LOC110502483 (LOC106607298)


Basic Information

Item Value
gene id LOC110502483
gene name LOC106607298
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048587.1
NCBI id CM023241.2
chromosome length 62880378
location 24806973 ~ 24813358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021580531.2
GATAGATACCTGAAAGATGCTTGGAGGCATGTCGAAATAACGTCATTGTGTCACGCAATGTGCGCCATTTtggatggggggaaaaaaatcacaGACGATTTCCGTGATCTGATCCCGACTCTTCACCTTGCCTGTGGATGTTGACTATTTTTACCCCATGCAAGTTACATTGGTTGAATAAGCAGTGTTCAGTAATAGCCAACTCTGCTAAATGAAACAATGGCAGGAGTTGCCGGTGGAAATGACTTTCAGTGGTGTTTCTCACAAGTGAAGGGGGCAATAGATGAAGATGTTGCGGAAGCGGATATCATCTCAACGGTTGAATTCAACCATTCTGGAGAGTTTCTAGCAACTGGAGACAAGGGAGGCAGAGTTGTCATATTTCAACATGAACAGGAGTGTAAAAATAGACCACACCTGCGCGGGGAATACAACGTCTATAGCACATTTCAGAGTCACGAACCTGAATTTGACTACTTGAAAAGTTTAGAAATTGAGGAAAAAATTAACAAAATAAGATGGTTACCCCAACAAAACTCTGCTCACTTTCTGCTCTCAACAAATGATAAAACTATCAAATTGTGGAAGATCAGTGAACGAGACAAGCGGGCTGAGGGTTACAACTTGAAAGACGAAGATGGACGTCTCAGGGATCCCTTTAGAATTACCTCCCTGCGGGTACCAGTGCTGATGCCCATGGATCTCATGGTAGAAGCAAGTCCTCGGAGGGTGTTTGCCAACGCTCATACATATCATATTAATTCCATTTCTGTAAATAGCGATCATCAAACGTACCTCTCCGCTGATGACCTAAGAATTAACCTATGGCACTTGGAAATCACTGACAGAAGCTTTAACATTGTAGACATCAAGCCTGCCAACATGGAGGAACTGACAGAGGTGATCACAGCTGCTGAGTGCCAACCAAACCAATGCAATGTATTTGTGTACAGCAGTAGCAAAGGCACCATACGCCTCTGTGACATGCGAGCAGCAGCACTCTGCGATAGGCACACTAAGTTCTTTGAGGAGCCTGAGGATCCAAGCAGCAGGTCGTTCTTCTCTGAGATCATCTCGTCCATTTCTGACGTGAAGTTCAGTCACAGCGGGCGCTACATGATGACACGGGACTACCTCTCCGTCAAGGTGTGGGACCTCAACATGGAGAACAGGCCAGTCGAGACATATCAGGTTCACGAATACCTTCGCAGCAAGCTCTGTTCATTGTATGAAAATGACTGCATCTTTGACAAGTTTGAGTGCTGCTGGAACGGTAGCGACAGTGCAATCATGACTGGCTCCTACAACAACTTCTTCCGGATGTTTGACCGCAACACCAGGAAGGACATTACACTGGAGGCCTCCAGGGAGAGCAGCAAACCGCGTGGCACACTCAAACCCCGCAAAGTCTCCACTGGAGGCAAGAGGAAGAAAGACGAAATTAGCGTGGACAGCCTGGATTTCAACAAGAAGATCCTGCACACCGCCTGGCACCCCAAAGAAAATGTAATCGCTGTGGCAGCCACCAACAACCTGTACATTTTCCAGGATAAGATCAACTAAAAAAATAATTGGGCTCCATCCTGAGGACAAGGCTTTACTGTTCCTGCGTAGTTAAGCCTAGTGGTTTATCCGTATCAGAAACTAACAGCCCTGTCGTCCTCCTGGTGGCACTTTTCTCCTTTTGTTGCTGCAGGAGGTTGATTGGTCtgcctgttttttattttgagtcAGAGGTTGATTTTGCCTTGGGTGAATCGGTGCCAGGGCAGAGATCGGACCCGGAGAGCCCACCTTACTTTGAATCAATGGAACGGCACTCCCAAGAGGTCAAACTCTTGAACATTGGTGTTTGTGTTGACATTTTCAGCCTTTATTTCATAATCTAACAACCAAACTATGGAAAGCCCTGAAAATGACCTCTTGTTATTGTTATAACACCCTCTTTTGGGCCTTTCTAAAACATGATATTTCCTGGGTTTTAGGCCTACCTGTTAACATTCCCCCATTGACcatgcattcaggccaaagcacTTGCTACAGGTCATGAATTTGGAAAGTGGACCTTTTTTCTTTTCTCTACCCACTCCCTCTATCCCCAATTTATCCCCCAGACATGGTAATCTCAATGACTGTATCTATTCAAGTACACCTTTATGGTGTCATCCACTTAATAAAAGTAACTAAAACTACAGCTATGTGTTTTAATATTTAGAACTGTATTAAATCATGTTCTTAACTGCTTTGCATGTTTTTATGTTGTGGAGGTGGAAAAACATTCTGTCACACTGCGGTCTTTTGAGTAGTTGTCTCCAGCCATCTTCAAAGGAACTACTCCGACGTTTCAGAACCACTGTTTGAGACCGATCATGTGCAAGTGTCGAGATATTTATTTGTGTTCCTCTCATTTAAGATCCAGGCTGGAAACTTCATGGGAGGAGAtgcaagacaaagggaatctgcAGCCTTAATACCTACGTCTATCAATGACAGCTACTGGTTATGTCCCCAAATGTTTTACGAACCTTATGTGCATTATTTTTCAATTCTATTTTATAGATTTCTCATTGCTGCTGCTATTTTGTGGCTGTCTGTGAAAACACTAGGTATATAATTAGTCAGAGAAAGAGTACTGCACACCATACAGCTCTATTGATATACAGATTACCTCCAAAATAAGGAAAGTTGATGGTTCTTCGTGTCGTAAGTGGACATTCCGACAAGCCTCTTACATGTGCCCTTAAATCATTTATTGGGATCAAAAGTGCATACTTTGTTTTCCAAGTTACCAATGCAAAAATGAAGGTTGAATTGACATATGTACTGATTATAACATTAAAAACAGGAACACTGGTAAAGCATTTCTCTGTTTAATAATTAACATGGTGGCAATGTATTCATATGTTTATGTTGACCAAagttaaataaaatcaaataatgTT

Function

NR:

description
serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform-like isoform X2

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG:

id description
K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021580531.2 True 2942 mRNA 0.43 10 24806973 24813358

Neighbor

gene id symbol gene type direction distance location
LOC110502481 smndc1 coding downstream 40203 24754565 ~ 24766770 (-)
LOC110502477 LOC106608714 coding downstream 176392 24520546 ~ 24630581 (-)
LOC110502475 LOC106607228 coding downstream 445758 24292899 ~ 24361215 (-)
gsto1 gsto1 coding downstream 623032 24174161 ~ 24183941 (-)
LOC118943923 NA coding downstream 689293 24075852 ~ 24117680 (-)
LOC118943844 NA coding upstream 26551 24839909 ~ 24846204 (-)
gnrh1 gnrh1 coding upstream 314253 25127611 ~ 25128951 (-)
LOC110502487 LOC106607391 coding upstream 317898 25131256 ~ 25192325 (-)
LOC110503059 NA coding upstream 604006 25417364 ~ 25418599 (-)
LOC110503093 NA coding upstream 889898 25703256 ~ 25704420 (-)
G1845988 NA non-coding downstream 54129 24751032 ~ 24752844 (-)
G1845784 NA non-coding downstream 184280 24614539 ~ 24622693 (-)
G1845627 NA non-coding downstream 403081 24394066 ~ 24403892 (-)
G1845501 NA non-coding downstream 611721 24194755 ~ 24195252 (-)
G1846027 NA non-coding upstream 5944 24819302 ~ 24820076 (-)
G1846045 NA non-coding upstream 23240 24836598 ~ 24837797 (-)
G1846126 LOC106577027 non-coding upstream 72372 24885730 ~ 24889515 (-)
G1846180 NA non-coding upstream 135222 24948580 ~ 24948779 (-)
G1846283 NA non-coding upstream 209941 25023299 ~ 25023511 (-)
LOC110502462 LOC106607169 other downstream 1461202 23344353 ~ 23358461 (-)
G1843946 NA other downstream 1573550 23182987 ~ 23233423 (-)
LOC110502461 LOC106607165 other downstream 1588703 23213905 ~ 23218749 (-)
G1841959 NA other downstream 3435174 21345514 ~ 21371799 (-)
G1841694 NA other downstream 3863358 20943307 ~ 20943615 (-)
G1846858 NA other upstream 626449 25439807 ~ 25440387 (-)
G1850441 NA other upstream 3261567 28074925 ~ 28078251 (-)
LOC110502553 NA other upstream 4111381 28919846 ~ 28932600 (-)
LOC110502574 LOC106608078 other upstream 6338251 31151609 ~ 31239202 (-)
G1854905 NA other upstream 6404239 31217597 ~ 31218171 (-)

Expression


Co-expression Network