LOC110502452 (LOC106607058)


Basic Information

Item Value
gene id LOC110502452
gene name LOC106607058
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 21678200 ~ 21822311 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580477.2
tctctcatacacaaacacactcacccctctacatcctcctTTCCGCGCTCTCTCTTGTACATCGCCAGCCTTGTTGCAGACTGTGTCCGGCGAAAACTGGCACAGAACTGACGCATCCATGGAGCGCTCCGTCCTATCACAACATCCACGACGCACAGCAACACTTCCGTGCGAAGTAATATAGAAGACAACATCGCAACCGACTCAAGATAGAATACCAACATCGTCTTTCACGCGCCGACAACCCACCTCTTCCATTGTCTAACTTTCCGAACCCCTCTTCCTCCCCGCTTCCTCCGACTCCTCCGCGTTCCCTGTCCGGGTTCCCAGAAACTCTGTCCCCGTGAAAACGTCTCCATGAATGGGATAGCCTTTGGCATGATGCCCGGGACCGTCCGGGTGCGGAGTAAGCCGCTTCAAGGGATGCTGAACCAGCGGAAGACCAAAGCTCAGCGGAAAAAGCGAAAGGAGTTGTTCGGTGGGCAGATGTTCTTCATGGGGGTGCTGCTCGCTCTTGTAAAGGGGCTCTCATGTTTGGTCGAGAAAGCAGGTTATGACATCTCCAGCCTTACTACTGAGGAGGGTGCCAGATGGGAGAGTCGGAGGCTACTACAGGAGTCCTGGGACAACGAGACAGACCTTCTGTTGGACCCCCCGTCCAAAAACTGCACTGAGCCAGcgtTACATGAGTTCCCCACAGACCTGTTCACCAACCAGGAGCGCACAGAGGGAGCGGTGGCCCTACACGTCCTGTTTGCCATGTACATGTTCTATGCACTGGCTCTGGTGTGTGACGACTACTTTGTTCCCTCTCTGGAGAAGATATGCGAGcgtCTACATCTTAGTGAGGATGTGGCAGGTGCAACCTTCATGGCAGCCGGCAGTTCAGCTCCTGAACTCTTCACCTCTGTTATCGGTGTGTTCATCACTAAAGGTGATGTGGGGGTGGGCACGATCGTGGGCTCAGCGGTCTTCAATATCCTCTGCATCATTGGAGTGTGTGGAATATTTGCTGGCCAGgcagtGCATCTGTCTCGTTGGTCTCTTATGAGAGACTCTATGTACTACACCCTATCCATCACTGCTCTTATCGTGTTCATATATGATGAAAAGGTTTCATGGTGGGAGTCTCTGACACTGGTTCTGATGTATTTCGGCTATATTTTGATAATGAAGTTTAACTCGAACATTGTGCATTTCCTGGAGAGGCGGAAGAAGAACTCGTCCAGCCTGGGGAACGGCACAGCCAGTAACGCTGACCTGGATGACAACTGTGATGCCAGCGCTGTCCTGCTGAAGAAAACTAACTTCCACAGAAAGCAGTCAGTGTTGATGGTAGATGAGTTGCTGTCAGCCTACCCCCACCAGCTGTCCTTCTCTGAAGCCGGCATGAGGATCATGATCACCAGCCACTTCTCCCCTCGCACACGCCTCTCCATGGCCTCACGCATGCTCATCACTGAGAGACAGCGTCTGATTAGTACCCGGCCGTTCACTAACGGAGACTCAGAGGTCACAGTGAAGGTCGGCAGTAGACGGGGCCTGGAGAACGGACTGGGCGGGCCTGAAAGGGGAGTCAAAGGTCGCCGTGGTCACCATGGAGAGGACGACAGGGGAGATGTGGAGGCCGGCAACGAGACTGAAAACGAGAACGAAGACAATGAGAATAATGAGaacgatgaagaggaggaggacgtaGGGGAGGGACCTTTTGTGCCCTTTCACGTCCCAGctGGGTGCTGTAATAAGATCAAGTGGCTGTTGGCCTGGCCTCTGTGCCTGCTGTTGTTCTTCACGGTGCCTAACTGTGCCAACACTCGCTGGGAGAGATGGTTCATGGTCTCCTTCGTCACTTCCACCCTCTGGATTGCTGGTTTTTCCTATGTCATGGTCTGGATGGTGACAGTGATCGGATTTACTCTCGGTATCCCCGACGTCATCATGGGCATCACCTTCCTGGCAGCTGGCACCAGTGTCCCTGATTGCATGGCCAGTCTTATAGTGGCACGGCAAGGTTTTGGGGACATGGCTGTGTCTAACTCTATAGGCAGCAATGTGTTTGATATCCTTATTGGACTGGGCCTTCCCTGGGCCCTGCAGACTCTTGCCATCAACTACGGCTCCTACATTAAACTGAACAGCAAAGGGCTCATCTTCTCTGTGGGACTTCTGTTGGGGTCTGTGTTCCTCACAGTCCTGGGGGTACATCTGAATGGGTGGAAACTGGACCGTCGTTTGGGCCTGGTGTGTCTGCTCATGTACTGCATCTTTCTCTGCTTCTCCATCCTCATTGAGTACAACGTCTTCACCTTTGTCAACCTGCCCACCTGCAGAGACCGCTGAGACCCAGTTGTcactctcccttctctttctcctccccatcctcctccactctccaggAAATGGTCCGGCTTGGGAGGGATCTGTCTGCACCTCagatatttgtattattattattttctttatGGTCAGTGCAATagggagtagtgtgtgtgtgtgtgtggtttaaagATGAGATAAACTGGGCACACATGCAGGAGCACAAACTGACTTGTAAAAAGCTTTCACACAGGACGTGTGAACAAAGCTTTTTTTGTCGACTATTGCCTACTTTGATGTGAAGATTTTTATTTGTTTAGGACTTTTGTAAAGGTGTCTGAAACTGCATTATAGTCTACCGTGTGATTTTGCTGACAATTTCTAATGTAATGTTTATTAGCTGCTAACTGGCTTTGATGAAAGCCGGTCTTATACGAGTCTATAATGTGTACTGGAATAGTGTTGTTTGAACAATGTTAATGTTTCCCGCTTTGTAAGTACATGCAGGCAGATATtctatttattaatttattgaatgttatttattttaaatccAAACCAACCCGGTTGGTCTTGAAGATGAGCTAATTTTGGAGATACTGTCTGTAGAGAGTAGTGACACCAACAACCCCTTGGCATGTTATGAGACTCCAGTCTAAAGTCACTTTTAGGGGAAACAACCTTTCAACATTCCTTTGACTCTTGCAAAAGAGGAATCTCTACTAAAAGTATTCTGAGCATTTACTCTATGACGGACATGATTTAGATCGTCACACGAAGAAAATGCATCCTTAGCAAAGTCAAACCTATTCAGTGAGACTGCACTGAAGTATATCATATGTGGTGTCTGTCCAAGGTGGGAGACGGTCTCTGTTTCAATGACAATGAGTGTCCCTACTTGCTGATTATTATGGCAATCTGGTCAAATGAAGCAAACTTTGTGAAACTGTAAACTCCTTTTTTCCACAAATGGAGCTCAAGAGAATGATATGTGCTGCCACATAGGGGCACAACCATGAACTACAGCACAGTATTGGATTCTTACAGACATTTTCTTGTTCCAAGTAACTTTTTACCAAATGTACATTGCCTAGATGGACTTCCTGTATAAAGGATGGATTTCCTGTTCCACCGACACACAGAGGAAATTAGGCATTTCTGTACTAATGAGTACTCCCAGTGTTATGATTCATAAAGGTAGagatgcactttaaataaagcaTCTGAACTTTGGCTGACCTGATGTTGGTTGAGCTGCGGTAATTCATTTTTTGTAATGCACAATGTTTAGATTTGTCCAGATGGTAGATTGTGCTACATTTAAATCAGTTCTTATGTCCTTTACGCCTTTAGTTTTGGGGATTATATCAGACGTAATCTGTAGACATGCAGGGGATTCTAGGACACTTGTTCAAGGCAAGCCAACCAGTCGTGCGTTGATTGAATGTTTGCTATGTTAGTAACACCATCgcacctttatttcacctttacaaaatatatttatcaCACCACTGTAAACACACAGCAGACTAAGGGCTCCATTCAATCCGCATCGCAGAAGTTCAGTTTTAAAGCgggattgaaatttaaaggcaatggtcCCGCTTTAGCAGAGTTTACATTAACGGTAAACGCTGCGTATAGTCGACTCAATCGGGAATTACTTTTACATTTCTGTTGCGAATCTGTAACGCTCCAGttttacagattgaatagagccctaaaacCATCTGTAAAAACTAAGATTTTTCATCTGgtagttttttttcttcataaatGCAAATAACACACATTTAttggatgaaaaaaaaaaaattgctttacAAACTGCTCTGAATGACATCTTGTGAACACTCATTTTATGGACCAATAACACAATATCTCAAATACGTAAAtgatgattaaaaaaaaagtCTCAATGTACAAAGTATTAGGGTTgcatttattttgaagaatgtttatcgtttgtttttttgttcataTATTTATTTGTCTTGGGAAATGTGTAGAGACGGAGCACAACTCTAATGTCAAAGGAAAACAGggtttttaaaatgtaaaatcaTTTATAATGCAATAATGATGAGCTTTACAATGTAAATATGTTGTTTCTTTTCATTTGATTGAAGGCACATTTCTAGATGGTATGTACAGTTGCACATCCCTCTGTCAAGAGAGTAAAATGTATCTTGTAGGGCAGACTAAAGCTAAGTGGTTTACAGAAGTCTGCACTGGAAGCTTGATATGAAAAGTTACTTATCTACATATCTACCAAGCCTATAAGTCAAAGACTCCTAACTAGTTCTAATTGGCCAATATCATACAAATATCCCCATGCAGCATTCAATACATTAAGTTGAAAAGATATCTTCAGTGGCACATCTAACTGAAATGTTAACCAGTGACATATTCATCCTTAGCCATAATACCATTGACAAATATGGTCAgatgtcatgttgtgctgctgttcATTTATCCCTGGTTTTGATGAGGATTATAATCTGAAAACAGGTACTAtacaacacaggaggttggtggcaccttcattggggaggcAGGGTTCGTtttaatggctggagcagaattggTGGAATGATATCACAtatcaaacatggtttccatgtgtttgatgccattccatttgagCCATTCcgaccattattatgagctgtttctcccccccccccccccccccaacttctATACCACCATGTGCTTGAAATTCACCAAACTATCACCAAGACTCATATCTGCAGGTGAGCGGTCTTGAAGAAAGGAATATTTTaatattttgtgaagttcacatGGTGATATATTGCTGatgtacatatatacatacatgtaaatgtatttatatattttgtcttAATCTGTATATTTGTTCCATATATTTTCATAGATATGATCTTAGGTCCCCCTTGGTACCCTCCTTAGtcctttgttttgttgtgttTGAGATTTTGATATCACCTTGTCCTTTGTTAACTTGCATGGATAtattttaatataatacattatttaATGGTAATTCTAATGTAATTTGAATCAGAATGATACATATTAAAGATGGCACTAAACTTGGCTGTTGAACTGGACCTCCTAGATGACTGCATGTTGTTTCTGATAGGATTGCTAAGTTTGATGATGTAATGTTAATCAAATAACCTGAAGTATGCCTCCGGAACAGGGAGATCAAAACAGAATGGTTTACTTTGTGTGCCGATGTTTCAGACGTAATTTAGAATACTTTTGGTACTTCCGCATAAATAAAGTATATTTGCTTAAGGTAA

Function

NR:

description
sodium/potassium/calcium exchanger 3-like

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13751 SLC24A3, NCKX3; solute carrier family 24 (sodium/potassium/calcium exchanger), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580477.2 True 5609 mRNA 0.44 17 21678200 21822311

Neighbor

gene id symbol gene type direction distance location
LOC118943877 LOC106607043 coding downstream 14911 21660458 ~ 21663289 (-)
LOC110502450 LOC106607022 coding downstream 73882 21560000 ~ 21604318 (-)
LOC110502449 LOC106607006 coding downstream 149545 21523734 ~ 21528655 (-)
LOC110502447 LOC106606998 coding downstream 161325 21512971 ~ 21516875 (-)
LOC110502445 NA coding downstream 373769 21298594 ~ 21304431 (-)
LOC110502455 LOC106607083 coding upstream 993946 22816257 ~ 22870825 (-)
LOC110503091 LOC106607091 coding upstream 1057476 22879787 ~ 22950292 (-)
LOC110502457 LOC106605630 coding upstream 1176928 22999239 ~ 23006480 (-)
LOC110502461 LOC106607165 coding upstream 1391594 23213905 ~ 23218749 (-)
LOC110502462 LOC106607169 coding upstream 1522042 23344353 ~ 23358461 (-)
G1842145 NA non-coding downstream 26568 21648246 ~ 21651632 (-)
G1841929 NA non-coding downstream 76268 21301999 ~ 21601932 (-)
G1842419 NA non-coding upstream 208146 22030457 ~ 22030728 (-)
G1842441 NA non-coding upstream 228711 22051022 ~ 22051511 (-)
G1842451 NA non-coding upstream 238107 22060418 ~ 22060673 (-)
G1842458 NA non-coding upstream 243786 22066097 ~ 22066393 (-)
G1842462 NA non-coding upstream 250780 22073091 ~ 22073341 (-)
G1841959 NA other downstream 306401 21345514 ~ 21371799 (-)
G1841694 NA other downstream 734585 20943307 ~ 20943615 (-)
LOC110502408 LOC106606370 other downstream 2293158 19261070 ~ 19385465 (-)
si:dkey-51a16.9 LOC106576688 other downstream 2556857 19111958 ~ 19145332 (-)
LOC110502394 LOC106606249 other downstream 2824028 18849389 ~ 18854222 (-)
G1843946 NA other upstream 1360676 23182987 ~ 23233423 (-)
G1846858 NA other upstream 3617496 25439807 ~ 25440387 (-)
G1850441 NA other upstream 6252614 28074925 ~ 28078251 (-)

Expression


Co-expression Network