LOC118943883


Basic Information

Item Value
gene id LOC118943883
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 23246034 ~ 23247645 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039207.1
CCCGACGTCCGgtgcgctatcgactgtgccgcaaaagcatgctatGTGCTTCGAAAGGACagtgtagctaacaaattgtcagccaacataatgtGTAAGGTAATTTATTGggaaagtcattactttattacatggAGGAAGGAGCAAGCTACCCCTCGGTCTGTGACGCCTCATCATTCTGCTCCTGAGTGGCTCACTTGTGAGCAGTGCTGGCAGGATATGGCAGCAACTTCGGTTGTGGGTCAAGAGTTCTGCATACAGTATCACGTTTGTATGAATGTGTGATTATTCACAGGCAAGTTGTTATATGCTATGGAGGTACATTTGTGTATTTTTGTCGAGAGCAAAAcgttttttattttcaatcaaaaataattgttctgaaagcaaCTTTTTTCTGACACAAATGAAGTCAAAGTGGACACCTAtgaagatggcatctcagagaGCGAGCAGACCAAGGGGTCGAAAATGTAGATATAGCCAGATGTTCACTGTCCGAGGAACAGGCTGTGGAAGCTTTTTTGCtggcaaaagtgtccataaccagaggtaattaaactgttcttttttcttttctccatctctgcctgtcttgttgtacatggaacctgtctcacatgcattCATTTAAAAATCcttaagatgtcagctgctaattttcagatttacaccacataaacacagccattttcactggactatctgttgctgccaagtcatgatttCCCTGAGGGTAAGCCTTGcaataaccaagtggtgagacacatagccttctatatttaaatgtttcaggtacactctgataggtgtctgcgtcacatactgtatcttctattgacattatcttctattgtttgtcctcatgtgtctgtttttcagtaTAAAGTACTCTGGAGCCACCTattgtggacaccaggtatgttttgatgtgagagacgAAGCCAGTtccgtcatcgccacctcacccgtCATCTTAAGATAACCTTCTGGGCCAACTGGGgacccaaggctggttaggagacaccgcaATTGTGATGAACTGGTAGCACTGTaattagggtagcactgtaaatcatgaatcatatgctgtctgccgctgttcttacctctttccctttctatcatctacacctctctccccacctcgtctt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039207.1 True 1154 mRNA 0.43 3 23246034 23247645

Neighbor

gene id symbol gene type direction distance location
LOC110502460 LOC106607150 coding upstream 38669 23153198 ~ 23207365 (+)
LOC110502459 LOC106607144 coding upstream 180291 23028909 ~ 23065743 (+)
LOC118943856 NA coding upstream 267432 22971449 ~ 22980249 (+)
LOC110502456 NA coding upstream 276042 22963000 ~ 22969992 (+)
LOC110503057 NA coding upstream 452614 22783934 ~ 22793564 (+)
LOC110502463 LOC106607177 coding downstream 34446 23282091 ~ 23344137 (+)
LOC118943845 NA coding downstream 66172 23296397 ~ 23316350 (+)
LOC110502464 LOC106607182 coding downstream 206437 23454082 ~ 23732901 (+)
LOC110502469 LOC106607213 coding downstream 830263 24077908 ~ 24111417 (+)
LOC110502471 NA coding downstream 902390 24150035 ~ 24166011 (+)
G1843987 NA non-coding upstream 1213 23244612 ~ 23244821 (+)
G1843909 NA non-coding upstream 12589 23183029 ~ 23233445 (+)
G1843889 NA non-coding upstream 96051 23149763 ~ 23149983 (+)
G1843886 NA non-coding upstream 98055 23147777 ~ 23147979 (+)
G1843877 NA non-coding upstream 107458 23138362 ~ 23138576 (+)
G1843992 NA non-coding downstream 190 23247835 ~ 23248626 (+)
G1844013 NA non-coding downstream 14719 23262364 ~ 23262576 (+)
G1844026 NA non-coding downstream 22261 23269906 ~ 23270139 (+)
G1844083 LOC106607169 non-coding downstream 102733 23350378 ~ 23350613 (+)
G1840558 fbxo28 other upstream 2460831 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 2729148 20358591 ~ 20516930 (+)
G1839872 NA other upstream 3181047 20062064 ~ 20064987 (+)
LOC110502420 slc18a2 other upstream 3206094 20037044 ~ 20058237 (+)
G1839383 NA other upstream 3723022 19522264 ~ 19523012 (+)
G1844044 LOC106607169 other downstream 97399 23345044 ~ 23346489 (+)
G1845108 NA other downstream 1078619 24326264 ~ 24354246 (+)
G1849208 LOC106607606 other downstream 4026693 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 4742629 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 4754230 28001291 ~ 28078254 (+)

Expression


Co-expression Network