XLOC_037393 (ppp1r1c)


Basic Information

Item Value
gene id XLOC_037393
gene name ppp1r1c
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 44430705 ~ 44489978 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073573
taaaaatccatAAATGAAGTGCCAGCGTGATCGAGCGTGTTATACATTATAAAGAACATTCTCTTGTCTCGCAGTTTACCCGTGTCTGCGGACAGAAAAATCCGGCCATGTGATGCAGAAAACTGCCGACAGCATCCTGAATCAGGATCATAAATAATGGAGGAGCATCAGCAGGTCCCGGTGGGGGCTTATATTGCATTGCTCTGAGTCTCGCTAATGAtagtgagagagaaaaagagagagggagggatCTGAGCAGGTCCCGGAGCAGTCGGAGAACTCACACTGAGAAAAACCTGCAGTCATCTCTGCCGCTGGGACGTTTATGGGACACTGCGAAGTGAGTGGGACAGCATGGATGGATGTGGGAAGGACAGACTGGTTGTTTGTTCTGCTGTTTGTCTCTGTGGCTGATTtttttcatctctctctctctctttctctctctctctctgtgtgtggaGTAAAGGAAGGCGGGATATACAGGAGGGAGAGGAAATCACTGATAAATAGGGTCCAGTTAGTCTCCATCTCTCTCCGACAGTTCTCTCGTTCAGCATGGAGCCCAACAGCCCCAAGAAGATTCAGTTTGCCGTTCCACTTTTCCAGAGCCAGTTGGATCCCCAGGCGGCCGAGCATATTCGCAAGCGCAGACCTACTCCAGCCACACTGGTCATTTACAATGAGCCCAGTGCCTCAGGAGATGACAAGCAGTCTACAGGCCATCAAACAGAGGCCCAGAACGCGCAGCTTTCTCCAGCCCAGAGGAAACAGAGCGTCTACACACCGCCCACCATGAGAGAGCTGCAGCTGGTGGTGGAGCAGCACTTTCAGAGGCAGGAGCAGCAGGAGACGGGGCTTTCTGACAGCCCTGACACGCCCAGTCCAATCACAACACAGCATTTTGCCACCGAAGCTCAGTGGGCCAATCACAACAGCTCAGAGCCCAATGGCAATCAGTCTTATGTCAGTACTGAGGGGCAGCCAGGCAGCAGTGGGGCCGGGGGAAACACAGCAGAAAGCTCAGGAAGCGAGCAGAAAAACTTGAGCAGTCCTTCATCTGTCTCTCGATAGCCGTAATAATGATCGTGCCCACCGTAAACCTTCCCAAACATTTACTGTTCCCTCACTCTCTGGACTCTGAATAATGAAGACACGCTTTCTCTAAACTCCTGCATTCTTCTGCATTTCTGGCCTCTTTCAGTTCATTTCCAGTGATGATGACCTTTCCTTTAGAGGGTTTTATTTGTGTGAAATGTAATGCCTGTTCTTCACTTTGAAATCTGTACTCAATTGATCTTCCCTGTTGGTTTTTCTATTTGATAAAAACAGCAtttgaaatatttacagtatggGTATCTGTGGGATCAGAAATGCGGTGGCGTATTTTTGGGGCTCTTTCAGATCAATTGTGATGTtagattatttataaatatgttggTTCTTTTCTGATagagacaataaaataaatgatttttggagcttgaaataaaaaaagaaaacaaaaccagGAATGATGAACATATTTTTGAATTAGTGCTTTTTATCCAACACTACTGTACATTCAGGTGTGTAAATGAAGATTTATTGTAGCATCATGAGAGTCAAAGGTGAAGCACATTATTTATGTGCTGACTAGTGATCAACAATGTTGAAAAAAGGGGGGAATTATTGAGTAATATCacattatttagttttaaatcaaTCTTTTTGGTAAAGATGTCACCGATATTAAGATTTTAGAAGAGGCATGTTTTAAATATGATACCTGTCCTATTGTTTGTATTATCAAAAACTCAACATTTCACCTTTAAGAAACAAGCTTATATAATCTTCGagctgagtgtgtgtgcgtgtgtgcatgtaatgttagcctgatctcacaaggaaatgtgactattttatattttatcagtttagtgtctaatttgtttaagttcagttgtatgaaaacgttcaatttttaaaaggaggcgtggcaccaaatcccacccctaacccaaCCGTTAATGGTgaagagcaaatcatactaaattgtatgattgtatgaattagccactaaatcagaaatgcacaaattgccatgagatataGCATTGGTAAAGTCGCTATCAACCCTGTCAACCTTTGATCTTTAGTAGGGTCccgtgaatttatttttatataattttattttatttttttaatttatttgtgtgttggttttattttaatattaggttTTTATGCTTCAAATTTTTgtccaattatttttattttttttctggactCCACTTCAATAGTTACATTTAACTGTATTAATCGAAAATTACACATTATTTGTACAGCTTATGCAGCTGCAATTTTAATATTAgtagtacattttattttgttcttaaaTTGTGCTTTATTCCtggtaaaatgtaaaacaaagaaaattcttggtaaagaaacaaattacatttccttgttttaatgttattactattctttattattattatcattattattattattattattattattattattattattattattagtgcttttattattattattattattattattattattattgctgttttgttattattattattaatattattatcatcattattattgctgctattatt
>TCONS_00073574
GCAGTCGGAGAACTCACACTGAGAAAAACCTGCAGTCATCTCTGCCGCTGGGACGTTTATGGGACACTGCGAAGAAGGCGGGATATACAGGAGGGAGAGGAAATCACTGATAAATAGGGTCCAGTTAGTCTCCATCTCTCTCCGACAGTTCTCTCGTTCAGCATGGAGCCCAACAGCCCCAAGAAGATTCAGTTTGCCGTTCCACTTTTCCAGAGCCAGTTGGATCCCCAGGCGGCCGAGCATATTCGCAAGCGCAGACCTACTCCAGCCACACTGGTCATTTACAATGAGCCCAGTGCCTCAGGAGATGACAAGCAGTCTACAGGCCATCAAACAGAGGCCCAGAACGCGCAGCTTTCTCCAGCCCAGAGGAAACAGAGCGTCTACACACCGCCCACCATGAGAGGTAAAGATCCAGCATCTGCACTGATGTGACGTTTCTGACTCTTGCGTAACCAGAGCATCTGACTCACTCCTCTTATGCAGTACTTCATGAGCTGG
>TCONS_00073575
AGTCGGAGAACTCACACTGAGAAAAACCTGCAGTCATCTCTGCCGCTGGGACGTTTATGGGACACTGCGAAGAAGGCGGGATATACAGGAGGGAGAGGAAATCACTGATAAATAGGGTCCAGTTAGTCTCCATCTCTCTCCGACAGTTCTCTCGTTCAGCATGGAGCCCAACAGCCCCAAGAAGATTCAGTTTGCCGTTCCACTTTTCCAGAGCCAGTTGGATCCCCAGGCGGCCGAGCATATTCGCAAGCGCAGACCTACTCCAGCCACACTGGTCATTTACAATGAGCCCAGTGCCTCAGGAGATGACAAGCAGTCTACAGGCCATCAAACAGAGGCCCAGAACGCGCAGCTTTCTCCAGCCCAGAGGAAACAGAGCGTCTACACACCGCCCACCATGAGAGAGCTGCAGCTGGTGGTGGAGCAGCACTTTCAGAGGCAGGAGCAGCAGGAGACGGGGCTTTCTGACAGCCCTGACACGCCCAGTCCAATCACAACACAGCATTTTGCCACCGAAGCTCAGTGGGCCAATCACAACAGCTCAGAGCCCAATGGCAATCAGTCTTATGTCAGTACTGAGGGGCAGCCAGGCAGCAGTGGGGCCGGGGGAAACACAGCAGAAAGCTCAGGAAGCGAGCAGAAAAACTTGAGCAGTCCTTCATCTGTCTCTCGATAGCCGTAATAATGATCGTGCCCACCGTAAACCTTCCCAAACATTTACTGTTCCCTCACTCTCTGGACTCTGAATAATGAAGACACGCTTTCTCTAAACTCCTGCATTCTTCTGCATTTCTGGCCTCTTTCAGTTCATTTCCAGTGATGATGACCTTTCCTTTAGAGGGTTTTATTTGTGTGAAATGTAATGCCTGTTCTTCACTTTGAAATCTGTACTCAATTGATCTTCCCTGTTGGTTTTTCTATTTGATAAAAACAGCAtttgaaatatttacagtatggGTATCTGTGGGATCAGAAATGCGGTGGCGTATTTTTGGGGCTCTTTCAGATCAATTGTGATGTtagattatttataaatatgttggTTCTTTTCTGATagagacaataaaataaatgatttttggagcttgaaataaaaaaagaaaacaaaa
>TCONS_00073576
GAAGGCGGGATATACAGGAGGGAGAGGAAATCACTGATAAATAGGGTCCAGTTAGTCTCCATCTCTCTCCGACAGTTCTCTCGTTCAGCATGGAGCCCAACAGCCCCAAGAAGATTCAGTTTGCCGTTCCACTTTTCCAGAGCCAGTTGGATCCCCAGGCGGCCGAGCATATTCGCAAGCGCAGACCTACTCCAGCCACACTGGTCATTTACAATGAGCCCAGTGCCTCAGGAGATGACAAGCAGTCTACAGGCCATCAAACAGAGGCCCAGAACGCGCAGCTTTCTCCAGCCCAGAGGAAACAGAGCGTCTACACACCGCCCACCATGAGAGGTAAAGAGCACTACAGCGACAGCCAACAGGAGGACAGAGAGAGTCATCAACCTACTAGACTCTCTCAGAAACACCTGGACACACTGTCAGAAGAACCTGGTGATCTTTCACCTCGACGCAAAGACACACCGTACCTGCACCAGCCACCATTCATTCCCGGCGTAAAGATGCTGAAAAACCAGACAGACCCTTCGTCACTTCTCCAGGAGGAAGAGGAGAGCAGCGGTGAACTGAAAAACAGCCAGACAGAGTAACACAACTGATATCAAGAGAATCATGATTTGTAGTTTaactttgttctgttttttttaagtaactttgtTTTTCAGTATTAAAAATGTACGTATGTGCAAAATAAATAcagatgtaattttttttttttttactccaccGTGGGGTCCAAAACGAACTTTATACAATAcagatattaaacaaaaaaagaataataaaatatacattgttTACTAGGCATTTTTGCTAGTTATTTTAGACCCCACTGCACATTCTTTGGTATTATTTTATTTCCTAATGTTAATTTCATTTTGTTGTAATTTGAAACAAAAATTGATTAggatttattaatatattgagGGATTGTGAAACCTATCACGTCCtgccacattattattattactattactagtattattaatattgttactaCAATATTCTGTGACTGCCTCGTATGGAAAGAGCTTGAGGTTAAGATGACACTTTCTCAGACAGAAGTAATATTTTTGTAGGTTTGTGGCTGTTTTGTATGCAGACGTGACTCTGAAGTCTCACACAGCTGTTGTGCAGCCCACCTGCTCTCATATGTGAGCATCAAACATGGACTTAAAGCTTCAGACATGccattacatttttaacaacacCCATTTTTCCTCGTGAAATAATctcattt

Function

symbol description
ppp1r1c Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in nervous system and trigeminal placode. Orthologous to human PPP1R1C (protein phosphatase 1 regulatory inhibitor subunit 1C).

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005737 cytoplasm cellular_component
GO:0004864 protein phosphatase inhibitor activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-040718-273 Predicted to enable protein phosphatase inhibitor activity. Predicted to be involved in intracellular signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Is expressed in nervous system and trigeminal placode. Orthologous to human PPP1R1C (protein phosphatase 1 regulatory inhibitor subunit 1C).

Ensembl:

ensembl_id ENSDARG00000038941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073573 False 2630 mRNA 0.38 6 44430705 44487210
TCONS_00073574 False 501 lncRNA 0.53 5 44430972 44469429
TCONS_00073575 False 1109 mRNA 0.47 7 44430974 44486087
TCONS_00073576 True 1237 mRNA 0.41 6 44431174 44489978

Neighbor

gene id symbol gene type direction distance location
XLOC_037392 itprid2 coding upstream 10325 44391254 ~ 44420380 (+)
XLOC_037391 itprid2 coding upstream 60848 44304980 ~ 44369857 (+)
XLOC_037390 itga4 coding upstream 342638 44034790 ~ 44088067 (+)
XLOC_037388 ube2e3 coding upstream 547438 43797902 ~ 43883267 (+)
XLOC_037389 BX649590.1 coding upstream 575095 43855495 ~ 43855610 (+)
XLOC_037395 nckap1 coding downstream 231830 44721808 ~ 44825419 (+)
XLOC_037396 frzb coding downstream 342054 44832032 ~ 44839148 (+)
XLOC_037397 BX571855.1 coding downstream 442197 44932175 ~ 44932293 (+)
XLOC_037398 retsatl coding downstream 504236 44994214 ~ 44998722 (+)
XLOC_037399 NA coding downstream 549787 45039765 ~ 45044991 (+)
XLOC_037387 BX470133.1 non-coding upstream 655340 43775251 ~ 43775365 (+)
XLOC_037386 CU855879.1 non-coding upstream 1099194 43331395 ~ 43331511 (+)
XLOC_037385 NA non-coding upstream 1525083 42732199 ~ 42905622 (+)
XLOC_037383 NA non-coding upstream 1930421 42348958 ~ 42500284 (+)
XLOC_037400 BX510317.1 non-coding downstream 574177 45064155 ~ 45064269 (+)
XLOC_037401 NA non-coding downstream 622518 45112496 ~ 45122990 (+)
XLOC_037403 NA non-coding downstream 771406 45261384 ~ 45261761 (+)

Expression


Co-expression Network