LOC110502475 (LOC106607228)


Basic Information

Item Value
gene id LOC110502475
gene name LOC106607228
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24292899 ~ 24361215 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580511.2
GATGCCGGCCAACGGGGGACATGAGTGTATTGCTGGCTATGCACATTAGTCAGCCGTAAAATGACAAAATAATAATAGGGCCATCTTGCGGCCGTTTGGGCTACTTGCGCGGTAGATAAAAGTAACTTGGCGGAGTTTTTCTGCATTTTCCAAAGCTGTGTAGGTCATCCATATTTCTTATaggctgtttccttcctctcaatGCATAACTTGTTTTTGGTCGGGCTAGGTTTGTTCATACGGTGATTTTTCGCGGACCTCAAAATTAGTTGGAATTCTCCTTCGTTGAAGATATCGATAGCGCTAATGGTAATTACTGAAGATTCACCTTATGTGATTCTACGCTGCGGTGCTGCTATTGTATCCGATCGGCTGGGACAGCCACTACTCTCACGGAGGGTTAAGTGTTAGGACTTCTGTGAACCCGAGAGAACGAAATCGTGAATTATCCGATTATGTTATGTTGACAGACAAGGAGCGCATGCCTCTGAATATTTTGTCTAACAAACCCAGAGAAGAGGAACTTGCCTTGTATTTAAAAACATGGGAGGTCAGATAACAAGAAATACCTTGTACGATTCTCTGGGTGGCTCCTTCCCCACCACGTCTCACCGCTGCCACCATAAGCCCACCAAGAGATGTCTGCCTATCCAGCAGTGTGGAGGCAGCAGGTCCTCCTTTCCACTGCTCTTCCACCCTAGTGCCAAGGGCTCCCAGATCGTCATGGACATGGCCCAGAGGACCGTCAAGAGACAGGCCAGTTTCTGCAACGCCATCACCTTCAGCAACCGGCCCATTGCCCTGTTCGAGCAGGTCCGCCTCAAGATCACTAAGAAGCAGTGCTGCTGGAGCGGAGCCCTGCGTCTGGGCTTCACCTCCAAGGACCCATCCCGCATCAACCCAGACAACCTGCCTAAGTACGCCTGCCCAGACCTTGTCTCACAGAACGGATTCTGGGCCAAGGCCCTGCCCGAGGAGCTGTCCAATGAGGGCAACATCATCTCATTCTGGGTGGACAAGAAGGGCCGGGTCTTCTACCGTATCATTGACTCTATCCCCATACTGTTCTTCTGCGGGGTCCATGCCTCCGAGCCACTCTGGGCTCTCATAGACGTCTACGGCCTGACACGAGGGGTCCAGCTACTGGACAGTGAGATGGTGCCTCTCGACTGCCTGCATCCTCACTCCTTCACCGTGACCCACCAGGCGTCCTTATGGCGGGACCCAGACGACCCTCGCCTTTCTATCAGACTGTGTGACCTTCGCCACCAGcacaaggaggaagaggagcgCCTGCACCCCCTTAGTTCCACCTCCTGTTCCATCCCCCAGAACTCCCTCAACTCCCAGCAGTGCTCCCTGCTCCCCTCGCTCCTTGACAGCGATCTCCACTTCCACCCACTCCGAGGTGCCAACGTCAAAGCCCTCGATGAGAACACGGTGACCCGGGGCGTGGAGCACCGCAGCGGTGATGAGAGGACCTTGGTGTTCACCAGCCGGCCACTGTGTTgtggagagagtgtgtttgtAAAAGTGACCAAGGCGGGTGGCACTCGTCTCGGGTCACTCTCCTACGGCGTGACGTCGTGCGACCCGGCCGGGCTTCGGCCCAATGACCTGCCATACAGCCCGGAGTCTCTGGTCGACCGCAAGGAATTCTGGGCGGTGTGTCGGGTAGGGACGCCCCTGCATAACAGTGATATCCTGTGTTTCGTGGTGAACGTGGAGGGGGAGGTATTTCTGAGCCTCAATGGGATCAACGCGGGGATGCAGGTGTGTGTGGACAACTCCAGGCCTCTATGGATGTTCTTTGGTCTGCATGGAGACGTTACACAACTCAGGATCCTAGGCTCGTCTTTGAATGCAGACCCTCAGGTGCCATCAATTCCCAGCTCCCCCTCCTGCACCCCTAACACCCCAACACTGCGCTGCAGCGACAGCTCCGAGCCCAACCTCAACTCCAATCTGAACATCAACCTCAACACCATTCTCAATGCCAGCTTCCCACCAGCCTTCAGCAGCTCCACAGGTACAACTCGCAGCTCTCCATTCTCCAGCCACCCAAAATCCTCCACTTTCCAAGTGTGCTCGGGCTCTTGGAGTGACGAGTGCACCATCTGTTATGAGAACGTAGTGGACACGGTGCTGTACGCCTGTGGTCACATGTGTCTCTGCTACGCCTGTGGCCTCAAACTGAAGAAGATGGCCAACGCCTGCTGTCCGATCTGCAGGAGGACTATCAAAGACATTATAAAGACCTACCGGAGCACGTAGGATCGGCTGTGTAACACAGTGGCTTATTCACCGAGATCAAAGAAAACATTTAGGCCTATCAGTGCATGTAGGGCTGACCTGTCTGTGTCACCTATGGCTCAGCTACAGGAGGTTTTTCATCAAAGACCACCAGAGACATACTGTAATTCAGTCTTATTGGAGCATGTAGGTTTGGCCGGTCTCAGTATGGCTCAGCAACACTGAGATTCAGCATCATCCAGTTGGCCCGTCAAAGATATCAGAAAACCATGTTGGGGCATAAAGGGCTGGCATTTCACCATGACCTGTCTACtgtacagtggaggctgctgagaggcaGACTGCTTAtactaatggctggaatggagtaaatggaatgacaTCAATTGGGGAGCTTTGACTTGTGGTAATGTTATGGAAACCATTTgtatgatgtatttgataccactccacctattctgctccagccattaccaccatcctgtcctccccaattaagttaCCATCAACCTCCTGTTCTACTGTACCAGGTATGTGATAGACCATTAAAGATATTATAACGATACACAGGAAGAGGCCATGCTGGCTTCCACTGTGTCACTATATCCCAGATACTGGATTGGACTCCGCAACCATGGAAGTGGACTTAACCAGGAGGGATCTGGCTCACTCACTGCAAAACAATCATCTTCTACCCCACTGGTGGTGGACAGTGATGCATGTTTTGTTGTATAGGCTCTGTACTCCAGGATTTTAAATGATACACTGACTGTTAGGTTTCTGGTGTAGActtgtcagctttaatttgagggtattttcatccatatcgggtgaactgtttagaaattacaacactttttgcacatagtccccccattttaggggaccagtAAGTacagggacaaattcacttatgtgtattgaAGTAGCAAAAAGTCAAGTATTCGGTGCCATATTCATAGCaagcaatgactacatcaagcttgtgactctatacatttgttggatgcattttctcTTTGTTCAGGTTGTTTCAGATTATTGTGTGCccaatataaatgaatggtaaataatttgtgtcattttggagtcaatttttattgtaaaaaataatataatgTTTCTTAACACTTAAAGGTAACCTTGTAAAGGTAACCTTGTCCCCAGGATAATTGCTAGAGAGCCAGCTGTTGGAGGAGATTATGGTAAAGGAAACAGGATATCTTTGTCACATTTTGTCTCTTTAGTTAGAAAGTCTCTCTGATATTTTGCCTTCATACTGTGTTTTTGCTGTTTACACAGGAAACTGTATTCACACATGTGGAGGTCAAGGATCTAGCTACAGTAGCTGGTTATTGTTGCACAGTATGTGAGCTTTAGACTTGCATTGCAATCATTTAAAACAAACTATTTATCTAATCATTAAGTTTTCATACTAATACAGTGTTTTGAATCTATAATGTTTCAAAGACAACAATGGTCAGGTACAAGCCACTTTTCAGGTTCATAAAACAAGGTTGAATTATATGTACATTTTCTTAAATGTGTTTTTTCATGGTGTCAAAATGTGCCATCTCATCCCTCTGTTACGAAAACTGCTCAAGGGAACTATGTTAGTTTGAATATTATAGAAGAGTATTCGTGTGTGCCTTTTGGAGAAGAGAACTTTGATCAGTTACAACACTGAAATGTTCAGGCAAATGAATATTCAGGTGCATATTTATCCCAGTTCACTTTTACATAGGAATGAAGACTTGCGTCCAATCACACATCCCATctattgatgtaaaaaaaatatggtGTTTTCAAGCCAACATTTGAGTGTGTGTAATATGTACTCTATGTATGAAGTTATTCAGCGCTATTAATAGAAACTGTTTAACACAAGCCTCTGTCATTGTATTGTATAATACTGGATTAATCTTGCGCTTGAGAAGTGGTTTGCCTTGACTTTTCTACTGGTTCAGTTTTTCTGACCAAATTAGGACATACAGAGATCAACCATGATACATGTTAACAGAGACAATTATAATAATTGTatgataattatttattttttcaatcaTATGAATTATCACTGTGTTTGTTCTTTTGACATCCTGTACAGCACAATACAAAGTGTACAAGTCTTTTTCTATTGTTTAATTTCCACTGACCTACTAGTGTGGGTTGAAATAGGATTTTCCATAGCCGAACATTACTTTTTATCCAAGTCGCACCCAAAGACACTTAAATTTCAATTTTTCATCCTCTCCAACTTTAGAAATGTTCAATCTTATATTGCAACATTGTGTTGTTTTACTGAAACACGGACATAATGCACCTCGCTTCATCCCATTCTTTTATTTTCAATATCTATAATCATAAAATGGGACCAAATATTTAAAGGTACAGACACATGAGACAGGGTAGAAGTATTGCTTTTTGAAGCAAAAATCAGGTCATTGGTCTTTACTACTTTTGATTTGTTATCATTTTGTCAAAACATCACTCtgtgtaaaataatgaataataaaataataattttctGACTTGCAACATTATGTTCACTGTGTGAGTCAGATGGACATGACTTTAACACCTCAAACTTTAAGTTAAAGTAGTTCCAAGCAAATTCTAATTTGCCTAcacattacacatacagtacGCATTAAATAATATGCATCATAAGCCGCtatagctacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggccatagtggagtgtgactgtttgaggtt
>XM_036960344.1
aacaaatgacCATGTCATCGGATTTGGGTGAAAATAATACGAAATTCCATTGtgttgattactttttgcaaatccaatcagttttccacggtAATTCAACGTCATCACCTTGATTACCTGTACTGGCATCCACctgtatatatattgttttactgctgctctttaattacttgttacttttgaTCTCTTCTTCGTATTtttttgaactgcactgttggtgaggggctcATTCTCTGGGTGGCTCCTTCCCCACCACGTCTCACCGCTGCCACCATAAGCCCACCAAGAGATGTCTGCCTATCCAGCAGTGTGGAGGCAGCAGGTCCTCCTTTCCACTGCTCTTCCACCCTAGTGCCAAGGGCTCCCAGATCGTCATGGACATGGCCCAGAGGACCGTCAAGAGACAGGCCAGTTTCTGCAACGCCATCACCTTCAGCAACCGGCCCATTGCCCTGTTCGAGCAGGTCCGCCTCAAGATCACTAAGAAGCAGTGCTGCTGGAGCGGAGCCCTGCGTCTGGGCTTCACCTCCAAGGACCCATCCCGCATCAACCCAGACAACCTGCCTAAGTACGCCTGCCCAGACCTTGTCTCACAGAACGGATTCTGGGCCAAGGCCCTGCCCGAGGAGCTGTCCAATGAGGGCAACATCATCTCATTCTGGGTGGACAAGAAGGGCCGGGTCTTCTACCGTATCATTGACTCTATCCCCATACTGTTCTTCTGCGGGGTCCATGCCTCCGAGCCACTCTGGGCTCTCATAGACGTCTACGGCCTGACACGAGGGGTCCAGCTACTGGACAGTGAGATGGTGCCTCTCGACTGCCTGCATCCTCACTCCTTCACCGTGACCCACCAGGCGTCCTTATGGCGGGACCCAGACGACCCTCGCCTTTCTATCAGACTGTGTGACCTTCGCCACCAGcacaaggaggaagaggagcgCCTGCACCCCCTTAGTTCCACCTCCTGTTCCATCCCCCAGAACTCCCTCAACTCCCAGCAGTGCTCCCTGCTCCCCTCGCTCCTTGACAGCGATCTCCACTTCCACCCACTCCGAGGTGCCAACGTCAAAGCCCTCGATGAGAACACGGTGACCCGGGGCGTGGAGCACCGCAGCGGTGATGAGAGGACCTTGGTGTTCACCAGCCGGCCACTGTGTTgtggagagagtgtgtttgtAAAAGTGACCAAGGCGGGTGGCACTCGTCTCGGGTCACTCTCCTACGGCGTGACGTCGTGCGACCCGGCCGGGCTTCGGCCCAATGACCTGCCATACAGCCCGGAGTCTCTGGTCGACCGCAAGGAATTCTGGGCGGTGTGTCGGGTAGGGACGCCCCTGCATAACAGTGATATCCTGTGTTTCGTGGTGAACGTGGAGGGGGAGGTATTTCTGAGCCTCAATGGGATCAACGCGGGGATGCAGGTGTGTGTGGACAACTCCAGGCCTCTATGGATGTTCTTTGGTCTGCATGGAGACGTTACACAACTCAGGATCCTAGGCTCGTCTTTGAATGCAGACCCTCAGGTGCCATCAATTCCCAGCTCCCCCTCCTGCACCCCTAACACCCCAACACTGCGCTGCAGCGACAGCTCCGAGCCCAACCTCAACTCCAATCTGAACATCAACCTCAACACCATTCTCAATGCCAGCTTCCCACCAGCCTTCAGCAGCTCCACAGGTACAACTCGCAGCTCTCCATTCTCCAGCCACCCAAAATCCTCCACTTTCCAAGTGTGCTCGGGCTCTTGGAGTGACGAGTGCACCATCTGTTATGAGAACGTAGTGGACACGGTGCTGTACGCCTGTGGTCACATGTGTCTCTGCTACGCCTGTGGCCTCAAACTGAAGAAGATGGCCAACGCCTGCTGTCCGATCTGCAGGAGGACTATCAAAGACATTATAAAGACCTACCGGAGCACGTAGGATCGGCTGTGTAACACAGTGGCTTATTCACCGAGATCAAAGAAAACATTTAGGCCTATCAGTGCATGTAGGGCTGACCTGTCTGTGTCACCTATGGCTCAGCTACAGGAGGTTTTTCATCAAAGACCACCAGAGACATACTGTAATTCAGTCTTATTGGAGCATGTAGGTTTGGCCGGTCTCAGTATGGCTCAGCAACACTGAGATTCAGCATCATCCAGTTGGCCCGTCAAAGATATCAGAAAACCATGTTGGGGCATAAAGGGCTGGCATTTCACCATGACCTGTCTACtgtacagtggaggctgctgagaggcaGACTGCTTAtactaatggctggaatggagtaaatggaatgacaTCAATTGGGGAGCTTTGACTTGTGGTAATGTTATGGAAACCATTTgtatgatgtatttgataccactccacctattctgctccagccattaccaccatcctgtcctccccaattaagttaCCATCAACCTCCTGTTCTACTGTACCAGGTATGTGATAGACCATTAAAGATATTATAACGATACACAGGAAGAGGCCATGCTGGCTTCCACTGTGTCACTATATCCCAGATACTGGATTGGACTCCGCAACCATGGAAGTGGACTTAACCAGGAGGGATCTGGCTCACTCACTGCAAAACAATCATCTTCTACCCCACTGGTGGTGGACAGTGATGCATGTTTTGTTGTATAGGCTCTGTACTCCAGGATTTTAAATGATACACTGACTGTTAGGTTTCTGGTGTAGActtgtcagctttaatttgagggtattttcatccatatcgggtgaactgtttagaaattacaacactttttgcacatagtccccccattttaggggaccagtAAGTacagggacaaattcacttatgtgtattgaAGTAGCAAAAAGTCAAGTATTCGGTGCCATATTCATAGCaagcaatgactacatcaagcttgtgactctatacatttgttggatgcattttctcTTTGTTCAGGTTGTTTCAGATTATTGTGTGCccaatataaatgaatggtaaataatttgtgtcattttggagtcaatttttattgtaaaaaataatataatgTTTCTTAACACTTAAAGGTAACCTTGTAAAGGTAACCTTGTCCCCAGGATAATTGCTAGAGAGCCAGCTGTTGGAGGAGATTATGGTAAAGGAAACAGGATATCTTTGTCACATTTTGTCTCTTTAGTTAGAAAGTCTCTCTGATATTTTGCCTTCATACTGTGTTTTTGCTGTTTACACAGGAAACTGTATTCACACATGTGGAGGTCAAGGATCTAGCTACAGTAGCTGGTTATTGTTGCACAGTATGTGAGCTTTAGACTTGCATTGCAATCATTTAAAACAAACTATTTATCTAATCATTAAGTTTTCATACTAATACAGTGTTTTGAATCTATAATGTTTCAAAGACAACAATGGTCAGGTACAAGCCACTTTTCAGGTTCATAAAACAAGGTTGAATTATATGTACATTTTCTTAAATGTGTTTTTTCATGGTGTCAAAATGTGCCATCTCATCCCTCTGTTACGAAAACTGCTCAAGGGAACTATGTTAGTTTGAATATTATAGAAGAGTATTCGTGTGTGCCTTTTGGAGAAGAGAACTTTGATCAGTTACAACACTGAAATGTTCAGGCAAATGAATATTCAGGTGCATATTTATCCCAGTTCACTTTTACATAGGAATGAAGACTTGCGTCCAATCACACATCCCATctattgatgtaaaaaaaatatggtGTTTTCAAGCCAACATTTGAGTGTGTGTAATATGTACTCTATGTATGAAGTTATTCAGCGCTATTAATAGAAACTGTTTAACACAAGCCTCTGTCATTGTATTGTATAATACTGGATTAATCTTGCGCTTGAGAAGTGGTTTGCCTTGACTTTTCTACTGGTTCAGTTTTTCTGACCAAATTAGGACATACAGAGATCAACCATGATACATGTTAACAGAGACAATTATAATAATTGTatgataattatttattttttcaatcaTATGAATTATCACTGTGTTTGTTCTTTTGACATCCTGTACAGCACAATACAAAGTGTACAAGTCTTTTTCTATTGTTTAATTTCCACTGACCTACTAGTGTGGGTTGAAATAGGATTTTCCATAGCCGAACATTACTTTTTATCCAAGTCGCACCCAAAGACACTTAAATTTCAATTTTTCATCCTCTCCAACTTTAGAAATGTTCAATCTTATATTGCAACATTGTGTTGTTTTACTGAAACACGGACATAATGCACCTCGCTTCATCCCATTCTTTTATTTTCAATATCTATAATCATAAAATGGGACCAAATATTTAAAGGTACAGACACATGAGACAGGGTAGAAGTATTGCTTTTTGAAGCAAAAATCAGGTCATTGGTCTTTACTACTTTTGATTTGTTATCATTTTGTCAAAACATCACTCtgtgtaaaataatgaataataaaataataattttctGACTTGCAACATTATGTTCACTGTGTGAGTCAGATGGACATGACTTTAACACCTCAAACTTTAAGTTAAAGTAGTTCCAAGCAAATTCTAATTTGCCTAcacattacacatacagtacGCATTAAATAATATGCATCATAAGCCGCtatagctacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagagaggccatagtggagtgtgactgtttgaggtt

Function

NR:

description
E3 ubiquitin-protein ligase NEURL1-like

GO: NA

KEGG:

id description
K01931 NEUR; protein neuralized

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580511.2 False 5034 mRNA 0.45 6 24292899 24360854
XM_036960344.1 True 4685 mRNA 0.45 6 24292899 24361215

Neighbor

gene id symbol gene type direction distance location
gsto1 gsto1 coding downstream 108958 24174161 ~ 24183941 (-)
LOC118943923 NA coding downstream 175219 24075852 ~ 24117680 (-)
LOC110503092 NA coding downstream 220410 24058972 ~ 24072489 (-)
LOC110502467 LOC106607187 coding downstream 255907 23867639 ~ 24036992 (-)
LOC110502466 LOC106608700 coding downstream 443756 23847056 ~ 23849143 (-)
LOC110502477 LOC106608714 coding upstream 159331 24520546 ~ 24630581 (-)
LOC110502481 smndc1 coding upstream 393350 24754565 ~ 24766770 (-)
LOC110502483 LOC106607298 coding upstream 445758 24806973 ~ 24813358 (-)
LOC118943844 NA coding upstream 478694 24839909 ~ 24846204 (-)
gnrh1 gnrh1 coding upstream 766396 25127611 ~ 25128951 (-)
G1845501 NA non-coding downstream 97647 24194755 ~ 24195252 (-)
G1845481 NA non-coding downstream 114732 24151269 ~ 24178167 (-)
G1845471 NA non-coding downstream 145968 24143453 ~ 24146931 (-)
G1845469 NA non-coding downstream 151873 24140800 ~ 24141026 (-)
G1845461 NA non-coding downstream 160301 24126944 ~ 24132598 (-)
G1845627 NA non-coding upstream 32851 24394066 ~ 24403892 (-)
G1845784 NA non-coding upstream 253324 24614539 ~ 24622693 (-)
G1845988 NA non-coding upstream 389817 24751032 ~ 24752844 (-)
G1846027 NA non-coding upstream 458087 24819302 ~ 24820076 (-)
LOC110502462 LOC106607169 other downstream 947128 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1059476 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1074629 23213905 ~ 23218749 (-)
G1841959 NA other downstream 2921100 21345514 ~ 21371799 (-)
G1841694 NA other downstream 3349284 20943307 ~ 20943615 (-)
G1846858 NA other upstream 1078592 25439807 ~ 25440387 (-)
G1850441 NA other upstream 3713710 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 4563524 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 6790394 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6856382 31217597 ~ 31218171 (-)

Expression


Co-expression Network