LOC110502477 (LOC106608714)


Basic Information

Item Value
gene id LOC110502477
gene name LOC106608714
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24520546 ~ 24630581 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580517.2
ACGATTCAACAGATAATAATCAAACCCTAAAAACTATTCTATTATCTACAAGACACAATTCAAAGCGGACTAACTTTAACCAAGGATGGAGGCAACCGTACCCGGCTGCTGCTCTTATTGTTACATTGCTATGTGGATGTGGCTCTTTACCCTAACTTCCACCCTGGACTTGATCAAAACGGAGATAAGGTGCATTCCATCATGCCAACTCCCCGTTATCAAGCCGGCTCCCCGTGAACTCTCTGAAGTGGTATTTGACCCGTTTGGAAAAGTACCAGAGGGTGAAATTGTGGGGTTAGCAGAGAAGTCACCACGTTGTCACCCCTTTAATGGCAGATGTAAAGAAGTCAAAGTTGCGGAATATTTAGCGCGCGTCTCCGGTGATGGGGAGGTCATTTCAGTGCGTAAATCCGAGCAGCACTTTGCAAATAAATCAGACAGCCGTGGATTTGAAAAACGTCAGAGCAGGGAGAAACTTTCCAGTTCTGAGGAGCTTTATCAGCATCAAAGTGGCTCGGGCATATATATTCCATCTGCCACCCTCAATAAAGTATCCGTCAATAACACTAGACATAATAAGATTAATTGTTTTGGAagagaaaatagacttaaacgaCGTGAATTGTCAAAAAACAAGGTTGGAGCAAGTTTTAGGAGCCGTGGAAGGAGACGAAAGCGTAGCTTCCAGACGGCGGAGAGCAGAGCAACTTGGTCCGGATTCCGATGGAACAGTGAAGATGCCTCAACCCCGGGGCAACATGATGAGTTGAAACTCATTAGTTCTACGTTCGCACTCACCGGGGATTCAGCTCATAACCAAGCCATGGTGCATTCCTCCGGACAAAATAGCAGTGTGATTCTAATGCTGACTAAGTACTTTGACTTCAGCCTTGGCAGTGTCACAGAGAGCTCTCTATGGAGGTCAATAGACTATGGAACCACATATGAGAAACTTAATGAAAAGGTGGGACCAAAAACATTACTAAGCTACTTGTACGTGAGTCCGAATAACAAACGAAAGATCATGTTACTGACCGACCCAGAGGTGGAGAGCAGCCTGCTCATTAGTCTTGATGAGGGCGCATCCTATCAGAGGTACCACTTAGCCTTCGACATCCTCAGCCTCCTCTTCCACCCCGAGCAGGAGGACTGGATCCTGGCTTACGGCCATGACCAGAAGCTGTACGTCTCTGTTGAATTTGGAAGAAGATGGCAGCTCGTGCATGAGAGTGTAGTCCCCAACAGATTTTACTGGTCAAAACTGGGTTTGGACCAAGAGCCAGGAATGATTCACTTGGAGACCAGTGTTTCTGATAGACGGTCCCAGTATATAACGTGTAAGCTGCAGAACTGCTCAGAGGCCAACAAAGGCAGGCCTTTCCCTGGATTTATCAGCCCTGATTCCCTGGTCGTTCAGGACCAGTATGTTTTCATTCAGGTACCAATGGGTGGCCGGCCTGTCCATTATGTGTCTTACAGAAGAAATGCTTTCTTCCCAATGAAGCTACCTAAGTACATATTACCAAAGGACTTGCAGATAATCAGCACAGATGATAACCAGGTGGTTGCAGCAGTGCAGGACTGGCACCAGAATGACTCATACAACCTGTACATGTCAGAGGCCCGAGGACTCTTCTTCACTCTGGCCCTGGAGAACATAGTGAGCAGTGGGGGACCAGAGGGCAACATCATGATAGACCTCTATGAGGTAGCAGGAATAAAAGGGGTGTTCTTGTCAAATAAAGTTGTCGAGGGCCAAGTGAAAACGTTTATCACTTACAATAAGGGGCGAGACTGGCATCTTCTACAGGCTCCAACCACTGATCTGAAGGGAACCAGAATCTACTGTGTACAGCCCTACTGTTCATTACACCTGCATCTCCATGTGTCTGACAACCCGTACACGTCTGGAAACATAGTCAGTAAGGAATCAGCTCCAGGAATTATAGTAGCTTCAGGTACCATTGGGCCCGAGCTTACCGCCTATAATGTCAGCATTTTCATCACCTCAGATGCTGGCAACACTTGGAGAGAGGTATTTGAGGAGGAGTATAGTGTCCTCTTTCTTAACCAGGGTGGTGCCCTAGTGGCCATTCgacacacacctctccccatCAGACATATCTGGCTGAGTTTTGATGAGGGAAAACGCTGGAACAAATACAgcttcaccccctctcctctctatgtaGACGGGGTCTTAGGAGAGCCAGGGGAAGACACCCTCATCATGACAATATTTGGCCATTTCAGCCATCGTTCTGAGTGGCAGCTTGTCAAAATAGACTTCAAGGCCATCTTTAACAGAAGGTGTAACACAGACGACTATCAGACCTGGCAGTTACACAATGATGGTAAAGTCTGCATTATGGGAGTGAAGAGAATCTTTCATAATCTGAAGCCCGACACCAGATGTGTCAAAACCAGAGATCAGTACATCTCCCAGATGTCAGACTCCTGTCCATGCACCGAGGCTGACTTTGAGTGTGATTATGGCTTTGAGAGGCAGAGTGATGGAGGATGCACCCCTGTCTTTTGGTTTGTTCCATCCTCCGTGTCCACAGACTGCACCACTGGGGACAGCTTCCTCAACACTACTGGATACCGTAAGGCTCTATCCAATAACTGCACTGCGGAAACCCTGGGGAAGTATAGCCCTAGGAGCCAGAGGTGTCCCCGCCAGGCCCCGAGAGGTCTGCAGCTGGTCACCAGTGAGGGGACACTTACGGCCACCATGGGGGACAACGTCACCTTCCTGGTGTTTCTGGAAGAGAGTGATGGCTCCACAACAAGTATAACATTGGACTTTGGAGACGGGACGGCCATATCCTACGCTAACATCAGCTCCATAGAGGATGGAATCAAACATATATACAGTAAAGTGGGCATTTACCGAGTGGCTGCCACGGCACTCAACAGCCTTGGCTCTGAGAGAGTCTTACTATATCTACATGTTACCTGTCTCCTTGAGCAAGTGCAGCTTTCAGCTCCCTCGGTGGTTGTTAGGAATGAAGCAGTGAATCTATCAACAGTCCTGAAGCCACGTTACGTTGGATCAGTCACCTACTACTGGTGGTTCAACAACCACACTGAGCCTGTTATGACTTTAGTGGGAGGAATGTCCTTCACCTTCTCAAAGGAGGGAACCCATACTGTCACCGTGCAAGTGTCAGTTGGTAACACCGTCCTTCAAGACAAAATAACTGTTGCTGTCTATGAACATTTCAAGTCGCACGTTTTAGCCTTCTCCTCTAATCTGGAGGCCTTCAATCCTGGTGTGCCTGAATGGAGGCAGGACATCAGTAGAGTGGTCAAGGACTCCATGGTCCAAGTCACAGGGATCAGTGGAGAGCAGCTTCTAGTGTCAGTGCTCCCAGGGTTGCCAACGGCAGCAGAGTTTTGCATCGTCCCTGAAAAAAGGTCAACCGAGGGGAGAATGGATGGAAAAGTGACACATTTAGAGCAGCTCTCTCTAGTCCTGCTAAGTGCCCTGAATCAAGACCTCATCCAGTTTACTCTGCAGCCTGGGGTTCAGATTAACGTCTATGCCACACAACTGTCTCCAGCTCCTATCATGGACACCAGTGAGAGTGGTCACAATGGTGCTACAGTCATTATGCTAGTGTCAGTCGTATTTGTGGGTTTGGCAGTTTTCGTTATCTACAAGTTCAAAAGGAAGATCCCTGGCATCAACATCCACACAAATGAGCGAGAGAAACAACAGGAAGTGATCCCTTCGGTGGTGTCTATAGCTGTCCCAAACCCTGAGGGGGACATGGTGAGCACTTTGGAGCACTTGGACATAGGGCCAGATGCACGTGGCATAGGATACCTACCATCTCACACAGATGTCAAACTCTCAGATGAAACTCCCCATATGTTTTAATGCTGAGTCTACAGCCAACTTGTAAGCAATACATCTTTTTGGCAGTTGCTTCCAGCATTCTCTGAAACCACAGAACAAATGGAAGGTCTCCAGTGTTTTCTACCCATGCATGGACAGACCATCTTACACTGTGCTGCCTGGACTATAGGAGGAGACTACAGATTTTACTGGCGTCTTGAAAAGGGTCATTTTTAATCGAAATACTTGTATTTTTGCAAGAACATTGCACGTTTGTGAAAATAGGGTAATTACAGAACTGCTGAACTAAAGATAATTTGACTCAGCTGGTTACAGTCGTGTGTATGACTTCAAGACAAGCAACAGTAAAGcaacagtaatgtacagtaatcTATTTCTCTTGAGTGTTCCATTCCTAGTACGTCTCTGGTGGTAGGTGTGTGGAGGATGTGTAAGTTAAGTGTACTTAGGTCCCGATTCCGACCCGAGTTAAGCACCTGTAAATGGAACGTTattccctttttatgcacttttctctctttctctctattatgACCTTGAACATAACcattgtgtagtcttaacattctgtatactccccttttCACTAAACCCCAAAAATGAAGCAGCttaattttaaaccccaaatctattttgcatgaagaaacaatcagtcattcatcacaaactttgtgaatatctgggttttccctcttcacaatgcagaaagactgcatttaatcagtggacactaCTCATTTTTATAATACAACACACCTGTtgtaattgttttctttactaaagtagaggtttattattattattagtattattgctaaaggtactgcataggtgtaaatatttttttttaaatatcaagagatagcacttgtgtagcctaagaaagtagcagaaatgtgcagaaagtagttttgaatgaATTTTATTGAAAGGAAACTAACTTTTGGCAACGTGGTGATGTAttattatatactgtacaatgaggatttcaactacaaaatacaagtcttctcccattttttaaccattgcccccacccacaaagtgtataaacaacaa
>TU2113095
CCCCGAGCAGGAGGACTGGATCCTGGCTTACGGCCATGACCAGAAGCTGTACGTCTCTGTTGAATTTGGAAGAAGATGGCAGCTCGTGCATGAGAGTGTAGTCCCCAACAGATTTTACTGGTCAAAACTGGGTTTGGACCAAGAGCCAGGAATGATTCACTTGGAGACCAGTGTTTCTGATAGACGTGAGTCATCACCACATCTATGACATCTTATTTGAGGACTTTATTATAGGGATTCTTGGGCTTATTTTCACACACAAGTGACATTTTCTATCTGCTAAACAGCCTttacagcagggttccccaac

Function

NR:

description
VPS10 domain-containing receptor SorCS1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580517.2 False 4924 mRNA 0.45 27 24520546 24630581
TU2113095 True 310 lncRNA 0.46 3 24574323 24587734

Neighbor

gene id symbol gene type direction distance location
LOC110502475 LOC106607228 coding downstream 159331 24292899 ~ 24361215 (-)
gsto1 gsto1 coding downstream 336605 24174161 ~ 24183941 (-)
LOC118943923 NA coding downstream 402866 24075852 ~ 24117680 (-)
LOC110503092 NA coding downstream 448057 24058972 ~ 24072489 (-)
LOC110502467 LOC106607187 coding downstream 483554 23867639 ~ 24036992 (-)
LOC110502481 smndc1 coding upstream 123984 24754565 ~ 24766770 (-)
LOC110502483 LOC106607298 coding upstream 176392 24806973 ~ 24813358 (-)
LOC118943844 NA coding upstream 209328 24839909 ~ 24846204 (-)
gnrh1 gnrh1 coding upstream 497030 25127611 ~ 25128951 (-)
LOC110502487 LOC106607391 coding upstream 500675 25131256 ~ 25192325 (-)
G1845627 NA non-coding downstream 116654 24394066 ~ 24403892 (-)
G1845501 NA non-coding downstream 325294 24194755 ~ 24195252 (-)
G1845481 NA non-coding downstream 342379 24151269 ~ 24178167 (-)
G1845471 NA non-coding downstream 373615 24143453 ~ 24146931 (-)
G1845469 NA non-coding downstream 379520 24140800 ~ 24141026 (-)
G1845988 NA non-coding upstream 120451 24751032 ~ 24752844 (-)
G1846027 NA non-coding upstream 188721 24819302 ~ 24820076 (-)
G1846045 NA non-coding upstream 206017 24836598 ~ 24837797 (-)
G1846126 LOC106577027 non-coding upstream 255149 24885730 ~ 24889515 (-)
G1846180 NA non-coding upstream 317999 24948580 ~ 24948779 (-)
LOC110502462 LOC106607169 other downstream 1174775 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1287123 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1302276 23213905 ~ 23218749 (-)
G1841959 NA other downstream 3148747 21345514 ~ 21371799 (-)
G1841694 NA other downstream 3576931 20943307 ~ 20943615 (-)
G1846858 NA other upstream 809226 25439807 ~ 25440387 (-)
G1850441 NA other upstream 3444344 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 4294158 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 6521028 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6587016 31217597 ~ 31218171 (-)
G1845784 NA non-coding upstream 26805 24614539 ~ 24622693 (-)

Expression


Co-expression Network