LOC110502469 (LOC106607213)


Basic Information

Item Value
gene id LOC110502469
gene name LOC106607213
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24077908 ~ 24111417 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580503.2
CATGAGCTCTGATGTGTCCTTCCGCTGCCAACAAAAGAACTAGCTAGCCGACTACAAAAAAAACGGCAATCGGAAAAACGTACACTGTAAATCTTCTGCAATGAAACAGCTTTTCTAAGAattcacatgtatttatttaatacaaACGTTTTTATTTCTAGATCTATATATTTGCGGCGGTAGGATATATATATGTTAAACctctacatatatatttttttcctccgtTGGAAGCCATGATGGAAGCGTGAGAGAAACGCAAAAAGAAGATGCTTCCCGGGACATATGTCAAACGAGTCTGTGCAAATATTTGGTCTTTGTATAGCCATTATACATGCACATTGGAGCCTGACACTTTTTTGCGTGTATTTTGGCAATCCATCGGCGAAGATGTTGATTCGCTAGGAGGTTTTTGGATTTTTTAAAAAGTGGGTAGCTATTGCAGCTCGCTAGATGGCTAGCTAAGTCTGAGTGGATACGGTAACTAATTACTGCTGGGCTTTCCAAGGGCCGGTAGTCTTCAAATTCGAGCGAGCGCCGGAGAGTTATCTCCTCGCTGGTCGGTCAATCACGGCGGCTTCTGTAGATCAAGAGATTCGGACCGTCTTATGCCTTACGGTTAGGCGGGAGGATTATTCTATGTATTTTTCAAGGGGGAGTTGCAAGACAAATTCCAGTATTGGGAAAGTTTGGCCTGCGCGGAAGAGCAGAGCAAGGCCCGTCTCTTATGATCCAGAGAAAAAGCCATTCTAGCTTGCTAACGCGTTAATCCTACTCAAGACGACGACCACTGCTGGCTTGTCTCACTGCGAGGAAGGAGCTGCAAAATCAAAAAAGCAAAGGGCGATCGAGAGGCAAAGCCATTGCAAACCGAAGCAACGGCAGCTAGCTAACTTTTCATAATTTGAAACCCACAGACTCCTGTCACTAGCcagcaagctagttagctacaatGGCTGCGATAATAAAAGAAATGGTCAGCCGGAACAAAAGGAGATTCCAGGAGGATGGGTTCGACTTGGACTTAACGTATATCTATCCAAACATCATTGCTATGGGCTTTCCTGCAGAACGACTCGAAGGAGTGTACAGAAACAATATAGACGACGTTGTACGGTTTCTTGACTCAAAACATAAAAGCCATTATAAGATTTACAATCTTTGTGTAGAACGACACTATGATGCTGCCAAATTTAACTGCAGAGTTGCACAGTACCCCTTTGAAGACCACAATCCGCCTCAGCTAGAGCTCATCAAGCCCTTCTGTGAAGATCTGGACCAGTGGCTGAGCGAGGATGACAATCATGTGGCGGCCATCCACTGCAAGGCAGGGAAGGGCCGCACTGGGGTGATGATCTGCGCCTACCTCCTGCACCGCAGGAAGTTCCAAGAGCCCCAGGAGGCCCTCGACTTCTATGGGGAAGTGCGGACAAGGGACAAGAAGGGAGTGACAATCCCGAGCCAACGTCGCTATGTGTACTACTACAGCCACCTGCTGAAGAACAAGCTGGACTACAAGCCAGTGGCTCTGCTCTTCCATAAAATGGTTTTTGAGACGCTGCCAATGTTCAGCGGAGGCACCTGCAGGGACAGTACCATTAAAAACAGGAGCGAGCCGATCCCTCTGGGCTTCAAGAAAGGGAATTGGCATTGGGATCCTCAGTTTGTGGTGTATCAACTTAAAGTCAAGATCCACACATCCAACCCGGCTCACACACGGAGGGAAGAAAAGCACATGTTATTTGAGTTTCCCCAACCGCTGCCCGTGTGTGGAGACATCAAAGTGGAGTTCTTTCACAAGCAAAACAAAATGATGAAGAAGGATAAGATGTTCCACTTCTGGGTTAACACCTTCTTCATTCCCGGGCCATCGGAGGAGAGCATGGAGAAGGTGGAGAACGGgtcggtggtggtggtggtgaacgACATGGAAAAGGTCCAGAACCAGCCCCCGGGCGCCCCCCCTCCCCATGCCCAGCCCCCCCAGAGCACCAAGCGCAGGGACAGCGGCAAAGACAGTGACGGGGACTACCTCATCCTCGCGCTGACCAAGAATGACCTGGACAAGGCCAACAAAGACAAAGCTAACCGCTACTTCTCACCTAATTTCAAGGTGAAGTTGTATTTCACAAAAACCGTGGAAGATTCTTTGAATTCCGAGGTGAGCACTTCGACATCCGTCACTCCGGACGTTAGCGACAATGAGCCTGACCATTATCGATATTCCGACACCACTGACTCTGATCCGGAAAATGAACCTTTTGACGAGGAACAGCACACGCAAATCACAAAAGTGTGAACTTTTTTTATCAGGAAAAAGATGTACACCAGAGGAAAAAAAGGAGAGAACTTGAATATGAACTCAAAAGAAGAACCTTTGTCCCCCTACCTCCCCCAAAATGGCAATAGAGCATCATCATGTCAAATGCCAATTTTAGTTTAAAAAATTATTATCCTGACCaatatgtttttattattttctttGGCGCGGCCGTGTACCATGCGCAAAGTATTGACACTGTTGGCCCATGGGGAAAggtgcttgtgtatgtgtgtgtatgtgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatata
>XM_021580504.2
CATGAGCTCTGATGTGTCCTTCCGCTGCCAACAAAAGAACTAGCTAGCCGACTACAAAAAAAACGGCAATCGGAAAAACGTACACTGTAAATCTTCTGCAATGAAACAGCTTTTCTAAGAattcacatgtatttatttaatacaaACGTTTTTATTTCTAGATCTATATATTTGCGGCGGTAGGATATATATATGTTAAACctctacatatatatttttttcctccgtTGGAAGCCATGATGGAAGCGTGAGAGAAACGCAAAAAGAAGATGCTTCCCGGGACATATGTCAAACGAGTCTGTGCAAATATTTGGTCTTTGTATAGCCATTATACATGCACATTGGAGCCTGACACTTTTTTGCGTGTATTTTGGCAATCCATCGGCGAAGATGTTGATTCGCTAGGAGGTTTTTGGATTTTTTAAAAAGTGGGTAGCTATTGCAGCTCGCTAGATGGCTAGCTAAGTCTGAGTGGATACGGTAACTAATTACTGCTGGGCTTTCCAAGGGCCGGTAGTCTTCAAATTCGAGCGAGCGCCGGAGAGTTATCTCCTCGCTGGTCGGTCAATCACGGCGGCTTCTGTAGATCAAGAGATTCGGACCGTCTTATGCCTTACGGTTAGGCGGGAGGATTATTCTATGTATTTTTCAAGGGGGAGTTGCAAGACAAATTCCAGTATTGGGAAAGTTTGGCCTGCGCGGAAGAGCAGAGCAAGGCCCGTCTCTTATGATCCAGAGAAAAAGCCATTCTAGCTTGCTAACGCGTTAATCCTACTCAAGACGACGACCACTGCTGGCTTGTCTCACTGCGAGGAAGGAGCTGCAAAATCAAAAAAGCAAAGGGCGATCGAGAGGCAAAGCCATTGCAAACCGAAGCAACGGCAGCTAGCTAACTTTTCATAATTTGAAACCCACAGACTCCTGTCACTAGCcagcaagctagttagctacaatGGCTGCGATAATAAAAGAAATGGTCAGCCGGAACAAAAGGAGATTCCAGGAGGATGGGTTCGACTTGGACTTAACGTATATCTATCCAAACATCATTGCTATGGGCTTTCCTGCAGAACGACTCGAAGGAGTGTACAGAAACAATATAGACGACGTTGTACGGTTTCTTGACTCAAAACATAAAAGCCATTATAAGATTTACAATCTTTGTGTAGAACGACACTATGATGCTGCCAAATTTAACTGCAGAGTTGCACAGTACCCCTTTGAAGACCACAATCCGCCTCAGCTAGAGCTCATCAAGCCCTTCTGTGAAGATCTGGACCAGTGGCTGAGCGAGGATGACAATCATGTGGCGGCCATCCACTGCAAGGCAGGGAAGGGCCGCACTGGGGTGATGATCTGCGCCTACCTCCTGCACCGCAGGAAGTTCCAAGAGCCCCAGGAGGCCCTCGACTTCTATGGGGAAGTGCGGACAAGGGACAAGAAGGGAGTGACAATCCCGAGCCAACGTCGCTATGTGTACTACTACAGCCACCTGCTGAAGAACAAGCTGGACTACAAGCCAGTGGCTCTGCTCTTCCATAAAATGGTTTTTGAGACGCTGCCAATGTTCAGCGGAGGCACCTGCAATCCTCAGTTTGTGGTGTATCAACTTAAAGTCAAGATCCACACATCCAACCCGGCTCACACACGGAGGGAAGAAAAGCACATGTTATTTGAGTTTCCCCAACCGCTGCCCGTGTGTGGAGACATCAAAGTGGAGTTCTTTCACAAGCAAAACAAAATGATGAAGAAGGATAAGATGTTCCACTTCTGGGTTAACACCTTCTTCATTCCCGGGCCATCGGAGGAGAGCATGGAGAAGGTGGAGAACGGgtcggtggtggtggtggtgaacgACATGGAAAAGGTCCAGAACCAGCCCCCGGGCGCCCCCCCTCCCCATGCCCAGCCCCCCCAGAGCACCAAGCGCAGGGACAGCGGCAAAGACAGTGACGGGGACTACCTCATCCTCGCGCTGACCAAGAATGACCTGGACAAGGCCAACAAAGACAAAGCTAACCGCTACTTCTCACCTAATTTCAAGGTGAAGTTGTATTTCACAAAAACCGTGGAAGATTCTTTGAATTCCGAGGTGAGCACTTCGACATCCGTCACTCCGGACGTTAGCGACAATGAGCCTGACCATTATCGATATTCCGACACCACTGACTCTGATCCGGAAAATGAACCTTTTGACGAGGAACAGCACACGCAAATCACAAAAGTGTGAACTTTTTTTATCAGGAAAAAGATGTACACCAGAGGAAAAAAAGGAGAGAACTTGAATATGAACTCAAAAGAAGAACCTTTGTCCCCCTACCTCCCCCAAAATGGCAATAGAGCATCATCATGTCAAATGCCAATTTTAGTTTAAAAAATTATTATCCTGACCaatatgtttttattattttctttGGCGCGGCCGTGTACCATGCGCAAAGTATTGACACTGTTGGCCCATGGGGAAAggtgcttgtgtatgtgtgtgtatgtgtatatatatatgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatata

Function

NR:

description
phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN-like isoform X2

GO: NA

KEGG:

id description
K01110 PTEN; phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580503.2 False 2619 mRNA 0.46 10 24077908 24111415
XM_021580504.2 True 2552 mRNA 0.46 9 24077908 24111417

Neighbor

gene id symbol gene type direction distance location
LOC110502464 LOC106607182 coding upstream 345007 23454082 ~ 23732901 (+)
LOC110502463 LOC106607177 coding upstream 733771 23282091 ~ 23344137 (+)
LOC118943845 NA coding upstream 761558 23296397 ~ 23316350 (+)
LOC118943883 NA coding upstream 830263 23246034 ~ 23247645 (+)
LOC110502460 LOC106607150 coding upstream 870543 23153198 ~ 23207365 (+)
LOC110502471 NA coding downstream 38618 24150035 ~ 24166011 (+)
LOC110502473 itprip coding downstream 55170 24166587 ~ 24170976 (+)
LOC110502474 LOC106607224 coding downstream 83297 24194714 ~ 24284046 (+)
LOC110502476 LOC106605659 coding downstream 319225 24430642 ~ 24506556 (+)
LOC110502478 LOC106607248 coding downstream 590304 24701721 ~ 24731235 (+)
G1844945 NA non-coding upstream 46944 24023990 ~ 24030964 (+)
G1844846 NA non-coding upstream 212570 23864778 ~ 23865338 (+)
G1844845 NA non-coding upstream 214387 23863278 ~ 23863521 (+)
G1844844 NA non-coding upstream 215162 23862442 ~ 23862746 (+)
G1844843 NA non-coding upstream 215795 23861680 ~ 23862113 (+)
G1845005 NA non-coding downstream 21385 24132802 ~ 24133413 (+)
G1845015 gsto1 non-coding downstream 62745 24174162 ~ 24183919 (+)
G1845184 NA non-coding downstream 332763 24444180 ~ 24541764 (+)
G1845877 NA non-coding downstream 635341 24746758 ~ 24815551 (+)
G1846029 NA non-coding downstream 711608 24823025 ~ 24823287 (+)
G1844044 LOC106607169 other upstream 731419 23345044 ~ 23346489 (+)
G1840558 fbxo28 other upstream 3292705 20781865 ~ 20785203 (+)
LOC110502429 ttc27 other upstream 3561022 20358591 ~ 20516930 (+)
G1839872 NA other upstream 4012921 20062064 ~ 20064987 (+)
LOC110502420 slc18a2 other upstream 4037968 20037044 ~ 20058237 (+)
G1845108 NA other downstream 214847 24326264 ~ 24354246 (+)
G1849208 LOC106607606 other downstream 3162921 27274338 ~ 27276259 (+)
LOC110502527 LOC106607701 other downstream 3878857 27990245 ~ 27993189 (+)
LOC110502528 bic1a other downstream 3890458 28001291 ~ 28078254 (+)
LOC110502541 LOC106607837 other downstream 4386606 28497576 ~ 28571528 (+)

Expression


Co-expression Network