstream 716843 20943307 ~ 20943615 (-)
LOC110502408 LOC106606370 other downstream 2275416 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 2539115 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2806286 18849389 ~ 18854222 (-)
G1843946 NA other upstream 1519698 23182987 ~ 23233423 (-)
LOC110502462 LOC106607169 other upstream 1681802 23344353 ~ 23358461 (-)
G1846858 NA other upstream 3776518 25439807 ~ 25440387 (-)
G1850441 NA other upstream 6411636 28074925 ~ 28078251 (-)

Expression


Co-expression Network